RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 PNKDQ8N490 385 aa12.75□□□□□ -0.37
NUP88-207ENST00000573584 OR10W1Q8NGF6 305 aa12.75□□□□□ -0.37
NUP88-207ENST00000573584 NRN1Q9NPD7 142 aa12.75□□□□□ -0.37
NUP88-207ENST00000573584 SVILO95425 2214 aa12.74□□□□□ -0.37
NUP88-207ENST00000573584 DIRC3C9JPN6 131 aa12.74□□□□□ -0.37
NUP88-207ENST00000573584 FAM216BQ8N7L0 139 aa12.74□□□□□ -0.37
NUP88-207ENST00000573584 RND1Q92730 232 aa12.74□□□□□ -0.37
NUP88-207ENST00000573584 RCHY1Q96PM5 261 aa12.74□□□□□ -0.37
NUP88-207ENST00000573584 GAFA1Q96PS6 74 aa12.74□□□□□ -0.37
NUP88-207ENST00000573584 A0A1W2PS18 150 aa12.74□□□□□ -0.37
NUP88-207ENST00000573584 AMY1AP04745 511 aa12.74□□□□□ -0.37
NUP88-207ENST00000573584 RNASE2P10153 161 aaKnown RBP12.74□□□□□ -0.37
NUP88-207ENST00000573584 PMCHP20382 165 aa12.74□□□□□ -0.37
NUP88-207ENST00000573584 SRIP30626 198 aa12.74□□□□□ -0.37
NUP88-207ENST00000573584 GATA4P43694 442 aa12.74□□□□□ -0.37
NUP88-207ENST00000573584 TIMM23BQ5SRD1 257 aa12.74□□□□□ -0.37
NUP88-207ENST00000573584 SLC25A48Q6ZT89 311 aaKnown RBP12.74□□□□□ -0.37
NUP88-207ENST00000573584 OR5B3Q8NH48 314 aa12.74□□□□□ -0.37
NUP88-207ENST00000573584 KCNS1Q96KK3 526 aa12.74□□□□□ -0.37
NUP88-207ENST00000573584 SMIM27A0A1W2PRY6 76 aa12.73□□□□□ -0.37
NUP88-207ENST00000573584 A6NNC1 897 aa12.73□□□□□ -0.37
NUP88-207ENST00000573584 SAA1P0DJI8 122 aaPredicted RBP12.73□□□□□ -0.37
NUP88-207ENST00000573584 CD69Q07108 199 aa12.73□□□□□ -0.37
NUP88-207ENST00000573584 NHLRC2Q8NBF2 726 aa12.73□□□□□ -0.37
NUP88-207ENST00000573584 OR1L8Q8NGR8 309 aa12.73□□□□□ -0.37
NUP88-207ENST00000573584 IGF2BP2-AS1Q96M15 143 aa12.73□□□□□ -0.37
NUP88-207ENST00000573584 RNF2Q99496 336 aa12.73□□□□□ -0.37
NUP88-207ENST00000573584 RPUSD1Q9UJJ7 312 aaKnown RBP12.73□□□□□ -0.37
NUP88-207ENST00000573584 ICE1Q9Y2F5 2266 aa12.73□□□□□ -0.37
NUP88-207ENST00000573584 IGLV3-9A0A075B6K5 115 aa12.73□□□□□ -0.37
NUP88-207ENST00000573584 TRAV5A0A0B4J249 113 aa12.73□□□□□ -0.37
NUP88-207ENST00000573584 BMPR1BO00238 502 aa12.73□□□□□ -0.37
NUP88-207ENST00000573584 CA1P00915 261 aaPredicted RBP12.73□□□□□ -0.37
NUP88-207ENST00000573584 HLA-DQA1P01909 254 aa12.73□□□□□ -0.37
NUP88-207ENST00000573584 TNFAIP6P98066 277 aaPredicted RBP12.73□□□□□ -0.37
NUP88-207ENST00000573584 BATFQ16520 125 aa12.73□□□□□ -0.37
NUP88-207ENST00000573584 ZNF474Q6S9Z5 364 aaPredicted RBP12.73□□□□□ -0.37
NUP88-207ENST00000573584 DEFB123Q8N688 67 aa12.73□□□□□ -0.37
NUP88-207ENST00000573584 SNRNP40Q96DI7 357 aaKnown RBP12.73□□□□□ -0.37
NUP88-207ENST00000573584 TMEM208Q9BTX3 173 aa12.73□□□□□ -0.37
NUP88-207ENST00000573584 BET1LQ9NYM9 111 aa12.73□□□□□ -0.37
NUP88-207ENST00000573584 BOD1L1Q8NFC6 3051 aa12.72□□□□□ -0.37
NUP88-207ENST00000573584 MORN5Q5VZ52 161 aa12.72□□□□□ -0.37
NUP88-207ENST00000573584 Q8N976 141 aa12.72□□□□□ -0.37
NUP88-207ENST00000573584 OR4B1Q8NGF8 309 aa12.72□□□□□ -0.37
NUP88-207ENST00000573584 OR2T6Q8NHC8 308 aa12.72□□□□□ -0.37
NUP88-207ENST00000573584 LINC00479Q96M42 142 aa12.72□□□□□ -0.37
NUP88-207ENST00000573584 LINC00574Q9H8X3 128 aa12.72□□□□□ -0.37
NUP88-207ENST00000573584 CDC42EP3Q9UKI2 254 aa12.72□□□□□ -0.37
NUP88-207ENST00000573584 MBD3L4A6NDZ8 208 aaPredicted RBP12.72□□□□□ -0.37
NUP88-207ENST00000573584 MBD3L3A6NE82 208 aaPredicted RBP12.72□□□□□ -0.37
NUP88-207ENST00000573584 MBD3L5A6NJ08 208 aaPredicted RBP12.72□□□□□ -0.37
NUP88-207ENST00000573584 WT1P19544 449 aaPredicted RBP12.72□□□□□ -0.37
NUP88-207ENST00000573584 UBE2L3P68036 154 aaKnown RBP12.72□□□□□ -0.37
NUP88-207ENST00000573584 MBD3L2Q8NHZ7 208 aaPredicted RBP12.72□□□□□ -0.37
NUP88-207ENST00000573584 SELENOVP59797 346 aa12.72□□□□□ -0.37
NUP88-207ENST00000573584 TMEM68Q96MH6 324 aa12.72□□□□□ -0.37
NUP88-207ENST00000573584 COMMD5Q9GZQ3 224 aa12.72□□□□□ -0.37
NUP88-207ENST00000573584 DNAJC4Q9NNZ3 241 aa12.72□□□□□ -0.37
NUP88-207ENST00000573584 M0R296 226 aa12.71□□□□□ -0.37
NUP88-207ENST00000573584 TM4SF5O14894 197 aa12.71□□□□□ -0.37
NUP88-207ENST00000573584 IGHV1-46P01743 117 aa12.71□□□□□ -0.37
NUP88-207ENST00000573584 APCSP02743 223 aa12.71□□□□□ -0.37
NUP88-207ENST00000573584 ZNF788Q6ZQV5 615 aa12.71□□□□□ -0.37
NUP88-207ENST00000573584 FAM168AQ92567 244 aa12.71□□□□□ -0.37
NUP88-207ENST00000573584 FAM167A-AS1Q96KT0 104 aa12.71□□□□□ -0.37
NUP88-207ENST00000573584 SLC25A2Q9BXI2 301 aa12.71□□□□□ -0.37
NUP88-207ENST00000573584 MRPL32Q9BYC8 188 aaKnown RBP12.71□□□□□ -0.37
NUP88-207ENST00000573584 IZUMO1RA6ND01 250 aa12.71□□□□□ -0.38
NUP88-207ENST00000573584 ZNF324O75467 553 aaPredicted RBP12.71□□□□□ -0.38
NUP88-207ENST00000573584 ASPHD1Q5U4P2 390 aa12.71□□□□□ -0.38
NUP88-207ENST00000573584 CACNG8Q8WXS5 425 aa12.71□□□□□ -0.38
NUP88-207ENST00000573584 SSBP3Q9BWW4 388 aaPredicted RBP12.71□□□□□ -0.38
NUP88-207ENST00000573584 ZNF331Q9NQX6 463 aaPredicted RBP12.71□□□□□ -0.38
NUP88-207ENST00000573584 DSCAML1Q8TD84 2053 aa12.71□□□□□ -0.38
NUP88-207ENST00000573584 DLEU1O43261 78 aa12.7□□□□□ -0.38
NUP88-207ENST00000573584 ERHP84090 104 aaKnown RBP12.7□□□□□ -0.38
NUP88-207ENST00000573584 CYB5R2Q6BCY4 276 aa12.7□□□□□ -0.38
NUP88-207ENST00000573584 HARBI1Q96MB7 349 aa12.7□□□□□ -0.38
NUP88-207ENST00000573584 DLL1O00548 723 aa12.7□□□□□ -0.38
NUP88-207ENST00000573584 USF1P22415 310 aaPredicted RBP12.7□□□□□ -0.38
NUP88-207ENST00000573584 NDUFA4L2Q9NRX3 87 aa12.7□□□□□ -0.38
NUP88-207ENST00000573584 AMMECR1Q9Y4X0 333 aaPredicted RBP12.7□□□□□ -0.38
NUP88-207ENST00000573584 YLPM1P49750 1951 aaKnown RBP12.69□□□□□ -0.38
NUP88-207ENST00000573584 hADV38S2A0JD32 116 aa12.69□□□□□ -0.38
NUP88-207ENST00000573584 PSMB11A5LHX3 300 aa12.69□□□□□ -0.38
NUP88-207ENST00000573584 CHRNB4P30926 498 aa12.69□□□□□ -0.38
NUP88-207ENST00000573584 SPATA45Q537H7 98 aa12.69□□□□□ -0.38
NUP88-207ENST00000573584 FAM19A2Q8N3H0 131 aa12.69□□□□□ -0.38
NUP88-207ENST00000573584 OSR1Q8TAX0 266 aaPredicted RBP12.69□□□□□ -0.38
NUP88-207ENST00000573584 MRPL20Q9BYC9 149 aaKnown RBP12.69□□□□□ -0.38
NUP88-207ENST00000573584 LPAR2Q9HBW0 351 aa12.69□□□□□ -0.38
NUP88-207ENST00000573584 DCAF16Q9NXF7 216 aa12.69□□□□□ -0.38
NUP88-207ENST00000573584 PYYP10082 97 aa12.69□□□□□ -0.38
NUP88-207ENST00000573584 RPL8P62917 257 aaKnown RBP12.69□□□□□ -0.38
NUP88-207ENST00000573584 DEFB109BQ30KR1 87 aa12.69□□□□□ -0.38
NUP88-207ENST00000573584 TMEM30BQ3MIR4 351 aa12.69□□□□□ -0.38
NUP88-207ENST00000573584 GOLT1BQ9Y3E0 138 aa12.69□□□□□ -0.38
NUP88-207ENST00000573584 E7EUB6 86 aa12.68□□□□□ -0.38
NUP88-207ENST00000573584 APOA2P02652 100 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms