RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 GAR1Q9NY12 217 aaKnown RBP15.92■□□□□ 0.14
VPS53-210ENST00000571456 CCL24O00175 119 aa15.91■□□□□ 0.14
VPS53-210ENST00000571456 PRH1P02810 166 aa15.91■□□□□ 0.14
VPS53-210ENST00000571456 ZNF616Q08AN1 781 aa15.91■□□□□ 0.14
VPS53-210ENST00000571456 FHL3Q13643 280 aa15.91■□□□□ 0.14
VPS53-210ENST00000571456 EXOSC2Q13868 293 aaKnown RBP15.91■□□□□ 0.14
VPS53-210ENST00000571456 BSXQ3C1V8 233 aa15.91■□□□□ 0.14
VPS53-210ENST00000571456 PVRIGQ6DKI7 326 aa15.91■□□□□ 0.14
VPS53-210ENST00000571456 DTD1Q8TEA8 209 aa15.91■□□□□ 0.14
VPS53-210ENST00000571456 DPF1Q92782 380 aa15.91■□□□□ 0.14
VPS53-210ENST00000571456 ZP3P21754 424 aa15.9■□□□□ 0.14
VPS53-210ENST00000571456 NKX2-1P43699 371 aaPredicted RBP15.9■□□□□ 0.14
VPS53-210ENST00000571456 RPP30P78346 268 aaKnown RBP15.9■□□□□ 0.14
VPS53-210ENST00000571456 ID3Q02535 119 aa15.9■□□□□ 0.14
VPS53-210ENST00000571456 IAH1Q2TAA2 248 aaPredicted RBP15.9■□□□□ 0.14
VPS53-210ENST00000571456 C2orf83Q53S99 150 aa15.9■□□□□ 0.14
VPS53-210ENST00000571456 UXS1Q8NBZ7 420 aa15.9■□□□□ 0.14
VPS53-210ENST00000571456 SLC24A4Q8NFF2 622 aa15.9■□□□□ 0.14
VPS53-210ENST00000571456 OR11H1Q8NG94 326 aa15.9■□□□□ 0.14
VPS53-210ENST00000571456 OR1N2Q8NGR9 330 aa15.9■□□□□ 0.14
VPS53-210ENST00000571456 PEF1Q9UBV8 284 aaKnown RBP15.9■□□□□ 0.14
VPS53-210ENST00000571456 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP15.89■□□□□ 0.13
VPS53-210ENST00000571456 C7orf66A4D0T2 115 aa15.89■□□□□ 0.13
VPS53-210ENST00000571456 LINC01619G3V211 115 aa15.89■□□□□ 0.13
VPS53-210ENST00000571456 SYNGR2O43760 224 aa15.89■□□□□ 0.13
VPS53-210ENST00000571456 IGHV3-11P01762 117 aa15.89■□□□□ 0.13
VPS53-210ENST00000571456 C11orf87Q6NUJ2 197 aa15.89■□□□□ 0.13
VPS53-210ENST00000571456 GSG1LQ6UXU4 331 aa15.89■□□□□ 0.13
VPS53-210ENST00000571456 RAX2Q96IS3 184 aa15.89■□□□□ 0.13
VPS53-210ENST00000571456 RBKSQ9H477 322 aa15.89■□□□□ 0.13
VPS53-210ENST00000571456 WRBO00258 174 aa15.88■□□□□ 0.13
VPS53-210ENST00000571456 NDUFB8O95169 186 aa15.88■□□□□ 0.13
VPS53-210ENST00000571456 RNASE2P10153 161 aaKnown RBP15.88■□□□□ 0.13
VPS53-210ENST00000571456 SPINK9Q5DT21 86 aa15.88■□□□□ 0.13
VPS53-210ENST00000571456 C18orf65Q6ZTR6 163 aa15.88■□□□□ 0.13
VPS53-210ENST00000571456 ZBTB8BQ8NAP8 495 aaPredicted RBP15.88■□□□□ 0.13
VPS53-210ENST00000571456 WFDC9Q8NEX5 89 aa15.88■□□□□ 0.13
VPS53-210ENST00000571456 OR4D5Q8NGN0 318 aa15.88■□□□□ 0.13
VPS53-210ENST00000571456 RNASEH2CQ8TDP1 164 aaKnown RBP15.88■□□□□ 0.13
VPS53-210ENST00000571456 TXN2Q99757 166 aa15.88■□□□□ 0.13
VPS53-210ENST00000571456 FCGR2BP31994 310 aaPredicted RBP15.87■□□□□ 0.13
VPS53-210ENST00000571456 TATDN3Q17R31 274 aa15.87■□□□□ 0.13
VPS53-210ENST00000571456 ETV3LQ6ZN32 361 aa15.87■□□□□ 0.13
VPS53-210ENST00000571456 OR10C1Q96KK4 312 aa15.87■□□□□ 0.13
VPS53-210ENST00000571456 C2orf50Q96LR7 162 aa15.87■□□□□ 0.13
VPS53-210ENST00000571456 MCRIP2Q9BUT9 160 aaKnown RBP15.87■□□□□ 0.13
VPS53-210ENST00000571456 AURKAIP1Q9NWT8 199 aaPredicted RBP15.87■□□□□ 0.13
VPS53-210ENST00000571456 DMRT1Q9Y5R6 373 aa15.87■□□□□ 0.13
VPS53-210ENST00000571456 RPS10-NUDT3A0A1W2PQS6 291 aa15.86■□□□□ 0.13
VPS53-210ENST00000571456 C5orf51A6NDU8 294 aa15.86■□□□□ 0.13
VPS53-210ENST00000571456 SPNP16150 400 aa15.86■□□□□ 0.13
VPS53-210ENST00000571456 NPY1RP25929 384 aa15.86■□□□□ 0.13
VPS53-210ENST00000571456 MFAP2P55001 183 aa15.86■□□□□ 0.13
VPS53-210ENST00000571456 CYCSP99999 105 aaKnown RBP15.86■□□□□ 0.13
VPS53-210ENST00000571456 OXA1LQ15070 435 aa15.86■□□□□ 0.13
VPS53-210ENST00000571456 ETFRF1Q6IPR1 90 aa15.86■□□□□ 0.13
VPS53-210ENST00000571456 C19orf35Q6ZS72 473 aa15.86■□□□□ 0.13
VPS53-210ENST00000571456 ZNF502Q8TBZ5 544 aa15.86■□□□□ 0.13
VPS53-210ENST00000571456 OR5B12Q96R08 314 aa15.86■□□□□ 0.13
VPS53-210ENST00000571456 RAB40CQ96S21 281 aa15.86■□□□□ 0.13
VPS53-210ENST00000571456 GPR61Q9BZJ8 451 aa15.86■□□□□ 0.13
VPS53-210ENST00000571456 C21orf62Q9NYP8 219 aa15.86■□□□□ 0.13
VPS53-210ENST00000571456 MPTX1A8MV57 137 aa15.85■□□□□ 0.13
VPS53-210ENST00000571456 FAM25EA8MYX2 175 aa15.85■□□□□ 0.13
VPS53-210ENST00000571456 SSNA1O43805 119 aa15.85■□□□□ 0.13
VPS53-210ENST00000571456 SCGB2A1O75556 95 aa15.85■□□□□ 0.13
VPS53-210ENST00000571456 IFNA10P01566 189 aa15.85■□□□□ 0.13
VPS53-210ENST00000571456 TAS2R30P59541 319 aa15.85■□□□□ 0.13
VPS53-210ENST00000571456 DEFB136Q30KP8 78 aa15.85■□□□□ 0.13
VPS53-210ENST00000571456 SPSB3Q6PJ21 355 aa15.85■□□□□ 0.13
VPS53-210ENST00000571456 LINC00482Q8N8I6 264 aa15.85■□□□□ 0.13
VPS53-210ENST00000571456 SCARB1Q8WTV0 552 aa15.85■□□□□ 0.13
VPS53-210ENST00000571456 MISP3Q96FF7 219 aa15.85■□□□□ 0.13
VPS53-210ENST00000571456 WWC2-AS2Q96NR7 200 aa15.85■□□□□ 0.13
VPS53-210ENST00000571456 I3L2K1 104 aa15.84■□□□□ 0.13
VPS53-210ENST00000571456 K7EIM0 57 aa15.84■□□□□ 0.13
VPS53-210ENST00000571456 NXPH3O95157 252 aa15.84■□□□□ 0.13
VPS53-210ENST00000571456 CD33P20138 364 aa15.84■□□□□ 0.13
VPS53-210ENST00000571456 MFAP4P55083 255 aa15.84■□□□□ 0.13
VPS53-210ENST00000571456 RAB11AP62491 216 aa15.84■□□□□ 0.13
VPS53-210ENST00000571456 BSCL2Q96G97 398 aaPredicted RBP15.84■□□□□ 0.13
VPS53-210ENST00000571456 RCC1LQ96I51 464 aaKnown RBP15.84■□□□□ 0.13
VPS53-210ENST00000571456 GSKIPQ9P0R6 139 aa15.84■□□□□ 0.13
VPS53-210ENST00000571456 IGHV4OR15-8A0A075B7B6 117 aa15.83■□□□□ 0.12
VPS53-210ENST00000571456 A0A087WW49 117 aa15.83■□□□□ 0.12
VPS53-210ENST00000571456 MFSD2BA6NFX1 497 aa15.83■□□□□ 0.12
VPS53-210ENST00000571456 GGCTO75223 188 aaKnown RBP15.83■□□□□ 0.12
VPS53-210ENST00000571456 SCAF4O95104 1147 aaKnown RBP15.83■□□□□ 0.12
VPS53-210ENST00000571456 MT-CO2P00403 227 aa15.83■□□□□ 0.12
VPS53-210ENST00000571456 SLC25A4P12235 298 aa15.83■□□□□ 0.12
VPS53-210ENST00000571456 NPBWR1P48145 328 aa15.83■□□□□ 0.12
VPS53-210ENST00000571456 RPEL1Q2QD12 228 aa15.83■□□□□ 0.12
VPS53-210ENST00000571456 OXLD1Q5BKU9 147 aa15.83■□□□□ 0.12
VPS53-210ENST00000571456 SMIM8Q96KF7 97 aa15.83■□□□□ 0.12
VPS53-210ENST00000571456 CCDC140Q96MF4 163 aa15.83■□□□□ 0.12
VPS53-210ENST00000571456 RYR2Q92736 4967 aa15.83■□□□□ 0.12
VPS53-210ENST00000571456 ANKRD34BA5PLL1 514 aa15.82■□□□□ 0.12
VPS53-210ENST00000571456 CCSO14618 274 aa15.82■□□□□ 0.12
VPS53-210ENST00000571456 OPRK1P41145 380 aa15.82■□□□□ 0.12
VPS53-210ENST00000571456 NMES1Q9C002 83 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms