RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 SPINK9Q5DT21 86 aa5.07□□□□□ -1.6
VPS53-209ENST00000570771 ETFRF1Q6IPR1 90 aa5.07□□□□□ -1.6
VPS53-209ENST00000570771 C10orf99Q6UWK7 81 aa5.07□□□□□ -1.6
VPS53-209ENST00000570771 TMEM252Q8N6L7 170 aa5.07□□□□□ -1.6
VPS53-209ENST00000570771 ZNF114Q8NC26 417 aa5.07□□□□□ -1.6
VPS53-209ENST00000570771 OR10P1Q8NGE3 313 aa5.07□□□□□ -1.6
VPS53-209ENST00000570771 OR1S2Q8NGQ3 325 aa5.07□□□□□ -1.6
VPS53-209ENST00000570771 RNASEH2CQ8TDP1 164 aaKnown RBP5.07□□□□□ -1.6
VPS53-209ENST00000570771 PINX1Q96BK5 328 aaKnown RBP5.07□□□□□ -1.6
VPS53-209ENST00000570771 MDFIQ99750 246 aa5.07□□□□□ -1.6
VPS53-209ENST00000570771 ZNF702PQ9H963 129 aa5.07□□□□□ -1.6
VPS53-209ENST00000570771 THYN1Q9P016 225 aa5.07□□□□□ -1.6
VPS53-209ENST00000570771 FBXO7Q9Y3I1 522 aa5.07□□□□□ -1.6
VPS53-209ENST00000570771 HSPB11Q9Y547 144 aa5.07□□□□□ -1.6
VPS53-209ENST00000570771 BORCS7-ASMTA0A0B4J1R7 106 aa5.06□□□□□ -1.6
VPS53-209ENST00000570771 TRAV41A0A0B4J266 112 aa5.06□□□□□ -1.6
VPS53-209ENST00000570771 A0A1B0GW64 132 aa5.06□□□□□ -1.6
VPS53-209ENST00000570771 IGLC7A0M8Q6 106 aa5.06□□□□□ -1.6
VPS53-209ENST00000570771 FAM24AA6NFZ4 105 aa5.06□□□□□ -1.6
VPS53-209ENST00000570771 TEX22C9J3V5 150 aa5.06□□□□□ -1.6
VPS53-209ENST00000570771 G3V3Q6 166 aa5.06□□□□□ -1.6
VPS53-209ENST00000570771 H3BP45 60 aa5.06□□□□□ -1.6
VPS53-209ENST00000570771 BOLA2-SMG1P6H3BVE0 249 aa5.06□□□□□ -1.6
VPS53-209ENST00000570771 ATP6V0E1O15342 81 aa5.06□□□□□ -1.6
VPS53-209ENST00000570771 PAX4O43316 350 aa5.06□□□□□ -1.6
VPS53-209ENST00000570771 TCF21O43680 179 aa5.06□□□□□ -1.6
VPS53-209ENST00000570771 SCGB2A1O75556 95 aa5.06□□□□□ -1.6
VPS53-209ENST00000570771 IGF1P05019 195 aa5.06□□□□□ -1.6
VPS53-209ENST00000570771 RNASE1P07998 156 aaKnown RBP5.06□□□□□ -1.6
VPS53-209ENST00000570771 METTL15P1P0C7V9 234 aa5.06□□□□□ -1.6
VPS53-209ENST00000570771 HKR1P10072 659 aa5.06□□□□□ -1.6
VPS53-209ENST00000570771 PAX9P55771 341 aa5.06□□□□□ -1.6
VPS53-209ENST00000570771 EWSR1Q01844 656 aaKnown RBP eCLIP5.06□□□□□ -1.6
VPS53-209ENST00000570771 EXOSC2Q13868 293 aaKnown RBP5.06□□□□□ -1.6
VPS53-209ENST00000570771 ZNF266Q14584 549 aa5.06□□□□□ -1.6
VPS53-209ENST00000570771 Q5BKY6 102 aa5.06□□□□□ -1.6
VPS53-209ENST00000570771 C10orf55Q5SWW7 151 aa5.06□□□□□ -1.6
VPS53-209ENST00000570771 UNQ5815/PRO19632Q6UWF5 114 aa5.06□□□□□ -1.6
VPS53-209ENST00000570771 TMEM14EPQ6UXP3 125 aa5.06□□□□□ -1.6
VPS53-209ENST00000570771 ETV3LQ6ZN32 361 aa5.06□□□□□ -1.6
VPS53-209ENST00000570771 C19orf35Q6ZS72 473 aa5.06□□□□□ -1.6
VPS53-209ENST00000570771 Q6ZSV7 163 aa5.06□□□□□ -1.6
VPS53-209ENST00000570771 TMUB2Q71RG4 321 aa5.06□□□□□ -1.6
VPS53-209ENST00000570771 STPG2Q8N412 459 aa5.06□□□□□ -1.6
VPS53-209ENST00000570771 LILRB2Q8N423 598 aa5.06□□□□□ -1.6
VPS53-209ENST00000570771 KCNRGQ8N5I3 272 aa5.06□□□□□ -1.6
VPS53-209ENST00000570771 TTC9CQ8N5M4 171 aa5.06□□□□□ -1.6
VPS53-209ENST00000570771 OR11H4Q8NGC9 324 aa5.06□□□□□ -1.6
VPS53-209ENST00000570771 OR10W1Q8NGF6 305 aa5.06□□□□□ -1.6
VPS53-209ENST00000570771 OR1P1Q8NH06 330 aa5.06□□□□□ -1.6
VPS53-209ENST00000570771 OR2T6Q8NHC8 308 aa5.06□□□□□ -1.6
VPS53-209ENST00000570771 ARPC5LQ9BPX5 153 aa5.06□□□□□ -1.6
VPS53-209ENST00000570771 HSPB9Q9BQS6 159 aa5.06□□□□□ -1.6
VPS53-209ENST00000570771 GGACTQ9BVM4 153 aa5.06□□□□□ -1.6
VPS53-209ENST00000570771 ARL6Q9H0F7 186 aa5.06□□□□□ -1.6
VPS53-209ENST00000570771 C11orf1Q9H5F2 150 aa5.06□□□□□ -1.6
VPS53-209ENST00000570771 F11RQ9Y624 299 aaKnown RBP5.06□□□□□ -1.6
VPS53-209ENST00000570771 DNAH3Q8TD57 4116 aa5.05□□□□□ -1.6
VPS53-209ENST00000570771 IGSF23A1L1A6 192 aa5.05□□□□□ -1.6
VPS53-209ENST00000570771 TMEM89A2RUT3 159 aa5.05□□□□□ -1.6
VPS53-209ENST00000570771 RNF222A6NCQ9 220 aa5.05□□□□□ -1.6
VPS53-209ENST00000570771 CGB1A6NKQ9 187 aa5.05□□□□□ -1.6
VPS53-209ENST00000570771 C15orf62A8K5M9 175 aa5.05□□□□□ -1.6
VPS53-209ENST00000570771 FNDC10F2Z333 226 aa5.05□□□□□ -1.6
VPS53-209ENST00000570771 H3BUA1 57 aa5.05□□□□□ -1.6
VPS53-209ENST00000570771 BCL2L11O43521 198 aa5.05□□□□□ -1.6
VPS53-209ENST00000570771 FBXO24O75426 580 aa5.05□□□□□ -1.6
VPS53-209ENST00000570771 JTBO76095 146 aa5.05□□□□□ -1.6
VPS53-209ENST00000570771 CST7O76096 145 aa5.05□□□□□ -1.6
VPS53-209ENST00000570771 TMEM50AO95807 157 aa5.05□□□□□ -1.6
VPS53-209ENST00000570771 IFNA5P01569 189 aa5.05□□□□□ -1.6
VPS53-209ENST00000570771 CRYGCP07315 174 aa5.05□□□□□ -1.6
VPS53-209ENST00000570771 RNASE2P10153 161 aaKnown RBP5.05□□□□□ -1.6
VPS53-209ENST00000570771 AREGP15514 252 aa5.05□□□□□ -1.6
VPS53-209ENST00000570771 CTRB1P17538 263 aa5.05□□□□□ -1.6
VPS53-209ENST00000570771 GPX4P36969 197 aaPredicted RBP5.05□□□□□ -1.6
VPS53-209ENST00000570771 SLC35B1P78383 322 aa5.05□□□□□ -1.6
VPS53-209ENST00000570771 DLK1P80370 383 aa5.05□□□□□ -1.6
VPS53-209ENST00000570771 WT1-ASQ06250 92 aa5.05□□□□□ -1.6
VPS53-209ENST00000570771 SLC38A11Q08AI6 406 aa5.05□□□□□ -1.6
VPS53-209ENST00000570771 ECSCRQ19T08 205 aa5.05□□□□□ -1.6
VPS53-209ENST00000570771 BSXQ3C1V8 233 aa5.05□□□□□ -1.6
VPS53-209ENST00000570771 CTRB2Q6GPI1 263 aa5.05□□□□□ -1.6
VPS53-209ENST00000570771 OR8G2PQ6IF36 304 aa5.05□□□□□ -1.6
VPS53-209ENST00000570771 SLC25A24Q6NUK1 477 aa5.05□□□□□ -1.6
VPS53-209ENST00000570771 C9orf62Q8N4C0 152 aa5.05□□□□□ -1.6
VPS53-209ENST00000570771 LFNGQ8NES3 379 aa5.05□□□□□ -1.6
VPS53-209ENST00000570771 FAM110DQ8TAY7 271 aaPredicted RBP5.05□□□□□ -1.6
VPS53-209ENST00000570771 CACNG8Q8WXS5 425 aa5.05□□□□□ -1.6
VPS53-209ENST00000570771 SLC35E1Q96K37 410 aa5.05□□□□□ -1.6
VPS53-209ENST00000570771 OR4C12Q96R67 309 aa5.05□□□□□ -1.6
VPS53-209ENST00000570771 P2RX4Q99571 388 aa5.05□□□□□ -1.6
VPS53-209ENST00000570771 FAM103A1Q9BTL3 118 aaKnown RBP5.05□□□□□ -1.6
VPS53-209ENST00000570771 TMEM147Q9BVK8 224 aa5.05□□□□□ -1.6
VPS53-209ENST00000570771 WNT10AQ9GZT5 417 aa5.05□□□□□ -1.6
VPS53-209ENST00000570771 ZNF355PQ9NSJ1 428 aa5.05□□□□□ -1.6
VPS53-209ENST00000570771 E7EUB6 86 aa5.04□□□□□ -1.6
VPS53-209ENST00000570771 MPDU1O75352 247 aa5.04□□□□□ -1.6
VPS53-209ENST00000570771 BRI3O95415 125 aa5.04□□□□□ -1.6
VPS53-209ENST00000570771 REG1AP05451 166 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms