RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 DMXL1Q9Y485 3027 aa9.01□□□□□ -0.97
CLK3-226ENST00000569406 IGLV3-32A0A0A0MS00 114 aa9.01□□□□□ -0.97
CLK3-226ENST00000569406 SMIM9A6NGZ8 99 aa9.01□□□□□ -0.97
CLK3-226ENST00000569406 FOXH1O75593 365 aa9.01□□□□□ -0.97
CLK3-226ENST00000569406 RPS18P62269 152 aaKnown RBP9.01□□□□□ -0.97
CLK3-226ENST00000569406 MRPL23Q16540 153 aaKnown RBP9.01□□□□□ -0.97
CLK3-226ENST00000569406 SLC25A53Q5H9E4 307 aa9.01□□□□□ -0.97
CLK3-226ENST00000569406 TMEM136Q6ZRR5 245 aa9.01□□□□□ -0.97
CLK3-226ENST00000569406 OR4A16Q8NH70 328 aa9.01□□□□□ -0.97
CLK3-226ENST00000569406 OR4C12Q96R67 309 aa9.01□□□□□ -0.97
CLK3-226ENST00000569406 TRBV20OR9-2A0A075B6H5 130 aa9□□□□□ -0.97
CLK3-226ENST00000569406 C3orf80F5H4A9 247 aa9□□□□□ -0.97
CLK3-226ENST00000569406 SPINK2P20155 84 aa9□□□□□ -0.97
CLK3-226ENST00000569406 ASCL4Q6XD76 172 aa9□□□□□ -0.97
CLK3-226ENST00000569406 CACNA1GO43497 2377 aa9□□□□□ -0.97
CLK3-226ENST00000569406 ZDBF2Q9HCK1 2354 aa9□□□□□ -0.97
CLK3-226ENST00000569406 CTXND1A0A1B0GTU2 59 aa9□□□□□ -0.97
CLK3-226ENST00000569406 IGHV3-7P01780 117 aa9□□□□□ -0.97
CLK3-226ENST00000569406 NHLRC4P0CG21 123 aaPredicted RBP9□□□□□ -0.97
CLK3-226ENST00000569406 SMIM13P0DJ93 91 aa9□□□□□ -0.97
CLK3-226ENST00000569406 NTF4P34130 210 aa9□□□□□ -0.97
CLK3-226ENST00000569406 MFAP5Q13361 173 aa9□□□□□ -0.97
CLK3-226ENST00000569406 VWC2Q2TAL6 325 aa9□□□□□ -0.97
CLK3-226ENST00000569406 MRPL14Q6P1L8 145 aaKnown RBP9□□□□□ -0.97
CLK3-226ENST00000569406 OR5AN1Q8NGI8 311 aa9□□□□□ -0.97
CLK3-226ENST00000569406 LINC00312Q9Y6C7 94 aa9□□□□□ -0.97
CLK3-226ENST00000569406 ZNF407Q9C0G0 2248 aa9□□□□□ -0.97
CLK3-226ENST00000569406 C3orf85A0A1B0GTC6 90 aa8.99□□□□□ -0.97
CLK3-226ENST00000569406 NPIPB13A6NJU9 1138 aa8.99□□□□□ -0.97
CLK3-226ENST00000569406 LIPT2A6NK58 231 aa8.99□□□□□ -0.97
CLK3-226ENST00000569406 NPIPB4C9JG80 1138 aa8.99□□□□□ -0.97
CLK3-226ENST00000569406 TMPRSS2O15393 492 aa8.99□□□□□ -0.97
CLK3-226ENST00000569406 DHHO43323 396 aa8.99□□□□□ -0.97
CLK3-226ENST00000569406 COX8AP10176 69 aa8.99□□□□□ -0.97
CLK3-226ENST00000569406 RPL8P62917 257 aaKnown RBP8.99□□□□□ -0.97
CLK3-226ENST00000569406 TTC32Q5I0X7 151 aa8.99□□□□□ -0.97
CLK3-226ENST00000569406 CRIP3Q6Q6R5 217 aa8.99□□□□□ -0.97
CLK3-226ENST00000569406 LEPROTL1O95214 131 aa8.99□□□□□ -0.97
CLK3-226ENST00000569406 FXYD3Q14802 87 aa8.99□□□□□ -0.97
CLK3-226ENST00000569406 MEIG1Q5JSS6 88 aa8.99□□□□□ -0.97
CLK3-226ENST00000569406 Q6AWC8 147 aa8.99□□□□□ -0.97
CLK3-226ENST00000569406 H1FNTQ75WM6 255 aaPredicted RBP8.99□□□□□ -0.97
CLK3-226ENST00000569406 PROK2Q9HC23 129 aa8.99□□□□□ -0.97
CLK3-226ENST00000569406 OCIAD1Q9NX40 245 aa8.99□□□□□ -0.97
CLK3-226ENST00000569406 NCOR1O75376 2440 aa8.99□□□□□ -0.97
CLK3-226ENST00000569406 FOXI3A8MTJ6 420 aaPredicted RBP8.99□□□□□ -0.97
CLK3-226ENST00000569406 K7ERJ3 54 aa8.99□□□□□ -0.97
CLK3-226ENST00000569406 CXorf1O96002 111 aa8.99□□□□□ -0.97
CLK3-226ENST00000569406 GCSHP23434 173 aa8.99□□□□□ -0.97
CLK3-226ENST00000569406 PDLIM3Q53GG5 364 aaPredicted RBP8.99□□□□□ -0.97
CLK3-226ENST00000569406 NRGNQ92686 78 aa8.99□□□□□ -0.97
CLK3-226ENST00000569406 F11RQ9Y624 299 aaKnown RBP8.99□□□□□ -0.97
CLK3-226ENST00000569406 ROS1P08922 2347 aa8.98□□□□□ -0.97
CLK3-226ENST00000569406 A0A1W2PRD5 423 aa8.98□□□□□ -0.97
CLK3-226ENST00000569406 A0A1W2PRF3 423 aa8.98□□□□□ -0.97
CLK3-226ENST00000569406 A0A1W2PRM7 423 aa8.98□□□□□ -0.97
CLK3-226ENST00000569406 E9PLN8 166 aa8.98□□□□□ -0.97
CLK3-226ENST00000569406 CELA2AP08217 269 aa8.98□□□□□ -0.97
CLK3-226ENST00000569406 ARL16Q0P5N6 197 aa8.98□□□□□ -0.97
CLK3-226ENST00000569406 KLRD1Q13241 179 aa8.98□□□□□ -0.97
CLK3-226ENST00000569406 GAGE13Q4V321 117 aa8.98□□□□□ -0.97
CLK3-226ENST00000569406 C1orf210Q8IVY1 113 aa8.98□□□□□ -0.97
CLK3-226ENST00000569406 ST8SIA1Q92185 356 aa8.98□□□□□ -0.97
CLK3-226ENST00000569406 MRPS17Q9Y2R5 130 aaKnown RBP8.98□□□□□ -0.97
CLK3-226ENST00000569406 SPTBN2O15020 2390 aa8.98□□□□□ -0.97
CLK3-226ENST00000569406 TRAV9-1A0A075B6T8 112 aa8.98□□□□□ -0.97
CLK3-226ENST00000569406 HLA-DQA1P01909 254 aa8.98□□□□□ -0.97
CLK3-226ENST00000569406 PSG7Q13046 419 aa8.98□□□□□ -0.97
CLK3-226ENST00000569406 ZNF146Q15072 292 aa8.98□□□□□ -0.97
CLK3-226ENST00000569406 IZUMO4Q1ZYL8 232 aa8.98□□□□□ -0.97
CLK3-226ENST00000569406 FAM159AQ6UWV7 190 aa8.98□□□□□ -0.97
CLK3-226ENST00000569406 PRELID3AQ96N28 172 aa8.98□□□□□ -0.97
CLK3-226ENST00000569406 KIR2DL4Q99706 377 aa8.98□□□□□ -0.97
CLK3-226ENST00000569406 PRDM6Q9NQX0 595 aa8.98□□□□□ -0.97
CLK3-226ENST00000569406 TNFRSF19Q9NS68 423 aa8.98□□□□□ -0.97
CLK3-226ENST00000569406 CHCHD2Q9Y6H1 151 aaPredicted RBP8.98□□□□□ -0.97
CLK3-226ENST00000569406 hADV38S2A0JD32 116 aa8.98□□□□□ -0.97
CLK3-226ENST00000569406 SPRY1O43609 319 aaPredicted RBP8.98□□□□□ -0.97
CLK3-226ENST00000569406 CXCL12P48061 93 aa8.98□□□□□ -0.97
CLK3-226ENST00000569406 DIAPH2-AS1Q14236 149 aa8.98□□□□□ -0.97
CLK3-226ENST00000569406 TMEM42Q69YG0 159 aa8.98□□□□□ -0.97
CLK3-226ENST00000569406 ZNF525Q8N782 197 aa8.98□□□□□ -0.97
CLK3-226ENST00000569406 TMEM54Q969K7 222 aa8.98□□□□□ -0.97
CLK3-226ENST00000569406 MBD6Q96DN6 1003 aa8.98□□□□□ -0.97
CLK3-226ENST00000569406 C1QTNF5Q9BXJ0 243 aa8.98□□□□□ -0.97
CLK3-226ENST00000569406 HES4Q9HCC6 221 aa8.98□□□□□ -0.97
CLK3-226ENST00000569406 ZNF331Q9NQX6 463 aaPredicted RBP8.98□□□□□ -0.97
CLK3-226ENST00000569406 IGHV3-15A0A0B4J1V0 119 aa8.97□□□□□ -0.97
CLK3-226ENST00000569406 SCRG1O75711 98 aa8.97□□□□□ -0.97
CLK3-226ENST00000569406 IGHG1P01857 330 aa8.97□□□□□ -0.97
CLK3-226ENST00000569406 EIF3IQ13347 325 aaKnown RBP8.97□□□□□ -0.97
CLK3-226ENST00000569406 GUSBP1Q15486 140 aa8.97□□□□□ -0.97
CLK3-226ENST00000569406 SPANXN5Q5MJ07 72 aa8.97□□□□□ -0.97
CLK3-226ENST00000569406 MS4A6AQ9H2W1 248 aa8.97□□□□□ -0.97
CLK3-226ENST00000569406 MPC1Q9Y5U8 109 aa8.97□□□□□ -0.97
CLK3-226ENST00000569406 TRAV5A0A0B4J249 113 aa8.97□□□□□ -0.97
CLK3-226ENST00000569406 LOC107984640A0A0U1RRK4 108 aa8.97□□□□□ -0.97
CLK3-226ENST00000569406 A1L4Q6 167 aa8.97□□□□□ -0.97
CLK3-226ENST00000569406 C5orf63A6NC05 138 aa8.97□□□□□ -0.97
CLK3-226ENST00000569406 ATP5IP56385 69 aaPredicted RBP8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms