RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 ATOH7Q8N100 152 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 TPRX1Q8N7U7 411 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 GATD1Q8NB37 220 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 ZNF740Q8NDX6 193 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 MDS2Q8NDY4 140 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 VN1R2Q8NFZ6 395 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 OTOSQ8NHW6 89 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 RPS4Y2Q8TD47 263 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 C2orf15Q8WU43 125 aaKnown RBP2.63□□□□□ -1.99
VPS35-208ENST00000568612 APOBEC4Q8WW27 367 aaKnown RBP2.63□□□□□ -1.99
VPS35-208ENST00000568612 SLC25A44Q96H78 314 aaPredicted RBP2.63□□□□□ -1.99
VPS35-208ENST00000568612 PRELID3AQ96N28 172 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 MCHR1Q99705 422 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 KIR2DL4Q99706 377 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 SMIM7Q9BQ49 75 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 FAM103A1Q9BTL3 118 aaKnown RBP2.63□□□□□ -1.99
VPS35-208ENST00000568612 SPANXDQ9BXN6 97 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 DEFB129Q9H1M3 183 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 C5orf66Q9H5L9 145 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 GAGE2DQ9UEU5 116 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 RABAC1Q9UI14 185 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 NSG2Q9Y328 171 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 OR1A2Q9Y585 309 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 V9GY05 133 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 CASP8AP2Q9UKL3 1982 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 DOCK6Q96HP0 2047 aa2.63□□□□□ -1.99
VPS35-208ENST00000568612 NUP210Q8TEM1 1887 aaPredicted RBP2.62□□□□□ -1.99
VPS35-208ENST00000568612 VWA8A3KMH1 1905 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 A0A087X0K7 114 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 IGHV4-28A0A0C4DH34 117 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 A0A1B0GV50 99 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 A0A1W2PS18 150 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 C1orf226A1L170 272 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 ZNF732B4DXR9 585 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 F2Z2F3 143 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 PTGESO14684 152 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 TIMM23O14925 209 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 CRXO43186 299 aaPredicted RBP2.62□□□□□ -1.99
VPS35-208ENST00000568612 ZIC3O60481 467 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 SNCGO76070 127 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 IGHMP01871 453 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 IGLC6P0CF74 106 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 BCL3P20749 454 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 PRDX3P30048 256 aaKnown RBP2.62□□□□□ -1.99
VPS35-208ENST00000568612 PTGDSP41222 190 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 ASIPP42127 132 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 NKX2-1P43699 371 aaPredicted RBP2.62□□□□□ -1.99
VPS35-208ENST00000568612 HERVK_113P63121 156 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 SLC38A11Q08AI6 406 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 WFDC2Q14508 124 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 IHHQ14623 411 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 STPG1Q5TH74 334 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 SLC35E4Q6ICL7 350 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 TRIM40Q6P9F5 258 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 TMEM136Q6ZRR5 245 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 GOLT1AQ6ZVE7 132 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 ZNF550Q7Z398 422 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 TRPT1Q86TN4 253 aaKnown RBP2.62□□□□□ -1.99
VPS35-208ENST00000568612 ZNF584Q8IVC4 421 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 ABHD12Q8N2K0 398 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 TMEM86AQ8N2M4 240 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 CLDN19Q8N6F1 224 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 TMEM99Q8N816 258 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 ZFP62Q8NB50 900 aaPredicted RBP2.62□□□□□ -1.99
VPS35-208ENST00000568612 OR11H6Q8NGC7 330 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 OR4X2Q8NGF9 303 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 OR51H1Q8NH63 302 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 SCGB1C1Q8TD33 95 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 PPDPFLQ8WWR9 84 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 BADQ92934 168 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 CLDN23Q96B33 292 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 C9orf85Q96MD7 179 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 OR2A5Q96R48 311 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 ATP5SQ99766 215 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 CLEC7AQ9BXN2 247 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 SLC25A39Q9BZJ4 359 aaPredicted RBP2.62□□□□□ -1.99
VPS35-208ENST00000568612 TMEM191AQ9H0A3 160 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 NAA60Q9H7X0 242 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 GNB4Q9HAV0 340 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 TP73-AS1Q9UF72 201 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 OR2W1Q9Y3N9 320 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 PLXNB2O15031 1838 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 NUP98P52948 1817 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 OBSL1O75147 1896 aa2.62□□□□□ -1.99
VPS35-208ENST00000568612 RAI1Q7Z5J4 1906 aaPredicted RBP2.62□□□□□ -1.99
VPS35-208ENST00000568612 TRBV20-1A0A075B6N2 111 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 NSG1A0A0A6YYJ2 146 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 TRAV5A0A0B4J249 113 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 DAPL1A0PJW8 107 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 C2orf70A6NJV1 201 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 E9PLD3 99 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 C11orf98E9PRG8 122 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 LY6LH3BQJ8 138 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 SDCBPO00560 298 aaPredicted RBP2.61□□□□□ -1.99
VPS35-208ENST00000568612 SLC17A2O00624 439 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 FFAR1O14842 300 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 LDB3O75112 727 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 PGLYRP1O75594 196 aaPredicted RBP2.61□□□□□ -1.99
VPS35-208ENST00000568612 NCR2O95944 276 aa2.61□□□□□ -1.99
VPS35-208ENST00000568612 NAPSAO96009 420 aa2.61□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms