RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 IGHV3-23P01764 117 aa13.28□□□□□ -0.28
CLN3-217ENST00000565354 GGNBP1Q5YKI7 109 aa13.28□□□□□ -0.28
CLN3-217ENST00000565354 OR52B4Q8NGK2 314 aa13.28□□□□□ -0.28
CLN3-217ENST00000565354 OR1P1Q8NH06 330 aa13.28□□□□□ -0.28
CLN3-217ENST00000565354 MISP3Q96FF7 219 aa13.28□□□□□ -0.28
CLN3-217ENST00000565354 HIPK2Q9H2X6 1198 aa13.28□□□□□ -0.28
CLN3-217ENST00000565354 STAB2Q8WWQ8 2551 aa13.27□□□□□ -0.28
CLN3-217ENST00000565354 RPEL1Q2QD12 228 aa13.27□□□□□ -0.29
CLN3-217ENST00000565354 PLET1Q6UQ28 207 aa13.27□□□□□ -0.29
CLN3-217ENST00000565354 CLEC19AQ6UXS0 136 aa13.27□□□□□ -0.29
CLN3-217ENST00000565354 UXS1Q8NBZ7 420 aa13.27□□□□□ -0.29
CLN3-217ENST00000565354 ZNF114Q8NC26 417 aa13.27□□□□□ -0.29
CLN3-217ENST00000565354 GPR61Q9BZJ8 451 aa13.27□□□□□ -0.29
CLN3-217ENST00000565354 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.26□□□□□ -0.29
CLN3-217ENST00000565354 TRBV7-1A0A0A6YYK4 115 aa13.26□□□□□ -0.29
CLN3-217ENST00000565354 IGHV3-21A0A0B4J1V1 117 aa13.26□□□□□ -0.29
CLN3-217ENST00000565354 MFSD2BA6NFX1 497 aa13.26□□□□□ -0.29
CLN3-217ENST00000565354 INS-IGF2F8WCM5 200 aa13.26□□□□□ -0.29
CLN3-217ENST00000565354 OVOL1O14753 267 aa13.26□□□□□ -0.29
CLN3-217ENST00000565354 ADAP1O75689 374 aa13.26□□□□□ -0.29
CLN3-217ENST00000565354 SLC25A6P12236 298 aa13.26□□□□□ -0.29
CLN3-217ENST00000565354 HOXD3P31249 432 aaPredicted RBP13.26□□□□□ -0.29
CLN3-217ENST00000565354 TNFRSF9Q07011 255 aa13.26□□□□□ -0.29
CLN3-217ENST00000565354 TATDN3Q17R31 274 aa13.26□□□□□ -0.29
CLN3-217ENST00000565354 KLK9Q2XQG4 91 aa13.26□□□□□ -0.29
CLN3-217ENST00000565354 AARDQ4LEZ3 155 aa13.26□□□□□ -0.29
CLN3-217ENST00000565354 NRARPQ7Z6K4 114 aa13.26□□□□□ -0.29
CLN3-217ENST00000565354 DCUN1D4Q92564 292 aa13.26□□□□□ -0.29
CLN3-217ENST00000565354 PINX1Q96BK5 328 aaKnown RBP13.26□□□□□ -0.29
CLN3-217ENST00000565354 SEC22CQ9BRL7 303 aa13.26□□□□□ -0.29
CLN3-217ENST00000565354 KLK9Q9UKQ9 250 aa13.26□□□□□ -0.29
CLN3-217ENST00000565354 TRBV12-3P01733 135 aa13.25□□□□□ -0.29
CLN3-217ENST00000565354 ARL3P36405 182 aa13.25□□□□□ -0.29
CLN3-217ENST00000565354 MFAP2P55001 183 aa13.25□□□□□ -0.29
CLN3-217ENST00000565354 EGFEM1PQ0D2K5 195 aa13.25□□□□□ -0.29
CLN3-217ENST00000565354 VN1R17PQ8TDU5 208 aa13.25□□□□□ -0.29
CLN3-217ENST00000565354 ZNF431Q8TF32 576 aaPredicted RBP13.25□□□□□ -0.29
CLN3-217ENST00000565354 MITD1Q8WV92 249 aa13.25□□□□□ -0.29
CLN3-217ENST00000565354 DLX4Q92988 240 aaPredicted RBP13.25□□□□□ -0.29
CLN3-217ENST00000565354 GPN1Q9HCN4 374 aaPredicted RBP13.25□□□□□ -0.29
CLN3-217ENST00000565354 HSPB7Q9UBY9 170 aa13.25□□□□□ -0.29
CLN3-217ENST00000565354 DMRT1Q9Y5R6 373 aa13.25□□□□□ -0.29
CLN3-217ENST00000565354 SEC14L6B5MCN3 397 aa13.24□□□□□ -0.29
CLN3-217ENST00000565354 PPP5D1E7EU14 171 aa13.24□□□□□ -0.29
CLN3-217ENST00000565354 CORTO00230 105 aa13.24□□□□□ -0.29
CLN3-217ENST00000565354 GGCTO75223 188 aaKnown RBP13.24□□□□□ -0.29
CLN3-217ENST00000565354 MED6O75586 246 aa13.24□□□□□ -0.29
CLN3-217ENST00000565354 HTR2BP41595 481 aa13.24□□□□□ -0.29
CLN3-217ENST00000565354 Q56UQ5 140 aa13.24□□□□□ -0.29
CLN3-217ENST00000565354 UBAC2Q8NBM4 344 aa13.24□□□□□ -0.29
CLN3-217ENST00000565354 DUSP18Q8NEJ0 188 aa13.24□□□□□ -0.29
CLN3-217ENST00000565354 DTD1Q8TEA8 209 aa13.24□□□□□ -0.29
CLN3-217ENST00000565354 RBKSQ9H477 322 aa13.24□□□□□ -0.29
CLN3-217ENST00000565354 FAM90A26D6RGX4 464 aa13.23□□□□□ -0.29
CLN3-217ENST00000565354 INMT-MINDY4F8WBC2 141 aa13.23□□□□□ -0.29
CLN3-217ENST00000565354 IFNA10P01566 189 aa13.23□□□□□ -0.29
CLN3-217ENST00000565354 RNASE2P10153 161 aaKnown RBP13.23□□□□□ -0.29
CLN3-217ENST00000565354 GPR183P32249 361 aa13.23□□□□□ -0.29
CLN3-217ENST00000565354 C9orf66Q5T8R8 295 aa13.23□□□□□ -0.29
CLN3-217ENST00000565354 NOXA1Q86UR1 476 aa13.23□□□□□ -0.29
CLN3-217ENST00000565354 C12orf45Q8N5I9 185 aaPredicted RBP13.23□□□□□ -0.29
CLN3-217ENST00000565354 SLC24A4Q8NFF2 622 aa13.23□□□□□ -0.29
CLN3-217ENST00000565354 ZNF502Q8TBZ5 544 aa13.23□□□□□ -0.29
CLN3-217ENST00000565354 CCDC140Q96MF4 163 aa13.23□□□□□ -0.29
CLN3-217ENST00000565354 C21orf62Q9NYP8 219 aa13.23□□□□□ -0.29
CLN3-217ENST00000565354 DYNC2H1Q8NCM8 4307 aaKnown RBP13.22□□□□□ -0.29
CLN3-217ENST00000565354 BMPR1BO00238 502 aa13.22□□□□□ -0.29
CLN3-217ENST00000565354 WRBO00258 174 aa13.22□□□□□ -0.29
CLN3-217ENST00000565354 MT-CO2P00403 227 aa13.22□□□□□ -0.29
CLN3-217ENST00000565354 IL5P05113 134 aa13.22□□□□□ -0.29
CLN3-217ENST00000565354 CLEC3BP05452 202 aa13.22□□□□□ -0.29
CLN3-217ENST00000565354 SYNJ2BPP57105 145 aa13.22□□□□□ -0.29
CLN3-217ENST00000565354 SCARB1Q8WTV0 552 aa13.22□□□□□ -0.29
CLN3-217ENST00000565354 ELOVL1Q9BW60 279 aa13.22□□□□□ -0.29
CLN3-217ENST00000565354 ZC4H2Q9NQZ6 224 aa13.22□□□□□ -0.29
CLN3-217ENST00000565354 GAR1Q9NY12 217 aaKnown RBP13.22□□□□□ -0.29
CLN3-217ENST00000565354 FAM25EA8MYX2 175 aa13.21□□□□□ -0.29
CLN3-217ENST00000565354 K7EIM0 57 aa13.21□□□□□ -0.29
CLN3-217ENST00000565354 PRAF2O60831 178 aa13.21□□□□□ -0.29
CLN3-217ENST00000565354 PITX3O75364 302 aa13.21□□□□□ -0.29
CLN3-217ENST00000565354 SAP30O75446 220 aa13.21□□□□□ -0.29
CLN3-217ENST00000565354 IAPPP10997 89 aa13.21□□□□□ -0.29
CLN3-217ENST00000565354 NPY1RP25929 384 aa13.21□□□□□ -0.29
CLN3-217ENST00000565354 OPRK1P41145 380 aa13.21□□□□□ -0.29
CLN3-217ENST00000565354 MFAP4P55083 255 aa13.21□□□□□ -0.29
CLN3-217ENST00000565354 DCTN2Q13561 401 aaKnown RBP13.21□□□□□ -0.29
CLN3-217ENST00000565354 IAH1Q2TAA2 248 aaPredicted RBP13.21□□□□□ -0.29
CLN3-217ENST00000565354 OR4C12Q96R67 309 aa13.21□□□□□ -0.29
CLN3-217ENST00000565354 U3KQ87 197 aa13.21□□□□□ -0.29
CLN3-217ENST00000565354 TENM2Q9NT68 2774 aa13.2□□□□□ -0.3
CLN3-217ENST00000565354 RPS10-NUDT3A0A1W2PQS6 291 aa13.2□□□□□ -0.3
CLN3-217ENST00000565354 C5orf51A6NDU8 294 aa13.2□□□□□ -0.3
CLN3-217ENST00000565354 OR2T8A6NH00 312 aa13.2□□□□□ -0.3
CLN3-217ENST00000565354 I3L2K1 104 aa13.2□□□□□ -0.3
CLN3-217ENST00000565354 CCSO14618 274 aa13.2□□□□□ -0.3
CLN3-217ENST00000565354 TGOLN2O43493 480 aa13.2□□□□□ -0.3
CLN3-217ENST00000565354 OR2C1O95371 312 aa13.2□□□□□ -0.3
CLN3-217ENST00000565354 SCGB1D2O95969 90 aa13.2□□□□□ -0.3
CLN3-217ENST00000565354 NKX2-1P43699 371 aaPredicted RBP13.2□□□□□ -0.3
CLN3-217ENST00000565354 KLF5Q13887 457 aaPredicted RBP13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms