RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 SNCAP37840 140 aa16.75■□□□□ 0.27
CLN3-215ENST00000565236 ALDH3B2P48448 385 aa16.75■□□□□ 0.27
CLN3-215ENST00000565236 TRIM16LQ309B1 348 aa16.75■□□□□ 0.27
CLN3-215ENST00000565236 SPINK9Q5DT21 86 aa16.75■□□□□ 0.27
CLN3-215ENST00000565236 STEAP1BQ6NZ63 245 aa16.75■□□□□ 0.27
CLN3-215ENST00000565236 UBQLN2Q9UHD9 624 aa16.75■□□□□ 0.27
CLN3-215ENST00000565236 SMPXQ9UHP9 88 aa16.75■□□□□ 0.27
CLN3-215ENST00000565236 A0A0B4J293 547 aa16.74■□□□□ 0.27
CLN3-215ENST00000565236 OR4C46A6NHA9 309 aa16.74■□□□□ 0.27
CLN3-215ENST00000565236 CTDSP2O14595 271 aa16.74■□□□□ 0.27
CLN3-215ENST00000565236 GNG7O60262 68 aa16.74■□□□□ 0.27
CLN3-215ENST00000565236 IFNA17P01571 189 aa16.74■□□□□ 0.27
CLN3-215ENST00000565236 SP6Q3SY56 376 aa16.74■□□□□ 0.27
CLN3-215ENST00000565236 SLC35G3Q8N808 338 aa16.74■□□□□ 0.27
CLN3-215ENST00000565236 OR13C8Q8NGS7 320 aa16.74■□□□□ 0.27
CLN3-215ENST00000565236 PDCD10Q9BUL8 212 aa16.74■□□□□ 0.27
CLN3-215ENST00000565236 MRPS10P82664 201 aaKnown RBP16.73■□□□□ 0.27
CLN3-215ENST00000565236 SSBP1Q04837 148 aaKnown RBP16.73■□□□□ 0.27
CLN3-215ENST00000565236 SPCS2Q15005 226 aa16.73■□□□□ 0.27
CLN3-215ENST00000565236 MARCH1Q8TCQ1 289 aa16.73■□□□□ 0.27
CLN3-215ENST00000565236 RRNAD1Q96FB5 475 aaKnown RBP16.73■□□□□ 0.27
CLN3-215ENST00000565236 NXF2Q9GZY0 626 aaKnown RBP16.73■□□□□ 0.27
CLN3-215ENST00000565236 LYSTQ99698 3801 aa16.73■□□□□ 0.27
CLN3-215ENST00000565236 IGHV7-4-1A0A0J9YVY3 117 aa16.72■□□□□ 0.27
CLN3-215ENST00000565236 ST8SIA3O43173 380 aa16.72■□□□□ 0.27
CLN3-215ENST00000565236 CTSDP07339 412 aaPredicted RBP16.72■□□□□ 0.27
CLN3-215ENST00000565236 P0C879 139 aa16.72■□□□□ 0.27
CLN3-215ENST00000565236 MEF2DQ14814 521 aa16.72■□□□□ 0.27
CLN3-215ENST00000565236 TMEM116Q8NCL8 245 aa16.72■□□□□ 0.27
CLN3-215ENST00000565236 RNASE11Q8TAA1 199 aaKnown RBP16.72■□□□□ 0.27
CLN3-215ENST00000565236 OVOL2Q9BRP0 275 aa16.72■□□□□ 0.27
CLN3-215ENST00000565236 RHPN1-AS1Q9BWJ2 59 aa16.72■□□□□ 0.27
CLN3-215ENST00000565236 B3GALNT1O75752 331 aa16.71■□□□□ 0.27
CLN3-215ENST00000565236 UCP1P25874 307 aa16.71■□□□□ 0.27
CLN3-215ENST00000565236 ETV6P41212 452 aa16.71■□□□□ 0.27
CLN3-215ENST00000565236 NPBWR1P48145 328 aa16.71■□□□□ 0.27
CLN3-215ENST00000565236 SUB1P53999 127 aaKnown RBP eCLIP16.71■□□□□ 0.27
CLN3-215ENST00000565236 APOC4P55056 127 aa16.71■□□□□ 0.27
CLN3-215ENST00000565236 CLVS1Q8IUQ0 354 aaPredicted RBP16.71■□□□□ 0.27
CLN3-215ENST00000565236 DUSP18Q8NEJ0 188 aa16.71■□□□□ 0.27
CLN3-215ENST00000565236 OR10C1Q96KK4 312 aa16.71■□□□□ 0.27
CLN3-215ENST00000565236 RNF2Q99496 336 aa16.71■□□□□ 0.27
CLN3-215ENST00000565236 C14orf166Q9Y224 244 aaKnown RBP16.71■□□□□ 0.27
CLN3-215ENST00000565236 IGHV3-49A0A0A0MS15 119 aa16.7■□□□□ 0.26
CLN3-215ENST00000565236 TRAV14DV4A0A0A6YYC5 116 aa16.7■□□□□ 0.26
CLN3-215ENST00000565236 INS-IGF2F8WCM5 200 aa16.7■□□□□ 0.26
CLN3-215ENST00000565236 CHEK1O14757 476 aa16.7■□□□□ 0.26
CLN3-215ENST00000565236 ODF3L2Q3SX64 289 aa16.7■□□□□ 0.26
CLN3-215ENST00000565236 DIRAS2Q96HU8 199 aa16.7■□□□□ 0.26
CLN3-215ENST00000565236 ZNF414Q96IQ9 312 aa16.7■□□□□ 0.26
CLN3-215ENST00000565236 ENY2Q9NPA8 101 aa16.7■□□□□ 0.26
CLN3-215ENST00000565236 DISC1C4P0D8 188 aa16.69■□□□□ 0.26
CLN3-215ENST00000565236 HOXA1P49639 335 aaPredicted RBP16.69■□□□□ 0.26
CLN3-215ENST00000565236 FAAP20Q6NZ36 180 aa16.69■□□□□ 0.26
CLN3-215ENST00000565236 RAB2BQ8WUD1 216 aa16.69■□□□□ 0.26
CLN3-215ENST00000565236 SMIM4Q8WVI0 70 aa16.69■□□□□ 0.26
CLN3-215ENST00000565236 GINS3Q9BRX5 216 aa16.69■□□□□ 0.26
CLN3-215ENST00000565236 TEX13DA0A0J9YY54 714 aaPredicted RBP16.68■□□□□ 0.26
CLN3-215ENST00000565236 IL18Q14116 193 aa16.68■□□□□ 0.26
CLN3-215ENST00000565236 Q6ZWC4 215 aa16.68■□□□□ 0.26
CLN3-215ENST00000565236 RTBDNQ9BSG5 229 aaPredicted RBP16.68■□□□□ 0.26
CLN3-215ENST00000565236 TMEM222Q9H0R3 208 aa16.68■□□□□ 0.26
CLN3-215ENST00000565236 RABL2AQ9UBK7 228 aaPredicted RBP16.68■□□□□ 0.26
CLN3-215ENST00000565236 RABL2BQ9UNT1 228 aa16.68■□□□□ 0.26
CLN3-215ENST00000565236 IGHV3OR16-13A0A075B7E8 117 aa16.67■□□□□ 0.26
CLN3-215ENST00000565236 IGHV3-74A0A0B4J1X5 117 aa16.67■□□□□ 0.26
CLN3-215ENST00000565236 CORTO00230 105 aa16.67■□□□□ 0.26
CLN3-215ENST00000565236 UBE2CO00762 179 aa16.67■□□□□ 0.26
CLN3-215ENST00000565236 AKAIN1P0CW23 69 aa16.67■□□□□ 0.26
CLN3-215ENST00000565236 RNASE2P10153 161 aaKnown RBP16.67■□□□□ 0.26
CLN3-215ENST00000565236 CMC4P56277 68 aaPredicted RBP16.67■□□□□ 0.26
CLN3-215ENST00000565236 TOMM20LQ6UXN7 152 aa16.67■□□□□ 0.26
CLN3-215ENST00000565236 STPG3Q8N7X2 389 aa16.67■□□□□ 0.26
CLN3-215ENST00000565236 IGKV3-7A0A075B6H7 116 aa16.66■□□□□ 0.26
CLN3-215ENST00000565236 KIR2DL5BA0A0G2JN68 375 aa16.66■□□□□ 0.26
CLN3-215ENST00000565236 KIR2DL5BA0A0G2JPC4 375 aa16.66■□□□□ 0.26
CLN3-215ENST00000565236 A0A0G2JRQ6 117 aa16.66■□□□□ 0.26
CLN3-215ENST00000565236 CTDSPLO15194 276 aa16.66■□□□□ 0.26
CLN3-215ENST00000565236 SPRY2O43597 315 aa16.66■□□□□ 0.26
CLN3-215ENST00000565236 CDS2O95674 445 aa16.66■□□□□ 0.26
CLN3-215ENST00000565236 TMEM50AO95807 157 aa16.66■□□□□ 0.26
CLN3-215ENST00000565236 OR5AC1P0C628 307 aa16.66■□□□□ 0.26
CLN3-215ENST00000565236 BMI1P35226 326 aa16.66■□□□□ 0.26
CLN3-215ENST00000565236 TFPI2P48307 235 aa16.66■□□□□ 0.26
CLN3-215ENST00000565236 TMBIM6P55061 237 aa16.66■□□□□ 0.26
CLN3-215ENST00000565236 SURF2Q15527 256 aaPredicted RBP16.66■□□□□ 0.26
CLN3-215ENST00000565236 PVRIGQ6DKI7 326 aa16.66■□□□□ 0.26
CLN3-215ENST00000565236 FAM219AQ8IW50 185 aa16.66■□□□□ 0.26
CLN3-215ENST00000565236 KIR2DL5AQ8N109 375 aa16.66■□□□□ 0.26
CLN3-215ENST00000565236 KIR2DL5BQ8NHK3 375 aa16.66■□□□□ 0.26
CLN3-215ENST00000565236 DYNC2LI1Q8TCX1 351 aa16.66■□□□□ 0.26
CLN3-215ENST00000565236 GLYATL2Q8WU03 294 aa16.66■□□□□ 0.26
CLN3-215ENST00000565236 GALNT14Q96FL9 552 aa16.66■□□□□ 0.26
CLN3-215ENST00000565236 BCL7BQ9BQE9 202 aa16.66■□□□□ 0.26
CLN3-215ENST00000565236 C6orf62Q9GZU0 229 aaPredicted RBP16.66■□□□□ 0.26
CLN3-215ENST00000565236 CTNNBIP1Q9NSA3 81 aaPredicted RBP16.66■□□□□ 0.26
CLN3-215ENST00000565236 CCDC59Q9P031 241 aaKnown RBP16.66■□□□□ 0.26
CLN3-215ENST00000565236 TP53TG1Q9Y2A0 90 aa16.66■□□□□ 0.26
CLN3-215ENST00000565236 CD5P06127 495 aa16.65■□□□□ 0.26
CLN3-215ENST00000565236 RPL35AP18077 110 aaKnown RBP16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms