RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 CCDC59Q9P031 241 aaKnown RBP11.08□□□□□ -0.64
CLN3-213ENST00000565047 IGHV3OR16-8A0A075B7F1 116 aa11.07□□□□□ -0.64
CLN3-213ENST00000565047 C15orf62A8K5M9 175 aa11.07□□□□□ -0.64
CLN3-213ENST00000565047 MT-CO2P00403 227 aa11.07□□□□□ -0.64
CLN3-213ENST00000565047 PPP5CP53041 499 aa11.07□□□□□ -0.64
CLN3-213ENST00000565047 LHFPL5Q8TAF8 219 aa11.07□□□□□ -0.64
CLN3-213ENST00000565047 ZFAND1Q8TCF1 268 aa11.07□□□□□ -0.64
CLN3-213ENST00000565047 GLYATL2Q8WU03 294 aa11.07□□□□□ -0.64
CLN3-213ENST00000565047 ISOC1Q96CN7 298 aa11.07□□□□□ -0.64
CLN3-213ENST00000565047 SPAG8Q99932 426 aaPredicted RBP11.07□□□□□ -0.64
CLN3-213ENST00000565047 NXF2Q9GZY0 626 aaKnown RBP11.07□□□□□ -0.64
CLN3-213ENST00000565047 EPPK1P58107 5090 aaKnown RBP11.07□□□□□ -0.64
CLN3-213ENST00000565047 RGS5O15539 181 aa11.06□□□□□ -0.64
CLN3-213ENST00000565047 ST8SIA3O43173 380 aa11.06□□□□□ -0.64
CLN3-213ENST00000565047 CDS2O95674 445 aa11.06□□□□□ -0.64
CLN3-213ENST00000565047 IGHV3-48P01763 117 aa11.06□□□□□ -0.64
CLN3-213ENST00000565047 MFAP4P55083 255 aa11.06□□□□□ -0.64
CLN3-213ENST00000565047 BSXQ3C1V8 233 aa11.06□□□□□ -0.64
CLN3-213ENST00000565047 ANKRD55Q3KP44 614 aa11.06□□□□□ -0.64
CLN3-213ENST00000565047 Q56UQ5 140 aa11.06□□□□□ -0.64
CLN3-213ENST00000565047 SPINK9Q5DT21 86 aa11.06□□□□□ -0.64
CLN3-213ENST00000565047 UBAC2Q8NBM4 344 aa11.06□□□□□ -0.64
CLN3-213ENST00000565047 MISP3Q96FF7 219 aa11.06□□□□□ -0.64
CLN3-213ENST00000565047 FAM110AQ9BQ89 295 aa11.06□□□□□ -0.64
CLN3-213ENST00000565047 GAR1Q9NY12 217 aaKnown RBP11.06□□□□□ -0.64
CLN3-213ENST00000565047 SMPXQ9UHP9 88 aa11.06□□□□□ -0.64
CLN3-213ENST00000565047 GPR132Q9UNW8 380 aa11.06□□□□□ -0.64
CLN3-213ENST00000565047 GSTZ1O43708 216 aaPredicted RBP11.05□□□□□ -0.64
CLN3-213ENST00000565047 B3GALNT1O75752 331 aa11.05□□□□□ -0.64
CLN3-213ENST00000565047 ERHP84090 104 aaKnown RBP11.05□□□□□ -0.64
CLN3-213ENST00000565047 MEF2DQ14814 521 aa11.05□□□□□ -0.64
CLN3-213ENST00000565047 SURF2Q15527 256 aaPredicted RBP11.05□□□□□ -0.64
CLN3-213ENST00000565047 ODF3L2Q3SX64 289 aa11.05□□□□□ -0.64
CLN3-213ENST00000565047 SCGB2B2Q4G0G5 96 aa11.05□□□□□ -0.64
CLN3-213ENST00000565047 FAM90A2PQ658T7 463 aa11.05□□□□□ -0.64
CLN3-213ENST00000565047 ZFAND6Q6FIF0 208 aa11.05□□□□□ -0.64
CLN3-213ENST00000565047 RBPMS2Q6ZRY4 209 aaKnown RBP11.05□□□□□ -0.64
CLN3-213ENST00000565047 OR4C16Q8NGL9 310 aa11.05□□□□□ -0.64
CLN3-213ENST00000565047 OVOL2Q9BRP0 275 aa11.05□□□□□ -0.64
CLN3-213ENST00000565047 TMEM222Q9H0R3 208 aa11.05□□□□□ -0.64
CLN3-213ENST00000565047 COPZ2Q9P299 210 aa11.05□□□□□ -0.64
CLN3-213ENST00000565047 IGHV7-4-1A0A0J9YVY3 117 aa11.04□□□□□ -0.64
CLN3-213ENST00000565047 TEX13DA0A0J9YY54 714 aaPredicted RBP11.04□□□□□ -0.64
CLN3-213ENST00000565047 ANKRD20A5PA0PJZ0 165 aa11.04□□□□□ -0.64
CLN3-213ENST00000565047 H3BMQ9 156 aa11.04□□□□□ -0.64
CLN3-213ENST00000565047 CHEK1O14757 476 aa11.04□□□□□ -0.64
CLN3-213ENST00000565047 NUPL2O15504 423 aaKnown RBP11.04□□□□□ -0.64
CLN3-213ENST00000565047 ZNF207O43670 478 aaKnown RBP11.04□□□□□ -0.64
CLN3-213ENST00000565047 OR5AC1P0C628 307 aa11.04□□□□□ -0.64
CLN3-213ENST00000565047 RNASE2P10153 161 aaKnown RBP11.04□□□□□ -0.64
CLN3-213ENST00000565047 ETV6P41212 452 aa11.04□□□□□ -0.64
CLN3-213ENST00000565047 RPL5P46777 297 aaKnown RBP11.04□□□□□ -0.64
CLN3-213ENST00000565047 CCDC71LQ8N9Z2 235 aa11.04□□□□□ -0.64
CLN3-213ENST00000565047 DIRAS2Q96HU8 199 aa11.04□□□□□ -0.64
CLN3-213ENST00000565047 RNF2Q99496 336 aa11.04□□□□□ -0.64
CLN3-213ENST00000565047 C20orf24Q9BUV8 137 aa11.04□□□□□ -0.64
CLN3-213ENST00000565047 MRPL36Q9P0J6 103 aaKnown RBP11.04□□□□□ -0.64
CLN3-213ENST00000565047 LOC102724200A0A096LPH7 203 aaPredicted RBP11.03□□□□□ -0.64
CLN3-213ENST00000565047 AKR1C2P52895 323 aa11.03□□□□□ -0.64
CLN3-213ENST00000565047 RELQ04864 619 aaPredicted RBP11.03□□□□□ -0.64
CLN3-213ENST00000565047 TRIM16LQ309B1 348 aa11.03□□□□□ -0.64
CLN3-213ENST00000565047 SELENOHQ8IZQ5 122 aaKnown RBP11.03□□□□□ -0.64
CLN3-213ENST00000565047 LILRB2Q8N423 598 aa11.03□□□□□ -0.64
CLN3-213ENST00000565047 OR52E5Q8NH55 327 aa11.03□□□□□ -0.64
CLN3-213ENST00000565047 TMEM230Q96A57 120 aa11.03□□□□□ -0.64
CLN3-213ENST00000565047 RHPN1-AS1Q9BWJ2 59 aa11.03□□□□□ -0.64
CLN3-213ENST00000565047 GGTLC1Q9BX51 225 aa11.03□□□□□ -0.64
CLN3-213ENST00000565047 FNDC4Q9H6D8 234 aaPredicted RBP11.03□□□□□ -0.64
CLN3-213ENST00000565047 NAA60Q9H7X0 242 aa11.03□□□□□ -0.64
CLN3-213ENST00000565047 ZFAND3Q9H8U3 227 aa11.03□□□□□ -0.64
CLN3-213ENST00000565047 RABL2AQ9UBK7 228 aaPredicted RBP11.03□□□□□ -0.64
CLN3-213ENST00000565047 RABL2BQ9UNT1 228 aa11.03□□□□□ -0.64
CLN3-213ENST00000565047 ALMS1Q8TCU4 4167 aa11.03□□□□□ -0.64
CLN3-213ENST00000565047 LCE6AA0A183 80 aa11.02□□□□□ -0.65
CLN3-213ENST00000565047 CRYM-AS1A6NIL9 109 aa11.02□□□□□ -0.65
CLN3-213ENST00000565047 ATG12O94817 140 aa11.02□□□□□ -0.65
CLN3-213ENST00000565047 TMEM50AO95807 157 aa11.02□□□□□ -0.65
CLN3-213ENST00000565047 AKAIN1P0CW23 69 aa11.02□□□□□ -0.65
CLN3-213ENST00000565047 TNFSF8P32971 234 aa11.02□□□□□ -0.65
CLN3-213ENST00000565047 IL18Q14116 193 aa11.02□□□□□ -0.65
CLN3-213ENST00000565047 MLANAQ16655 118 aa11.02□□□□□ -0.65
CLN3-213ENST00000565047 TOMM20LQ6UXN7 152 aa11.02□□□□□ -0.65
CLN3-213ENST00000565047 FAM219AQ8IW50 185 aa11.02□□□□□ -0.65
CLN3-213ENST00000565047 PINX1Q96BK5 328 aaKnown RBP11.02□□□□□ -0.65
CLN3-213ENST00000565047 UBQLN2Q9UHD9 624 aa11.02□□□□□ -0.65
CLN3-213ENST00000565047 TMEM56-RWDD3S4R434 201 aa11.02□□□□□ -0.65
CLN3-213ENST00000565047 DISC1C4P0D8 188 aa11.01□□□□□ -0.65
CLN3-213ENST00000565047 GNG7O60262 68 aa11.01□□□□□ -0.65
CLN3-213ENST00000565047 IFNA17P01571 189 aa11.01□□□□□ -0.65
CLN3-213ENST00000565047 APOHP02749 345 aaPredicted RBP11.01□□□□□ -0.65
CLN3-213ENST00000565047 LAMTOR1Q6IAA8 161 aa11.01□□□□□ -0.65
CLN3-213ENST00000565047 SLC35G3Q8N808 338 aa11.01□□□□□ -0.65
CLN3-213ENST00000565047 TMEM116Q8NCL8 245 aa11.01□□□□□ -0.65
CLN3-213ENST00000565047 OR51S1Q8NGJ8 323 aa11.01□□□□□ -0.65
CLN3-213ENST00000565047 TMEM170AQ8WVE7 144 aa11.01□□□□□ -0.65
CLN3-213ENST00000565047 RBPMSQ93062 196 aaKnown RBP11.01□□□□□ -0.65
CLN3-213ENST00000565047 GPR146Q96CH1 333 aa11.01□□□□□ -0.65
CLN3-213ENST00000565047 GALNT14Q96FL9 552 aa11.01□□□□□ -0.65
CLN3-213ENST00000565047 VSIRQ9H7M9 311 aa11.01□□□□□ -0.65
CLN3-213ENST00000565047 TRAV14DV4A0A0A6YYC5 116 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms