RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 IGHV3OR16-8A0A075B7F1 116 aa12.73□□□□□ -0.37
VPS9D1-203ENST00000563798 A0A0B4J293 547 aa12.73□□□□□ -0.37
VPS9D1-203ENST00000563798 ZNF207O43670 478 aaKnown RBP12.73□□□□□ -0.37
VPS9D1-203ENST00000563798 IGKV1-5P01602 117 aa12.73□□□□□ -0.37
VPS9D1-203ENST00000563798 CD74P04233 296 aa12.73□□□□□ -0.37
VPS9D1-203ENST00000563798 STPG3Q8N7X2 389 aa12.73□□□□□ -0.37
VPS9D1-203ENST00000563798 OR52I2Q8NH67 350 aa12.73□□□□□ -0.37
VPS9D1-203ENST00000563798 TP53RKQ96S44 253 aa12.73□□□□□ -0.37
VPS9D1-203ENST00000563798 MAP6D1Q9H9H5 199 aa12.73□□□□□ -0.37
VPS9D1-203ENST00000563798 TRAV14DV4A0A0A6YYC5 116 aa12.72□□□□□ -0.37
VPS9D1-203ENST00000563798 FAM25AB3EWG3 89 aa12.72□□□□□ -0.37
VPS9D1-203ENST00000563798 FAM25CB3EWG5 89 aa12.72□□□□□ -0.37
VPS9D1-203ENST00000563798 FAM25GB3EWG6 89 aa12.72□□□□□ -0.37
VPS9D1-203ENST00000563798 ATG12O94817 140 aa12.72□□□□□ -0.37
VPS9D1-203ENST00000563798 CD3DP04234 171 aa12.72□□□□□ -0.37
VPS9D1-203ENST00000563798 CD5P06127 495 aa12.72□□□□□ -0.37
VPS9D1-203ENST00000563798 PIGPP57054 158 aa12.72□□□□□ -0.37
VPS9D1-203ENST00000563798 LYG2Q86SG7 212 aa12.72□□□□□ -0.37
VPS9D1-203ENST00000563798 TERB2Q8NHR7 220 aa12.72□□□□□ -0.37
VPS9D1-203ENST00000563798 ABHD1Q96SE0 405 aa12.72□□□□□ -0.37
VPS9D1-203ENST00000563798 NAA50Q9GZZ1 169 aaKnown RBP12.72□□□□□ -0.37
VPS9D1-203ENST00000563798 A0A0J9YWU9 116 aa12.71□□□□□ -0.37
VPS9D1-203ENST00000563798 C3orf85A0A1B0GTC6 90 aa12.71□□□□□ -0.37
VPS9D1-203ENST00000563798 GNG7O60262 68 aa12.71□□□□□ -0.37
VPS9D1-203ENST00000563798 B3GALNT1O75752 331 aa12.71□□□□□ -0.37
VPS9D1-203ENST00000563798 YIF1AO95070 293 aa12.71□□□□□ -0.37
VPS9D1-203ENST00000563798 SMIM18P0DKX4 95 aa12.71□□□□□ -0.37
VPS9D1-203ENST00000563798 PGAM2P15259 253 aa12.71□□□□□ -0.37
VPS9D1-203ENST00000563798 PI3P19957 117 aa12.71□□□□□ -0.37
VPS9D1-203ENST00000563798 NPBWR1P48145 328 aa12.71□□□□□ -0.37
VPS9D1-203ENST00000563798 IZUMO4Q1ZYL8 232 aa12.71□□□□□ -0.37
VPS9D1-203ENST00000563798 DEFB135Q30KP9 77 aa12.71□□□□□ -0.37
VPS9D1-203ENST00000563798 TMEM229BQ8NBD8 167 aa12.71□□□□□ -0.37
VPS9D1-203ENST00000563798 VSIRQ9H7M9 311 aa12.71□□□□□ -0.37
VPS9D1-203ENST00000563798 EXTL2Q9UBQ6 330 aa12.71□□□□□ -0.37
VPS9D1-203ENST00000563798 ALMS1Q8TCU4 4167 aa12.71□□□□□ -0.38
VPS9D1-203ENST00000563798 UCP1P25874 307 aa12.7□□□□□ -0.38
VPS9D1-203ENST00000563798 EWSR1Q01844 656 aaKnown RBP eCLIP12.7□□□□□ -0.38
VPS9D1-203ENST00000563798 AARDQ4LEZ3 155 aa12.7□□□□□ -0.38
VPS9D1-203ENST00000563798 TOMM20LQ6UXN7 152 aa12.7□□□□□ -0.38
VPS9D1-203ENST00000563798 DUSP18Q8NEJ0 188 aa12.7□□□□□ -0.38
VPS9D1-203ENST00000563798 ZFAND1Q8TCF1 268 aa12.7□□□□□ -0.38
VPS9D1-203ENST00000563798 PINX1Q96BK5 328 aaKnown RBP12.7□□□□□ -0.38
VPS9D1-203ENST00000563798 GINS3Q9BRX5 216 aa12.7□□□□□ -0.38
VPS9D1-203ENST00000563798 C6orf62Q9GZU0 229 aaPredicted RBP12.7□□□□□ -0.38
VPS9D1-203ENST00000563798 NUPR2A6NF83 97 aa12.69□□□□□ -0.38
VPS9D1-203ENST00000563798 CORTO00230 105 aa12.69□□□□□ -0.38
VPS9D1-203ENST00000563798 ST8SIA3O43173 380 aa12.69□□□□□ -0.38
VPS9D1-203ENST00000563798 TMEM50AO95807 157 aa12.69□□□□□ -0.38
VPS9D1-203ENST00000563798 IGHV3-48P01763 117 aa12.69□□□□□ -0.38
VPS9D1-203ENST00000563798 SNCAP37840 140 aa12.69□□□□□ -0.38
VPS9D1-203ENST00000563798 AKR1C2P52895 323 aa12.69□□□□□ -0.38
VPS9D1-203ENST00000563798 SSBP1Q04837 148 aaKnown RBP12.69□□□□□ -0.38
VPS9D1-203ENST00000563798 GPR107Q5VW38 600 aa12.69□□□□□ -0.38
VPS9D1-203ENST00000563798 SLC35G3Q8N808 338 aa12.69□□□□□ -0.38
VPS9D1-203ENST00000563798 CCDC71LQ8N9Z2 235 aa12.69□□□□□ -0.38
VPS9D1-203ENST00000563798 OR4D10Q8NGI6 311 aa12.69□□□□□ -0.38
VPS9D1-203ENST00000563798 ZFAND3Q9H8U3 227 aa12.69□□□□□ -0.38
VPS9D1-203ENST00000563798 TRAV2A0A0B4J234 112 aa12.68□□□□□ -0.38
VPS9D1-203ENST00000563798 RNASE2P10153 161 aaKnown RBP12.68□□□□□ -0.38
VPS9D1-203ENST00000563798 RPL35AP18077 110 aaKnown RBP12.68□□□□□ -0.38
VPS9D1-203ENST00000563798 RPL5P46777 297 aaKnown RBP12.68□□□□□ -0.38
VPS9D1-203ENST00000563798 SUB1P53999 127 aaKnown RBP eCLIP12.68□□□□□ -0.38
VPS9D1-203ENST00000563798 TAS2R19P59542 299 aa12.68□□□□□ -0.38
VPS9D1-203ENST00000563798 MRPS10P82664 201 aaKnown RBP12.68□□□□□ -0.38
VPS9D1-203ENST00000563798 BSXQ3C1V8 233 aa12.68□□□□□ -0.38
VPS9D1-203ENST00000563798 RNASE12Q5GAN4 147 aaKnown RBP12.68□□□□□ -0.38
VPS9D1-203ENST00000563798 ZNF600Q6ZNG1 722 aa12.68□□□□□ -0.38
VPS9D1-203ENST00000563798 APRG1Q8IVJ8 170 aa12.68□□□□□ -0.38
VPS9D1-203ENST00000563798 OR13C8Q8NGS7 320 aa12.68□□□□□ -0.38
VPS9D1-203ENST00000563798 LINC00476Q8WZB0 136 aa12.68□□□□□ -0.38
VPS9D1-203ENST00000563798 CSTL1Q9H114 145 aa12.68□□□□□ -0.38
VPS9D1-203ENST00000563798 MIXL1Q9H2W2 232 aa12.68□□□□□ -0.38
VPS9D1-203ENST00000563798 COPZ2Q9P299 210 aa12.68□□□□□ -0.38
VPS9D1-203ENST00000563798 IGHV3-49A0A0A0MS15 119 aa12.67□□□□□ -0.38
VPS9D1-203ENST00000563798 GABARAPH6UMI1 98 aa12.67□□□□□ -0.38
VPS9D1-203ENST00000563798 CDS2O95674 445 aa12.67□□□□□ -0.38
VPS9D1-203ENST00000563798 RAB3DO95716 219 aa12.67□□□□□ -0.38
VPS9D1-203ENST00000563798 IFNA17P01571 189 aa12.67□□□□□ -0.38
VPS9D1-203ENST00000563798 PAFAH1B2P68402 229 aa12.67□□□□□ -0.38
VPS9D1-203ENST00000563798 SPINK9Q5DT21 86 aa12.67□□□□□ -0.38
VPS9D1-203ENST00000563798 STEAP1BQ6NZ63 245 aa12.67□□□□□ -0.38
VPS9D1-203ENST00000563798 CEMP1Q6PRD7 247 aaPredicted RBP12.67□□□□□ -0.38
VPS9D1-203ENST00000563798 TCF24Q7RTU0 167 aa12.67□□□□□ -0.38
VPS9D1-203ENST00000563798 FAM219AQ8IW50 185 aa12.67□□□□□ -0.38
VPS9D1-203ENST00000563798 TMEM217Q8N7C4 229 aa12.67□□□□□ -0.38
VPS9D1-203ENST00000563798 GATAD1Q8WUU5 269 aa12.67□□□□□ -0.38
VPS9D1-203ENST00000563798 PDCD10Q9BUL8 212 aa12.67□□□□□ -0.38
VPS9D1-203ENST00000563798 A0A0G2JRQ6 117 aa12.66□□□□□ -0.38
VPS9D1-203ENST00000563798 CXorf65A6NEN9 183 aa12.66□□□□□ -0.38
VPS9D1-203ENST00000563798 MPTX1A8MV57 137 aa12.66□□□□□ -0.38
VPS9D1-203ENST00000563798 DFFBO76075 338 aa12.66□□□□□ -0.38
VPS9D1-203ENST00000563798 ETV6P41212 452 aa12.66□□□□□ -0.38
VPS9D1-203ENST00000563798 PPP5CP53041 499 aa12.66□□□□□ -0.38
VPS9D1-203ENST00000563798 SURF2Q15527 256 aaPredicted RBP12.66□□□□□ -0.38
VPS9D1-203ENST00000563798 TRIM16LQ309B1 348 aa12.66□□□□□ -0.38
VPS9D1-203ENST00000563798 SP6Q3SY56 376 aa12.66□□□□□ -0.38
VPS9D1-203ENST00000563798 LILRB2Q8N423 598 aa12.66□□□□□ -0.38
VPS9D1-203ENST00000563798 OR52E5Q8NH55 327 aa12.66□□□□□ -0.38
VPS9D1-203ENST00000563798 MARCH1Q8TCQ1 289 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms