RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 GALNT14Q96FL9 552 aa7.52□□□□□ -1.2
VPS39-205ENST00000562258 RNF24Q9Y225 148 aa7.52□□□□□ -1.2
VPS39-205ENST00000562258 ARHGAP21Q5T5U3 1957 aa7.52□□□□□ -1.21
VPS39-205ENST00000562258 A0A1W2PS18 150 aa7.52□□□□□ -1.21
VPS39-205ENST00000562258 G3V318 75 aa7.52□□□□□ -1.21
VPS39-205ENST00000562258 IGHV2-70P01814 119 aa7.52□□□□□ -1.21
VPS39-205ENST00000562258 GATA3P23771 443 aa7.52□□□□□ -1.21
VPS39-205ENST00000562258 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.52□□□□□ -1.21
VPS39-205ENST00000562258 GUSBP1Q15486 140 aa7.52□□□□□ -1.21
VPS39-205ENST00000562258 C12orf54Q6X4T0 127 aa7.52□□□□□ -1.21
VPS39-205ENST00000562258 SIGLECL1Q8N7X8 197 aa7.52□□□□□ -1.21
VPS39-205ENST00000562258 C18orf12Q96KH6 178 aa7.52□□□□□ -1.21
VPS39-205ENST00000562258 ITPR3Q14573 2671 aa7.52□□□□□ -1.21
VPS39-205ENST00000562258 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP7.52□□□□□ -1.21
VPS39-205ENST00000562258 PAGE4O60829 102 aa7.52□□□□□ -1.21
VPS39-205ENST00000562258 DEDDO75618 318 aa7.52□□□□□ -1.21
VPS39-205ENST00000562258 LMO1P25800 156 aa7.52□□□□□ -1.21
VPS39-205ENST00000562258 C15orf32Q32M92 178 aa7.52□□□□□ -1.21
VPS39-205ENST00000562258 ASCL4Q6XD76 172 aa7.52□□□□□ -1.21
VPS39-205ENST00000562258 ZNF738Q8NE65 137 aa7.52□□□□□ -1.21
VPS39-205ENST00000562258 F5H697 171 aa7.51□□□□□ -1.21
VPS39-205ENST00000562258 RPS10P46783 165 aaKnown RBP7.51□□□□□ -1.21
VPS39-205ENST00000562258 SELENOTP62341 195 aa7.51□□□□□ -1.21
VPS39-205ENST00000562258 TEX36Q5VZQ5 186 aa7.51□□□□□ -1.21
VPS39-205ENST00000562258 KLHL30-AS1Q8NEE0 82 aa7.51□□□□□ -1.21
VPS39-205ENST00000562258 PAXXQ9BUH6 204 aa7.51□□□□□ -1.21
VPS39-205ENST00000562258 IFI27L2Q9H2X8 130 aa7.51□□□□□ -1.21
VPS39-205ENST00000562258 GSX1Q9H4S2 264 aaPredicted RBP7.51□□□□□ -1.21
VPS39-205ENST00000562258 H0YJW9 148 aa7.51□□□□□ -1.21
VPS39-205ENST00000562258 H7BYZ3 331 aa7.51□□□□□ -1.21
VPS39-205ENST00000562258 ZNF735P0CB33 412 aa7.51□□□□□ -1.21
VPS39-205ENST00000562258 ZNF134P52741 427 aa7.51□□□□□ -1.21
VPS39-205ENST00000562258 ERVFC1-1P60608 527 aa7.51□□□□□ -1.21
VPS39-205ENST00000562258 PRSS8Q16651 343 aa7.51□□□□□ -1.21
VPS39-205ENST00000562258 LGALSLQ3ZCW2 172 aaPredicted RBP7.51□□□□□ -1.21
VPS39-205ENST00000562258 DEFB121Q5J5C9 76 aa7.51□□□□□ -1.21
VPS39-205ENST00000562258 HSD17B13Q7Z5P4 300 aaPredicted RBP7.51□□□□□ -1.21
VPS39-205ENST00000562258 DTX2Q86UW9 622 aa7.51□□□□□ -1.21
VPS39-205ENST00000562258 TAF15Q92804 592 aaKnown RBP eCLIP7.51□□□□□ -1.21
VPS39-205ENST00000562258 CDC42EP3Q9UKI2 254 aa7.51□□□□□ -1.21
VPS39-205ENST00000562258 ORM1P02763 201 aa7.51□□□□□ -1.21
VPS39-205ENST00000562258 IGFBP2P18065 325 aa7.51□□□□□ -1.21
VPS39-205ENST00000562258 ZFP36P26651 326 aaKnown RBP7.51□□□□□ -1.21
VPS39-205ENST00000562258 RAB5CP51148 216 aa7.51□□□□□ -1.21
VPS39-205ENST00000562258 PAX5Q02548 391 aa7.51□□□□□ -1.21
VPS39-205ENST00000562258 C17orf58Q2M2W7 97 aa7.51□□□□□ -1.21
VPS39-205ENST00000562258 EBLN2Q6P2I7 272 aa7.51□□□□□ -1.21
VPS39-205ENST00000562258 BIVMQ86UB2 503 aa7.51□□□□□ -1.21
VPS39-205ENST00000562258 BPIFA4PQ86YQ2 179 aa7.51□□□□□ -1.21
VPS39-205ENST00000562258 OR51G1Q8NGK1 321 aa7.51□□□□□ -1.21
VPS39-205ENST00000562258 SPEGQ15772 3267 aa7.51□□□□□ -1.21
VPS39-205ENST00000562258 FRYQ5TBA9 3013 aa7.5□□□□□ -1.21
VPS39-205ENST00000562258 SIAH2O43255 324 aa7.5□□□□□ -1.21
VPS39-205ENST00000562258 VENTXO95231 258 aa7.5□□□□□ -1.21
VPS39-205ENST00000562258 OR2C1O95371 312 aa7.5□□□□□ -1.21
VPS39-205ENST00000562258 COMPP49747 757 aaPredicted RBP7.5□□□□□ -1.21
VPS39-205ENST00000562258 GUK1Q16774 197 aa7.5□□□□□ -1.21
VPS39-205ENST00000562258 LEMD1Q68G75 181 aa7.5□□□□□ -1.21
VPS39-205ENST00000562258 ASB13Q8WXK3 278 aa7.5□□□□□ -1.21
VPS39-205ENST00000562258 IL22RA2Q969J5 263 aa7.5□□□□□ -1.21
VPS39-205ENST00000562258 CXorf58Q96LI9 332 aa7.5□□□□□ -1.21
VPS39-205ENST00000562258 DNAJC4Q9NNZ3 241 aa7.5□□□□□ -1.21
VPS39-205ENST00000562258 MBNL3Q9NUK0 354 aaKnown RBP7.5□□□□□ -1.21
VPS39-205ENST00000562258 MT-ND4LP03901 98 aa7.5□□□□□ -1.21
VPS39-205ENST00000562258 AREGP15514 252 aa7.5□□□□□ -1.21
VPS39-205ENST00000562258 BSCL2Q96G97 398 aaPredicted RBP7.5□□□□□ -1.21
VPS39-205ENST00000562258 FAM90A26D6RGX4 464 aa7.5□□□□□ -1.21
VPS39-205ENST00000562258 FCN1O00602 326 aa7.5□□□□□ -1.21
VPS39-205ENST00000562258 CLN5O75503 358 aa7.5□□□□□ -1.21
VPS39-205ENST00000562258 PIP4P2Q8N4L2 257 aa7.5□□□□□ -1.21
VPS39-205ENST00000562258 TEX45Q8NA69 505 aa7.5□□□□□ -1.21
VPS39-205ENST00000562258 LHFPL5Q8TAF8 219 aa7.5□□□□□ -1.21
VPS39-205ENST00000562258 FAM110DQ8TAY7 271 aaPredicted RBP7.5□□□□□ -1.21
VPS39-205ENST00000562258 JKAMPQ9P055 326 aa7.5□□□□□ -1.21
VPS39-205ENST00000562258 SIGLEC9Q9Y336 463 aa7.5□□□□□ -1.21
VPS39-205ENST00000562258 PGPA6NDG6 321 aa7.49□□□□□ -1.21
VPS39-205ENST00000562258 HMSDA8MTL9 139 aa7.49□□□□□ -1.21
VPS39-205ENST00000562258 ID1P41134 155 aa7.49□□□□□ -1.21
VPS39-205ENST00000562258 DLX6P56179 175 aa7.49□□□□□ -1.21
VPS39-205ENST00000562258 RELQ04864 619 aaPredicted RBP7.49□□□□□ -1.21
VPS39-205ENST00000562258 MLANAQ16655 118 aa7.49□□□□□ -1.21
VPS39-205ENST00000562258 LYRM2Q9NU23 88 aaPredicted RBP7.49□□□□□ -1.21
VPS39-205ENST00000562258 TMEM56-RWDD3S4R434 201 aa7.49□□□□□ -1.21
VPS39-205ENST00000562258 DMXL2Q8TDJ6 3036 aa7.49□□□□□ -1.21
VPS39-205ENST00000562258 TEX50A0A1B0GTY4 177 aa7.49□□□□□ -1.21
VPS39-205ENST00000562258 C15orf61A6NNL5 157 aa7.49□□□□□ -1.21
VPS39-205ENST00000562258 IGLV3-1P01715 115 aa7.49□□□□□ -1.21
VPS39-205ENST00000562258 TMEM95Q3KNT9 176 aa7.49□□□□□ -1.21
VPS39-205ENST00000562258 TEX261Q6UWH6 196 aa7.49□□□□□ -1.21
VPS39-205ENST00000562258 ELOVL1Q9BW60 279 aa7.49□□□□□ -1.21
VPS39-205ENST00000562258 TOLLIPQ9H0E2 274 aa7.49□□□□□ -1.21
VPS39-205ENST00000562258 TNFSF18Q9UNG2 199 aa7.49□□□□□ -1.21
VPS39-205ENST00000562258 FLNAP21333 2647 aaKnown RBP7.49□□□□□ -1.21
VPS39-205ENST00000562258 DBX1A6NMT0 343 aa7.49□□□□□ -1.21
VPS39-205ENST00000562258 FHITP49789 147 aa7.49□□□□□ -1.21
VPS39-205ENST00000562258 RND3P61587 244 aa7.49□□□□□ -1.21
VPS39-205ENST00000562258 ZNF90Q03938 601 aa7.49□□□□□ -1.21
VPS39-205ENST00000562258 FAM120AOSQ5T036 256 aa7.49□□□□□ -1.21
VPS39-205ENST00000562258 WFDC12Q8WWY7 111 aa7.49□□□□□ -1.21
VPS39-205ENST00000562258 TBL2Q9Y4P3 447 aaKnown RBP7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 101.4 ms