RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 GUCA2BQ16661 112 aa6.12□□□□□ -1.43
CCDC88C-214ENST00000557507 DEFB114Q30KQ6 69 aa6.12□□□□□ -1.43
CCDC88C-214ENST00000557507 IGSF11Q5DX21 431 aa6.12□□□□□ -1.43
CCDC88C-214ENST00000557507 CEMP1Q6PRD7 247 aaPredicted RBP6.12□□□□□ -1.43
CCDC88C-214ENST00000557507 ACOT7LQ6ZUV0 252 aa6.12□□□□□ -1.43
CCDC88C-214ENST00000557507 H1FOOQ8IZA3 346 aaPredicted RBP6.12□□□□□ -1.43
CCDC88C-214ENST00000557507 DYNLRB2Q8TF09 96 aa6.12□□□□□ -1.43
CCDC88C-214ENST00000557507 PPP1R1CQ8WVI7 109 aa6.12□□□□□ -1.43
CCDC88C-214ENST00000557507 TMEM230Q96A57 120 aa6.12□□□□□ -1.43
CCDC88C-214ENST00000557507 MRGPRFQ96AM1 343 aa6.12□□□□□ -1.43
CCDC88C-214ENST00000557507 WDR89Q96FK6 387 aaPredicted RBP6.12□□□□□ -1.43
CCDC88C-214ENST00000557507 TSNAXQ99598 290 aaKnown RBP6.12□□□□□ -1.43
CCDC88C-214ENST00000557507 COA4Q9NYJ1 87 aa6.12□□□□□ -1.43
CCDC88C-214ENST00000557507 FAT2Q9NYQ8 4349 aa6.12□□□□□ -1.43
CCDC88C-214ENST00000557507 OR1A1Q9P1Q5 309 aa6.12□□□□□ -1.43
CCDC88C-214ENST00000557507 PEMTQ9UBM1 199 aa6.12□□□□□ -1.43
CCDC88C-214ENST00000557507 UBQLN2Q9UHD9 624 aa6.12□□□□□ -1.43
CCDC88C-214ENST00000557507 IGKV1D-8A0A087WSZ0 117 aa6.11□□□□□ -1.43
CCDC88C-214ENST00000557507 C2orf70A6NJV1 201 aa6.11□□□□□ -1.43
CCDC88C-214ENST00000557507 TAAR5O14804 337 aa6.11□□□□□ -1.43
CCDC88C-214ENST00000557507 SIX6O95475 246 aa6.11□□□□□ -1.43
CCDC88C-214ENST00000557507 MPC2O95563 127 aa6.11□□□□□ -1.43
CCDC88C-214ENST00000557507 CRYGBP07316 175 aa6.11□□□□□ -1.43
CCDC88C-214ENST00000557507 PI3P19957 117 aa6.11□□□□□ -1.43
CCDC88C-214ENST00000557507 GNRHRP30968 328 aa6.11□□□□□ -1.43
CCDC88C-214ENST00000557507 CEACAM6P40199 344 aa6.11□□□□□ -1.43
CCDC88C-214ENST00000557507 EXOSC2Q13868 293 aaKnown RBP6.11□□□□□ -1.43
CCDC88C-214ENST00000557507 OPCMLQ14982 345 aa6.11□□□□□ -1.43
CCDC88C-214ENST00000557507 MRGPRG-AS1Q2M3A8 158 aa6.11□□□□□ -1.43
CCDC88C-214ENST00000557507 IAH1Q2TAA2 248 aaPredicted RBP6.11□□□□□ -1.43
CCDC88C-214ENST00000557507 PHLDA2Q53GA4 152 aa6.11□□□□□ -1.43
CCDC88C-214ENST00000557507 PRSS54Q6PEW0 395 aa6.11□□□□□ -1.43
CCDC88C-214ENST00000557507 SLC51BQ86UW2 128 aa6.11□□□□□ -1.43
CCDC88C-214ENST00000557507 PDPNQ86YL7 162 aa6.11□□□□□ -1.43
CCDC88C-214ENST00000557507 RNASE11Q8TAA1 199 aaKnown RBP6.11□□□□□ -1.43
CCDC88C-214ENST00000557507 LRRC20Q8TCA0 184 aa6.11□□□□□ -1.43
CCDC88C-214ENST00000557507 CD300LFQ8TDQ1 290 aa6.11□□□□□ -1.43
CCDC88C-214ENST00000557507 CACNG8Q8WXS5 425 aa6.11□□□□□ -1.43
CCDC88C-214ENST00000557507 USMG5Q96IX5 58 aa6.11□□□□□ -1.43
CCDC88C-214ENST00000557507 GGTLC1Q9BX51 225 aa6.11□□□□□ -1.43
CCDC88C-214ENST00000557507 ARL6Q9H0F7 186 aa6.11□□□□□ -1.43
CCDC88C-214ENST00000557507 TMEM222Q9H0R3 208 aa6.11□□□□□ -1.43
CCDC88C-214ENST00000557507 PLEKHA2Q9HB19 425 aa6.11□□□□□ -1.43
CCDC88C-214ENST00000557507 FAM212BQ9NTI7 297 aaPredicted RBP6.11□□□□□ -1.43
CCDC88C-214ENST00000557507 GSKIPQ9P0R6 139 aa6.11□□□□□ -1.43
CCDC88C-214ENST00000557507 DNAH2Q9P225 4427 aa6.1□□□□□ -1.43
CCDC88C-214ENST00000557507 MSGN1A6NI15 193 aa6.1□□□□□ -1.43
CCDC88C-214ENST00000557507 E5RGE8 158 aa6.1□□□□□ -1.43
CCDC88C-214ENST00000557507 PPP5D1E7EU14 171 aa6.1□□□□□ -1.43
CCDC88C-214ENST00000557507 ITGB1BP1O14713 200 aa6.1□□□□□ -1.43
CCDC88C-214ENST00000557507 ST8SIA3O43173 380 aa6.1□□□□□ -1.43
CCDC88C-214ENST00000557507 SCAF4O95104 1147 aaKnown RBP6.1□□□□□ -1.43
CCDC88C-214ENST00000557507 APOA2P02652 100 aa6.1□□□□□ -1.43
CCDC88C-214ENST00000557507 PRH1P02810 166 aa6.1□□□□□ -1.43
CCDC88C-214ENST00000557507 HOXB5P09067 269 aa6.1□□□□□ -1.43
CCDC88C-214ENST00000557507 OR5AC1P0C628 307 aa6.1□□□□□ -1.43
CCDC88C-214ENST00000557507 F2RP25116 425 aa6.1□□□□□ -1.43
CCDC88C-214ENST00000557507 KIR2DS2P43631 304 aa6.1□□□□□ -1.43
CCDC88C-214ENST00000557507 LGALS7P47929 136 aa6.1□□□□□ -1.43
CCDC88C-214ENST00000557507 SUPT4H1P63272 117 aaKnown RBP6.1□□□□□ -1.43
CCDC88C-214ENST00000557507 RHOGP84095 191 aa6.1□□□□□ -1.43
CCDC88C-214ENST00000557507 TNFRSF9Q07011 255 aa6.1□□□□□ -1.43
CCDC88C-214ENST00000557507 TMEM187Q14656 261 aa6.1□□□□□ -1.43
CCDC88C-214ENST00000557507 ANKRD55Q3KP44 614 aa6.1□□□□□ -1.43
CCDC88C-214ENST00000557507 LGALSLQ3ZCW2 172 aaPredicted RBP6.1□□□□□ -1.43
CCDC88C-214ENST00000557507 TEX261Q6UWH6 196 aa6.1□□□□□ -1.43
CCDC88C-214ENST00000557507 TMUB2Q71RG4 321 aa6.1□□□□□ -1.43
CCDC88C-214ENST00000557507 TBC1D26Q86UD7 250 aa6.1□□□□□ -1.43
CCDC88C-214ENST00000557507 TMEM61Q8N0U2 210 aa6.1□□□□□ -1.43
CCDC88C-214ENST00000557507 KCNRGQ8N5I3 272 aa6.1□□□□□ -1.43
CCDC88C-214ENST00000557507 ZNF645Q8N7E2 425 aa6.1□□□□□ -1.43
CCDC88C-214ENST00000557507 RBPMSQ93062 196 aaKnown RBP6.1□□□□□ -1.43
CCDC88C-214ENST00000557507 RRNAD1Q96FB5 475 aaKnown RBP6.1□□□□□ -1.43
CCDC88C-214ENST00000557507 PHYHIPLQ96FC7 376 aa6.1□□□□□ -1.43
CCDC88C-214ENST00000557507 SEC22AQ96IW7 307 aa6.1□□□□□ -1.43
CCDC88C-214ENST00000557507 TMEM68Q96MH6 324 aa6.1□□□□□ -1.43
CCDC88C-214ENST00000557507 TMEM56Q96MV1 263 aa6.1□□□□□ -1.43
CCDC88C-214ENST00000557507 ARPC5LQ9BPX5 153 aa6.1□□□□□ -1.43
CCDC88C-214ENST00000557507 RDH8Q9NYR8 311 aa6.1□□□□□ -1.43
CCDC88C-214ENST00000557507 PLA2G2EQ9NZK7 142 aa6.1□□□□□ -1.43
CCDC88C-214ENST00000557507 NSG2Q9Y328 171 aa6.1□□□□□ -1.43
CCDC88C-214ENST00000557507 TMEM56-RWDD3S4R434 201 aa6.1□□□□□ -1.43
CCDC88C-214ENST00000557507 U3KQ87 197 aa6.1□□□□□ -1.43
CCDC88C-214ENST00000557507 DYNC1H1Q14204 4646 aaKnown RBP6.1□□□□□ -1.43
CCDC88C-214ENST00000557507 LOC102724200A0A096LPH7 203 aaPredicted RBP6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 K7EPK0 472 aa6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 M0R1X1 148 aa6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 WRBO00258 174 aa6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 CCSO14618 274 aa6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 BCL2L11O43521 198 aa6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 PGLYRP1O75594 196 aaPredicted RBP6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 OR9G9P0C7N8 305 aa6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 SLC25A6P12236 298 aa6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 TPT1P13693 172 aaKnown RBP6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 FOLR2P14207 255 aa6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 UCP1P25874 307 aa6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 S100A10P60903 97 aa6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 VAMP2P63027 116 aa6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 PRR20EP86478 221 aa6.09□□□□□ -1.43
CCDC88C-214ENST00000557507 PRR20CP86479 221 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms