RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 HLA-DRB1P01911 266 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 P04436 131 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 OR5AL1P0C617 328 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 MGST1P10620 155 aaKnown RBP2.35□□□□□ -2.03
SLIRP-208ENST00000556956 SCGB1A1P11684 91 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 IGLL1P15814 213 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 TMEM11P17152 192 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 CRYBB3P26998 211 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 PPOXP50336 477 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 ATP5IP56385 69 aaPredicted RBP2.35□□□□□ -2.03
SLIRP-208ENST00000556956 RPL30P62888 115 aaKnown RBP2.35□□□□□ -2.03
SLIRP-208ENST00000556956 SEC11AP67812 179 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 HIST1H1AQ02539 215 aaPredicted RBP2.35□□□□□ -2.03
SLIRP-208ENST00000556956 PAX2Q02962 417 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 HYAL1Q12794 435 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 PSG7Q13046 419 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 EIF4EBP1Q13541 118 aaPredicted RBP2.35□□□□□ -2.03
SLIRP-208ENST00000556956 EFNB3Q15768 340 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 TNXAQ16473 311 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 KIAA1644Q3SXP7 199 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 ANXA2RQ3ZCQ2 193 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 Q56UQ5 140 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 CENPWQ5EE01 88 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 LDLRAD2Q5SZI1 272 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 BVES-AS1Q5T3Y7 98 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 IBA57Q5T440 356 aaKnown RBP2.35□□□□□ -2.03
SLIRP-208ENST00000556956 PRAMEF5Q5TYX0 476 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 PRAMEF6Q5VXH4 476 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 MIC13Q5XKP0 118 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 AMMECR1LQ6DCA0 310 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 CCDC144NLQ6NUI1 221 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 MRPL54Q6P161 138 aaKnown RBP2.35□□□□□ -2.03
SLIRP-208ENST00000556956 PQLC2Q6ZP29 291 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 FAM231DQ6ZW35 169 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 TCF24Q7RTU0 167 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 ATP5L2Q7Z4Y8 100 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 PIP4P1Q86T03 277 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 DEFB125Q8N687 156 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 Q8N7P7 452 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 ST6GALNAC3Q8NDV1 305 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 TSTD1Q8NFU3 115 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 OR4S2Q8NH73 311 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 FGFBP3Q8TAT2 258 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 SLC25A40Q8TBP6 338 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 BCL2L2Q92843 193 aaPredicted RBP2.35□□□□□ -2.03
SLIRP-208ENST00000556956 POM121L2Q96KW2 1035 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 MGST2Q99735 147 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 SCNM1Q9BWG6 230 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 MAP1LC3CQ9BXW4 147 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 FGF23Q9GZV9 251 aaPredicted RBP2.35□□□□□ -2.03
SLIRP-208ENST00000556956 WDR54Q9H977 334 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 PLEKHA3Q9HB20 300 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 WNT16Q9UBV4 365 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 HSPB8Q9UJY1 196 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 WASHC3Q9Y3C0 194 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 SOX21Q9Y651 276 aaPredicted RBP2.35□□□□□ -2.03
SLIRP-208ENST00000556956 LRRK1Q38SD2 2015 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 NOTCH4Q99466 2003 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 PCNTO95613 3336 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 BRCA2P51587 3418 aa2.35□□□□□ -2.03
SLIRP-208ENST00000556956 TRBV20OR9-2A0A075B6H5 130 aa2.34□□□□□ -2.03
SLIRP-208ENST00000556956 IGKV3D-15A0A087WSY6 115 aa2.34□□□□□ -2.03
SLIRP-208ENST00000556956 IGHV1-45A0A0A0MS14 117 aa2.34□□□□□ -2.03
SLIRP-208ENST00000556956 TRGV8A0A0C4DH27 118 aa2.34□□□□□ -2.03
SLIRP-208ENST00000556956 A6NDN8 102 aa2.34□□□□□ -2.03
SLIRP-208ENST00000556956 GAGE10A6NGK3 116 aa2.34□□□□□ -2.03
SLIRP-208ENST00000556956 OR4C46A6NHA9 309 aa2.34□□□□□ -2.03
SLIRP-208ENST00000556956 C21orf140B9A014 251 aa2.34□□□□□ -2.03
SLIRP-208ENST00000556956 TMEM238C9JI98 176 aa2.34□□□□□ -2.03
SLIRP-208ENST00000556956 G3V4G9 280 aa2.34□□□□□ -2.03
SLIRP-208ENST00000556956 H3BRM9 83 aa2.34□□□□□ -2.03
SLIRP-208ENST00000556956 SYS1-DBNDD2H3BUS1 97 aa2.34□□□□□ -2.03
SLIRP-208ENST00000556956 M0QZ24 198 aa2.34□□□□□ -2.03
SLIRP-208ENST00000556956 CORTO00230 105 aa2.34□□□□□ -2.03
SLIRP-208ENST00000556956 RRHO14718 337 aa2.34□□□□□ -2.03
SLIRP-208ENST00000556956 SPINT2O43291 252 aa2.34□□□□□ -2.03
SLIRP-208ENST00000556956 OR7C2O60412 319 aa2.34□□□□□ -2.03
SLIRP-208ENST00000556956 SPINK4O60575 86 aa2.34□□□□□ -2.03
SLIRP-208ENST00000556956 FCGR3BO75015 233 aa2.34□□□□□ -2.03
SLIRP-208ENST00000556956 SS18L1O75177 396 aaPredicted RBP2.34□□□□□ -2.03
SLIRP-208ENST00000556956 FOXH1O75593 365 aa2.34□□□□□ -2.03
SLIRP-208ENST00000556956 HAND1O96004 215 aa2.34□□□□□ -2.03
SLIRP-208ENST00000556956 CGAP01215 116 aa2.34□□□□□ -2.03
SLIRP-208ENST00000556956 HBZP02008 142 aa2.34□□□□□ -2.03
SLIRP-208ENST00000556956 LIPFP07098 398 aa2.34□□□□□ -2.03
SLIRP-208ENST00000556956 IGLC1P0CG04 106 aa2.34□□□□□ -2.03
SLIRP-208ENST00000556956 SP9P0CG40 484 aa2.34□□□□□ -2.03
SLIRP-208ENST00000556956 CCL3P10147 92 aa2.34□□□□□ -2.03
SLIRP-208ENST00000556956 HIST1H1EP10412 219 aaKnown RBP2.34□□□□□ -2.03
SLIRP-208ENST00000556956 CA6P23280 308 aa2.34□□□□□ -2.03
SLIRP-208ENST00000556956 GPR183P32249 361 aa2.34□□□□□ -2.03
SLIRP-208ENST00000556956 DUTP33316 252 aaKnown RBP2.34□□□□□ -2.03
SLIRP-208ENST00000556956 CEACAM3P40198 252 aa2.34□□□□□ -2.03
SLIRP-208ENST00000556956 VDAC2P45880 294 aaPredicted RBP2.34□□□□□ -2.03
SLIRP-208ENST00000556956 GPR12P47775 334 aa2.34□□□□□ -2.03
SLIRP-208ENST00000556956 MFAP2P55001 183 aa2.34□□□□□ -2.03
SLIRP-208ENST00000556956 FOXL2P58012 376 aa2.34□□□□□ -2.03
SLIRP-208ENST00000556956 B3GALT5-AS1P59052 145 aa2.34□□□□□ -2.03
SLIRP-208ENST00000556956 FXYD3Q14802 87 aa2.34□□□□□ -2.03
SLIRP-208ENST00000556956 ZNF146Q15072 292 aa2.34□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 183.1 ms