RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 J3QW42 95 aa9.99□□□□□ -0.81
CCDC88C-211ENST00000556726 GATCO43716 136 aaKnown RBP9.99□□□□□ -0.81
CCDC88C-211ENST00000556726 SRIP30626 198 aa9.99□□□□□ -0.81
CCDC88C-211ENST00000556726 IBA57Q5T440 356 aaKnown RBP9.99□□□□□ -0.81
CCDC88C-211ENST00000556726 AGMATQ9BSE5 352 aa9.99□□□□□ -0.81
CCDC88C-211ENST00000556726 CSPG4Q6UVK1 2322 aa9.99□□□□□ -0.81
CCDC88C-211ENST00000556726 MPDU1O75352 247 aa9.99□□□□□ -0.81
CCDC88C-211ENST00000556726 TNFSF13O75888 250 aa9.99□□□□□ -0.81
CCDC88C-211ENST00000556726 SERF1AO75920 110 aa9.99□□□□□ -0.81
CCDC88C-211ENST00000556726 LY6HO94772 140 aa9.99□□□□□ -0.81
CCDC88C-211ENST00000556726 SRP14P37108 136 aaKnown RBP9.99□□□□□ -0.81
CCDC88C-211ENST00000556726 C10orf113Q5VZT2 155 aa9.99□□□□□ -0.81
CCDC88C-211ENST00000556726 LINC00469Q8N7U9 141 aa9.99□□□□□ -0.81
CCDC88C-211ENST00000556726 ABHD17AQ96GS6 310 aa9.99□□□□□ -0.81
CCDC88C-211ENST00000556726 NAGKQ9UJ70 344 aa9.99□□□□□ -0.81
CCDC88C-211ENST00000556726 NPIPB11E5RHQ5 1161 aa9.99□□□□□ -0.81
CCDC88C-211ENST00000556726 YPEL1O60688 119 aa9.99□□□□□ -0.81
CCDC88C-211ENST00000556726 KIR2DS2P43631 304 aa9.99□□□□□ -0.81
CCDC88C-211ENST00000556726 FOXA3P55318 350 aaPredicted RBP9.99□□□□□ -0.81
CCDC88C-211ENST00000556726 DIAPH2-AS1Q14236 149 aa9.99□□□□□ -0.81
CCDC88C-211ENST00000556726 VMA21Q3ZAQ7 101 aa9.99□□□□□ -0.81
CCDC88C-211ENST00000556726 LINC01560Q8TB33 94 aa9.99□□□□□ -0.81
CCDC88C-211ENST00000556726 YPEL2Q96QA6 119 aa9.99□□□□□ -0.81
CCDC88C-211ENST00000556726 WNT10AQ9GZT5 417 aa9.99□□□□□ -0.81
CCDC88C-211ENST00000556726 DMXL2Q8TDJ6 3036 aa9.98□□□□□ -0.81
CCDC88C-211ENST00000556726 C15orf61A6NNL5 157 aa9.98□□□□□ -0.81
CCDC88C-211ENST00000556726 PROP1O75360 226 aa9.98□□□□□ -0.81
CCDC88C-211ENST00000556726 ADTRPQ96IZ2 230 aa9.98□□□□□ -0.81
CCDC88C-211ENST00000556726 PAXXQ9BUH6 204 aa9.98□□□□□ -0.81
CCDC88C-211ENST00000556726 SSBP4Q9BWG4 385 aaPredicted RBP9.98□□□□□ -0.81
CCDC88C-211ENST00000556726 PLSCR4Q9NRQ2 329 aa9.98□□□□□ -0.81
CCDC88C-211ENST00000556726 TMEM167BQ9NRX6 74 aa9.98□□□□□ -0.81
CCDC88C-211ENST00000556726 ATMQ13315 3056 aa9.98□□□□□ -0.81
CCDC88C-211ENST00000556726 ARHGAP32A7KAX9 2087 aa9.98□□□□□ -0.81
CCDC88C-211ENST00000556726 FRMD6-AS1P0C7T7 363 aa9.98□□□□□ -0.81
CCDC88C-211ENST00000556726 RPEQ96AT9 228 aa9.98□□□□□ -0.81
CCDC88C-211ENST00000556726 ASCL3Q9NQ33 180 aa9.98□□□□□ -0.81
CCDC88C-211ENST00000556726 INSIG2Q9Y5U4 225 aa9.98□□□□□ -0.81
CCDC88C-211ENST00000556726 PGPA6NDG6 321 aa9.97□□□□□ -0.81
CCDC88C-211ENST00000556726 NCBP2LA6PVI3 153 aaKnown RBP9.97□□□□□ -0.81
CCDC88C-211ENST00000556726 TCAPO15273 167 aa9.97□□□□□ -0.81
CCDC88C-211ENST00000556726 GZMBP10144 247 aa9.97□□□□□ -0.81
CCDC88C-211ENST00000556726 BPIFB3P59826 476 aa9.97□□□□□ -0.81
CCDC88C-211ENST00000556726 TEX38Q6PEX7 206 aa9.97□□□□□ -0.81
CCDC88C-211ENST00000556726 ZNF664Q8N3J9 261 aa9.97□□□□□ -0.81
CCDC88C-211ENST00000556726 Q8TCH9 128 aa9.97□□□□□ -0.81
CCDC88C-211ENST00000556726 TNRC6AQ8NDV7 1962 aaKnown RBP9.97□□□□□ -0.81
CCDC88C-211ENST00000556726 MUC21A0A0G2JKD1 596 aa9.97□□□□□ -0.81
CCDC88C-211ENST00000556726 MUC21A0A140T8X8 626 aa9.97□□□□□ -0.81
CCDC88C-211ENST00000556726 C15orf65H3BRN8 121 aa9.97□□□□□ -0.81
CCDC88C-211ENST00000556726 RAB4AP20338 218 aa9.97□□□□□ -0.81
CCDC88C-211ENST00000556726 CASP6P55212 293 aa9.97□□□□□ -0.81
CCDC88C-211ENST00000556726 LGALS4P56470 323 aa9.97□□□□□ -0.81
CCDC88C-211ENST00000556726 MUC21Q5SSG8 566 aa9.97□□□□□ -0.81
CCDC88C-211ENST00000556726 TCTEX1D1Q8N7M0 179 aa9.97□□□□□ -0.81
CCDC88C-211ENST00000556726 TMEM170AQ8WVE7 144 aa9.97□□□□□ -0.81
CCDC88C-211ENST00000556726 C14orf144Q96I85 54 aa9.97□□□□□ -0.81
CCDC88C-211ENST00000556726 ADGRG4Q8IZF6 3080 aa9.97□□□□□ -0.81
CCDC88C-211ENST00000556726 ZFHX4Q86UP3 3567 aa9.97□□□□□ -0.81
CCDC88C-211ENST00000556726 DCHS1Q96JQ0 3298 aa9.97□□□□□ -0.81
CCDC88C-211ENST00000556726 STAG3L2P0CL84 134 aa9.97□□□□□ -0.81
CCDC88C-211ENST00000556726 STAG3L3P0CL85 134 aa9.97□□□□□ -0.81
CCDC88C-211ENST00000556726 HOXB1P14653 301 aaPredicted RBP9.97□□□□□ -0.81
CCDC88C-211ENST00000556726 ZNF25P17030 456 aaPredicted RBP9.97□□□□□ -0.81
CCDC88C-211ENST00000556726 Q56UQ5 140 aa9.97□□□□□ -0.81
CCDC88C-211ENST00000556726 NGBQ9NPG2 151 aa9.97□□□□□ -0.81
CCDC88C-211ENST00000556726 FAM87AP0C7U9 286 aa9.96□□□□□ -0.81
CCDC88C-211ENST00000556726 LMO1P25800 156 aa9.96□□□□□ -0.81
CCDC88C-211ENST00000556726 LYPD2Q6UXB3 125 aa9.96□□□□□ -0.81
CCDC88C-211ENST00000556726 PDPNQ86YL7 162 aa9.96□□□□□ -0.81
CCDC88C-211ENST00000556726 AMMECR1Q9Y4X0 333 aaPredicted RBP9.96□□□□□ -0.81
CCDC88C-211ENST00000556726 SERTM2A0A1B0GWG4 89 aa9.96□□□□□ -0.81
CCDC88C-211ENST00000556726 SRRM4A7MD48 611 aaKnown RBP9.96□□□□□ -0.81
CCDC88C-211ENST00000556726 C22orf34Q6ZV56 151 aa9.96□□□□□ -0.81
CCDC88C-211ENST00000556726 VENTXO95231 258 aa9.96□□□□□ -0.82
CCDC88C-211ENST00000556726 C8orf88P0DMB2 117 aa9.96□□□□□ -0.82
CCDC88C-211ENST00000556726 PRR30Q53SZ7 412 aaPredicted RBP9.96□□□□□ -0.82
CCDC88C-211ENST00000556726 REC114Q7Z4M0 266 aa9.96□□□□□ -0.82
CCDC88C-211ENST00000556726 OR1L4Q8NGR5 311 aa9.96□□□□□ -0.82
CCDC88C-211ENST00000556726 FAM222BQ8WU58 562 aa9.96□□□□□ -0.82
CCDC88C-211ENST00000556726 EAF1Q96JC9 268 aaPredicted RBP9.96□□□□□ -0.82
CCDC88C-211ENST00000556726 DNAJC4Q9NNZ3 241 aa9.96□□□□□ -0.82
CCDC88C-211ENST00000556726 ARL2-SNX15V9GYD0 113 aa9.96□□□□□ -0.82
CCDC88C-211ENST00000556726 DIRC3C9JPN6 131 aa9.95□□□□□ -0.82
CCDC88C-211ENST00000556726 JOSD1Q15040 202 aaPredicted RBP9.95□□□□□ -0.82
CCDC88C-211ENST00000556726 TEX50A0A1B0GTY4 177 aa9.95□□□□□ -0.82
CCDC88C-211ENST00000556726 F2Z2F3 143 aa9.95□□□□□ -0.82
CCDC88C-211ENST00000556726 CHEK1O14757 476 aa9.95□□□□□ -0.82
CCDC88C-211ENST00000556726 NUPR1O60356 82 aa9.95□□□□□ -0.82
CCDC88C-211ENST00000556726 IGHG3P01860 377 aa9.95□□□□□ -0.82
CCDC88C-211ENST00000556726 CT45A6P0DMU7 189 aa9.95□□□□□ -0.82
CCDC88C-211ENST00000556726 CT45A5P0DMU8 189 aa9.95□□□□□ -0.82
CCDC88C-211ENST00000556726 CT45A7P0DMV0 189 aa9.95□□□□□ -0.82
CCDC88C-211ENST00000556726 CCKARP32238 428 aa9.95□□□□□ -0.82
CCDC88C-211ENST00000556726 PLA2G2CQ5R387 149 aa9.95□□□□□ -0.82
CCDC88C-211ENST00000556726 ZNF600Q6ZNG1 722 aa9.95□□□□□ -0.82
CCDC88C-211ENST00000556726 C1orf162Q8NEQ5 155 aaPredicted RBP9.95□□□□□ -0.82
CCDC88C-211ENST00000556726 PRDM13Q9H4Q3 707 aa9.95□□□□□ -0.82
CCDC88C-211ENST00000556726 LPAR2Q9HBW0 351 aa9.95□□□□□ -0.82
CCDC88C-211ENST00000556726 TNFRSF19Q9NS68 423 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms