RNA–Protein interactions for RNA: ENST00000555535.1

SRP54-207, Transcript of signal recognition particle 54, humanhuman

TSL 4

Gene SRP54, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-207ENST00000555535 DMTNQ08495 405 aa0.15□□□□□ -2.39
SRP54-207ENST00000555535 MGAT3Q09327 533 aa0.15□□□□□ -2.39
SRP54-207ENST00000555535 MLLT11Q13015 90 aaPredicted RBP0.15□□□□□ -2.39
SRP54-207ENST00000555535 KRTAP21-1Q3LI58 79 aa0.15□□□□□ -2.39
SRP54-207ENST00000555535 SPRNQ5BIV9 151 aa0.15□□□□□ -2.39
SRP54-207ENST00000555535 GDF5OSQ5U4N7 250 aa0.15□□□□□ -2.39
SRP54-207ENST00000555535 SYPL2Q5VXT5 272 aa0.15□□□□□ -2.39
SRP54-207ENST00000555535 SPATA8Q6RVD6 105 aa0.15□□□□□ -2.39
SRP54-207ENST00000555535 Q6ZQT0 140 aa0.15□□□□□ -2.39
SRP54-207ENST00000555535 OR5A1Q8NGJ0 315 aa0.15□□□□□ -2.39
SRP54-207ENST00000555535 JOSD2Q8TAC2 188 aa0.15□□□□□ -2.39
SRP54-207ENST00000555535 ROPN1LQ96C74 230 aa0.15□□□□□ -2.39
SRP54-207ENST00000555535 SCGB3A1Q96QR1 104 aa0.15□□□□□ -2.39
SRP54-207ENST00000555535 DERL1Q9BUN8 251 aa0.15□□□□□ -2.39
SRP54-207ENST00000555535 OR51I1Q9H343 314 aa0.15□□□□□ -2.39
SRP54-207ENST00000555535 SPANXB1Q9NS25 103 aaPredicted RBP0.15□□□□□ -2.39
SRP54-207ENST00000555535 FGFR1OP2Q9NVK5 253 aa0.15□□□□□ -2.39
SRP54-207ENST00000555535 RSL24D1Q9UHA3 163 aaKnown RBP0.15□□□□□ -2.39
SRP54-207ENST00000555535 CACNA1EQ15878 2313 aa0.15□□□□□ -2.39
SRP54-207ENST00000555535 HECW2Q9P2P5 1572 aa0.15□□□□□ -2.39
SRP54-207ENST00000555535 NAV2Q8IVL1 2488 aa0.14□□□□□ -2.39
SRP54-207ENST00000555535 ZNF462Q96JM2 2506 aa0.14□□□□□ -2.39
SRP54-207ENST00000555535 PHRF1Q9P1Y6 1649 aaKnown RBP0.14□□□□□ -2.39
SRP54-207ENST00000555535 CLDN25C9JDP6 229 aa0.14□□□□□ -2.39
SRP54-207ENST00000555535 H0Y980 276 aa0.14□□□□□ -2.39
SRP54-207ENST00000555535 KLF7O75840 302 aaPredicted RBP0.14□□□□□ -2.39
SRP54-207ENST00000555535 IGKV1-5P01602 117 aa0.14□□□□□ -2.39
SRP54-207ENST00000555535 HIST1H2BOP23527 126 aa0.14□□□□□ -2.39
SRP54-207ENST00000555535 HIST1H2BBP33778 126 aa0.14□□□□□ -2.39
SRP54-207ENST00000555535 HIST1H2BDP58876 126 aa0.14□□□□□ -2.39
SRP54-207ENST00000555535 HIST1H2BCP62807 126 aa0.14□□□□□ -2.39
SRP54-207ENST00000555535 HBA1P69905 142 aa0.14□□□□□ -2.39
SRP54-207ENST00000555535 CAV1Q03135 178 aa0.14□□□□□ -2.39
SRP54-207ENST00000555535 STX5Q13190 355 aa0.14□□□□□ -2.39
SRP54-207ENST00000555535 BATFQ16520 125 aa0.14□□□□□ -2.39
SRP54-207ENST00000555535 HIST2H2BEQ16778 126 aa0.14□□□□□ -2.39
SRP54-207ENST00000555535 HIST2H2BFQ5QNW6 126 aaPredicted RBP0.14□□□□□ -2.39
SRP54-207ENST00000555535 IBA57Q5T440 356 aaKnown RBP0.14□□□□□ -2.39
SRP54-207ENST00000555535 HIST2H3PS2Q5TEC6 136 aa0.14□□□□□ -2.39
SRP54-207ENST00000555535 PLEKHG7Q6ZR37 379 aa0.14□□□□□ -2.39
SRP54-207ENST00000555535 Q6ZS49 121 aa0.14□□□□□ -2.39
SRP54-207ENST00000555535 ZNF826PQ6ZT77 177 aa0.14□□□□□ -2.39
SRP54-207ENST00000555535 PHF13Q86YI8 300 aaPredicted RBP0.14□□□□□ -2.39
SRP54-207ENST00000555535 DEFB125Q8N687 156 aa0.14□□□□□ -2.39
SRP54-207ENST00000555535 OR4D11Q8NGI4 311 aa0.14□□□□□ -2.39
SRP54-207ENST00000555535 ZNF418Q8TF45 676 aaPredicted RBP0.14□□□□□ -2.39
SRP54-207ENST00000555535 RASSF5Q8WWW0 418 aa0.14□□□□□ -2.39
SRP54-207ENST00000555535 HIST1H2BHQ93079 126 aa0.14□□□□□ -2.39
SRP54-207ENST00000555535 CMTM5Q96DZ9 223 aa0.14□□□□□ -2.39
SRP54-207ENST00000555535 HIST1H2BNQ99877 126 aa0.14□□□□□ -2.39
SRP54-207ENST00000555535 HIST1H2BMQ99879 126 aa0.14□□□□□ -2.39
SRP54-207ENST00000555535 C11orf68Q9H3H3 251 aaKnown RBP0.14□□□□□ -2.39
SRP54-207ENST00000555535 SLC39A9Q9NUM3 307 aa0.14□□□□□ -2.39
SRP54-207ENST00000555535 IMP3Q9NV31 184 aaKnown RBP0.14□□□□□ -2.39
SRP54-207ENST00000555535 PKIGQ9Y2B9 76 aa0.14□□□□□ -2.39
SRP54-207ENST00000555535 TNCP24821 2201 aa0.14□□□□□ -2.39
SRP54-207ENST00000555535 NUP210LQ5VU65 1888 aa0.14□□□□□ -2.39
SRP54-207ENST00000555535 TET1Q8NFU7 2136 aa0.13□□□□□ -2.39
SRP54-207ENST00000555535 LOC110117498A0A087WWA1 95 aa0.13□□□□□ -2.39
SRP54-207ENST00000555535 LINC00854A0A1B0GVQ3 168 aa0.13□□□□□ -2.39
SRP54-207ENST00000555535 OR2T8A6NH00 312 aa0.13□□□□□ -2.39
SRP54-207ENST00000555535 CXCR6O00574 342 aa0.13□□□□□ -2.39
SRP54-207ENST00000555535 APOEP02649 317 aa0.13□□□□□ -2.39
SRP54-207ENST00000555535 C1QAP02745 245 aa0.13□□□□□ -2.39
SRP54-207ENST00000555535 KRT7P08729 469 aa0.13□□□□□ -2.39
SRP54-207ENST00000555535 UCHL3P15374 230 aa0.13□□□□□ -2.39
SRP54-207ENST00000555535 MARCKSL1P49006 195 aa0.13□□□□□ -2.39
SRP54-207ENST00000555535 NAA20P61599 178 aa0.13□□□□□ -2.39
SRP54-207ENST00000555535 CNBPP62633 177 aaKnown RBP0.13□□□□□ -2.39
SRP54-207ENST00000555535 CCL20P78556 96 aa0.13□□□□□ -2.39
SRP54-207ENST00000555535 IFITM2Q01629 132 aa0.13□□□□□ -2.39
SRP54-207ENST00000555535 RHEBQ15382 184 aa0.13□□□□□ -2.39
SRP54-207ENST00000555535 DEFB113Q30KQ7 82 aa0.13□□□□□ -2.39
SRP54-207ENST00000555535 SPANXN5Q5MJ07 72 aa0.13□□□□□ -2.39
SRP54-207ENST00000555535 SPANXN3Q5MJ09 141 aa0.13□□□□□ -2.39
SRP54-207ENST00000555535 CLVS2Q5SYC1 327 aa0.13□□□□□ -2.39
SRP54-207ENST00000555535 PDPK2PQ6A1A2 396 aa0.13□□□□□ -2.39
SRP54-207ENST00000555535 CLEC6AQ6EIG7 209 aa0.13□□□□□ -2.39
SRP54-207ENST00000555535 RPL22L1Q6P5R6 122 aaKnown RBP0.13□□□□□ -2.39
SRP54-207ENST00000555535 MIR17HGQ75NE6 70 aa0.13□□□□□ -2.39
SRP54-207ENST00000555535 FAM9CQ8IZT9 166 aa0.13□□□□□ -2.39
SRP54-207ENST00000555535 Q8N402 240 aa0.13□□□□□ -2.39
SRP54-207ENST00000555535 TMEM156Q8N614 296 aa0.13□□□□□ -2.39
SRP54-207ENST00000555535 PFN4Q8NHR9 129 aa0.13□□□□□ -2.39
SRP54-207ENST00000555535 MRPL30Q8TCC3 161 aaKnown RBP0.13□□□□□ -2.39
SRP54-207ENST00000555535 SFT2D1Q8WV19 159 aa0.13□□□□□ -2.39
SRP54-207ENST00000555535 RAB8BQ92930 207 aa0.13□□□□□ -2.39
SRP54-207ENST00000555535 LINC00526Q96FQ7 95 aa0.13□□□□□ -2.39
SRP54-207ENST00000555535 C6orf62Q9GZU0 229 aaPredicted RBP0.13□□□□□ -2.39
SRP54-207ENST00000555535 TLNRD1Q9H1K6 362 aa0.13□□□□□ -2.39
SRP54-207ENST00000555535 OR51V1Q9H2C8 321 aa0.13□□□□□ -2.39
SRP54-207ENST00000555535 XPNPEP1Q9NQW7 623 aa0.13□□□□□ -2.39
SRP54-207ENST00000555535 C3orf18Q9UK00 162 aa0.13□□□□□ -2.39
SRP54-207ENST00000555535 ERGIC3Q9Y282 383 aa0.13□□□□□ -2.39
SRP54-207ENST00000555535 LOC285556D6RIA3 1793 aa0.13□□□□□ -2.39
SRP54-207ENST00000555535 PTPRDP23468 1912 aa0.13□□□□□ -2.39
SRP54-207ENST00000555535 BCORL1Q5H9F3 1711 aa0.13□□□□□ -2.39
SRP54-207ENST00000555535 MTUS2Q5JR59 1369 aa0.12□□□□□ -2.39
SRP54-207ENST00000555535 TGIF2-C20orf24A0A0A6YYL0 155 aa0.12□□□□□ -2.39
SRP54-207ENST00000555535 A0A0D9SG52 128 aa0.12□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 88.6 ms