RNA–Protein interactions for RNA: ENST00000553529.5

SHMT2-206, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-206ENST00000553529 OR51S1Q8NGJ8 323 aa13.59□□□□□ -0.23
SHMT2-206ENST00000553529 TMEM230Q96A57 120 aa13.59□□□□□ -0.23
SHMT2-206ENST00000553529 ZNF486Q96H40 463 aaPredicted RBP13.59□□□□□ -0.23
SHMT2-206ENST00000553529 FKBP11Q9NYL4 201 aa13.59□□□□□ -0.23
SHMT2-206ENST00000553529 UFC1Q9Y3C8 167 aa13.59□□□□□ -0.23
SHMT2-206ENST00000553529 C3orf84H3BNL1 204 aa13.58□□□□□ -0.24
SHMT2-206ENST00000553529 APOHP02749 345 aaPredicted RBP13.58□□□□□ -0.24
SHMT2-206ENST00000553529 TBPP20226 339 aa13.58□□□□□ -0.24
SHMT2-206ENST00000553529 UCP1P25874 307 aa13.58□□□□□ -0.24
SHMT2-206ENST00000553529 TNFSF8P32971 234 aa13.58□□□□□ -0.24
SHMT2-206ENST00000553529 MRPL27Q9P0M9 148 aaKnown RBP13.58□□□□□ -0.24
SHMT2-206ENST00000553529 CSMD3Q7Z407 3707 aa13.58□□□□□ -0.24
SHMT2-206ENST00000553529 IGKV3-7A0A075B6H7 116 aa13.57□□□□□ -0.24
SHMT2-206ENST00000553529 IGHV3-66A0A0C4DH42 116 aa13.57□□□□□ -0.24
SHMT2-206ENST00000553529 NDUFA4O00483 81 aa13.57□□□□□ -0.24
SHMT2-206ENST00000553529 RNASE2P10153 161 aaKnown RBP13.57□□□□□ -0.24
SHMT2-206ENST00000553529 RPL5P46777 297 aaKnown RBP13.57□□□□□ -0.24
SHMT2-206ENST00000553529 LILRB2Q8N423 598 aa13.57□□□□□ -0.24
SHMT2-206ENST00000553529 ZNF114Q8NC26 417 aa13.57□□□□□ -0.24
SHMT2-206ENST00000553529 GLYATL2Q8WU03 294 aa13.57□□□□□ -0.24
SHMT2-206ENST00000553529 RNF2Q99496 336 aa13.57□□□□□ -0.24
SHMT2-206ENST00000553529 FNDC4Q9H6D8 234 aaPredicted RBP13.57□□□□□ -0.24
SHMT2-206ENST00000553529 NAA60Q9H7X0 242 aa13.57□□□□□ -0.24
SHMT2-206ENST00000553529 DAZ1Q9NQZ3 744 aaKnown RBP13.57□□□□□ -0.24
SHMT2-206ENST00000553529 IFNA17P01571 189 aa13.56□□□□□ -0.24
SHMT2-206ENST00000553529 LYL1P12980 280 aa13.56□□□□□ -0.24
SHMT2-206ENST00000553529 ODF3L2Q3SX64 289 aa13.56□□□□□ -0.24
SHMT2-206ENST00000553529 RBPMS2Q6ZRY4 209 aaKnown RBP13.56□□□□□ -0.24
SHMT2-206ENST00000553529 SELENOHQ8IZQ5 122 aaKnown RBP13.56□□□□□ -0.24
SHMT2-206ENST00000553529 SLC35G3Q8N808 338 aa13.56□□□□□ -0.24
SHMT2-206ENST00000553529 OR1L6Q8NGR2 347 aa13.56□□□□□ -0.24
SHMT2-206ENST00000553529 ZFAND1Q8TCF1 268 aa13.56□□□□□ -0.24
SHMT2-206ENST00000553529 GPR146Q96CH1 333 aa13.56□□□□□ -0.24
SHMT2-206ENST00000553529 SOSTQ9BQB4 213 aa13.56□□□□□ -0.24
SHMT2-206ENST00000553529 PALMDQ9NP74 551 aa13.56□□□□□ -0.24
SHMT2-206ENST00000553529 GPR132Q9UNW8 380 aa13.56□□□□□ -0.24
SHMT2-206ENST00000553529 ANKRD20A5PA0PJZ0 165 aa13.55□□□□□ -0.24
SHMT2-206ENST00000553529 CTDSPLO15194 276 aa13.55□□□□□ -0.24
SHMT2-206ENST00000553529 YIF1AO95070 293 aa13.55□□□□□ -0.24
SHMT2-206ENST00000553529 AKAIN1P0CW23 69 aa13.55□□□□□ -0.24
SHMT2-206ENST00000553529 TFPI2P48307 235 aa13.55□□□□□ -0.24
SHMT2-206ENST00000553529 HOXA1P49639 335 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-206ENST00000553529 ELLP55199 621 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-206ENST00000553529 SLC16A13Q7RTY0 426 aa13.55□□□□□ -0.24
SHMT2-206ENST00000553529 CCDC71LQ8N9Z2 235 aa13.55□□□□□ -0.24
SHMT2-206ENST00000553529 MCFD2Q8NI22 146 aa13.55□□□□□ -0.24
SHMT2-206ENST00000553529 TMEM222Q9H0R3 208 aa13.55□□□□□ -0.24
SHMT2-206ENST00000553529 TENM2Q9NT68 2774 aa13.54□□□□□ -0.24
SHMT2-206ENST00000553529 TEX13DA0A0J9YY54 714 aaPredicted RBP13.54□□□□□ -0.24
SHMT2-206ENST00000553529 A0A1B0GU03 582 aa13.54□□□□□ -0.24
SHMT2-206ENST00000553529 DISC1C4P0D8 188 aa13.54□□□□□ -0.24
SHMT2-206ENST00000553529 CYB5BO43169 146 aa13.54□□□□□ -0.24
SHMT2-206ENST00000553529 MFAP4P55083 255 aa13.54□□□□□ -0.24
SHMT2-206ENST00000553529 TMEM268Q5VZI3 342 aa13.54□□□□□ -0.24
SHMT2-206ENST00000553529 SPSB3Q6PJ21 355 aa13.54□□□□□ -0.24
SHMT2-206ENST00000553529 RNASE11Q8TAA1 199 aaKnown RBP13.54□□□□□ -0.24
SHMT2-206ENST00000553529 TMEM170AQ8WVE7 144 aa13.54□□□□□ -0.24
SHMT2-206ENST00000553529 MARC2Q969Z3 335 aa13.54□□□□□ -0.24
SHMT2-206ENST00000553529 NXF2Q9GZY0 626 aaKnown RBP13.54□□□□□ -0.24
SHMT2-206ENST00000553529 CACNG5Q9UF02 275 aa13.54□□□□□ -0.24
SHMT2-206ENST00000553529 SMPXQ9UHP9 88 aa13.54□□□□□ -0.24
SHMT2-206ENST00000553529 C14orf166Q9Y224 244 aaKnown RBP13.54□□□□□ -0.24
SHMT2-206ENST00000553529 IGHV7-4-1A0A0J9YVY3 117 aa13.53□□□□□ -0.24
SHMT2-206ENST00000553529 CRYM-AS1A6NIL9 109 aa13.53□□□□□ -0.24
SHMT2-206ENST00000553529 CHEK1O14757 476 aa13.53□□□□□ -0.24
SHMT2-206ENST00000553529 NUPL2O15504 423 aaKnown RBP13.53□□□□□ -0.24
SHMT2-206ENST00000553529 GSTZ1O43708 216 aaPredicted RBP13.53□□□□□ -0.24
SHMT2-206ENST00000553529 CDS2O95674 445 aa13.53□□□□□ -0.24
SHMT2-206ENST00000553529 ERHP84090 104 aaKnown RBP13.53□□□□□ -0.24
SHMT2-206ENST00000553529 EWSR1Q01844 656 aaKnown RBP eCLIP13.53□□□□□ -0.24
SHMT2-206ENST00000553529 TOMM20LQ6UXN7 152 aa13.53□□□□□ -0.24
SHMT2-206ENST00000553529 APRG1Q8IVJ8 170 aa13.53□□□□□ -0.24
SHMT2-206ENST00000553529 GBGT1Q8N5D6 347 aa13.53□□□□□ -0.24
SHMT2-206ENST00000553529 C15orf40Q8WUR7 153 aa13.53□□□□□ -0.24
SHMT2-206ENST00000553529 RHPN1-AS1Q9BWJ2 59 aa13.53□□□□□ -0.24
SHMT2-206ENST00000553529 ZFAND3Q9H8U3 227 aa13.53□□□□□ -0.24
SHMT2-206ENST00000553529 MCUBQ9NWR8 336 aa13.53□□□□□ -0.24
SHMT2-206ENST00000553529 V9GYH0 126 aa13.53□□□□□ -0.24
SHMT2-206ENST00000553529 FABP12A6NFH5 140 aa13.52□□□□□ -0.25
SHMT2-206ENST00000553529 GNG7O60262 68 aa13.52□□□□□ -0.25
SHMT2-206ENST00000553529 RPL35AP18077 110 aaKnown RBP13.52□□□□□ -0.25
SHMT2-206ENST00000553529 SUPT4H1P63272 117 aaKnown RBP13.52□□□□□ -0.25
SHMT2-206ENST00000553529 MRPS10P82664 201 aaKnown RBP13.52□□□□□ -0.25
SHMT2-206ENST00000553529 SSBP1Q04837 148 aaKnown RBP13.52□□□□□ -0.25
SHMT2-206ENST00000553529 ZNF79Q15937 498 aa13.52□□□□□ -0.25
SHMT2-206ENST00000553529 PVRIGQ6DKI7 326 aa13.52□□□□□ -0.25
SHMT2-206ENST00000553529 ST8SIA2Q92186 375 aa13.52□□□□□ -0.25
SHMT2-206ENST00000553529 TRIM63Q969Q1 353 aa13.52□□□□□ -0.25
SHMT2-206ENST00000553529 RBM38Q9H0Z9 239 aaKnown RBP13.52□□□□□ -0.25
SHMT2-206ENST00000553529 HYDINQ4G0P3 5121 aa13.52□□□□□ -0.25
SHMT2-206ENST00000553529 C15orf62A8K5M9 175 aa13.51□□□□□ -0.25
SHMT2-206ENST00000553529 TSPAN4O14817 238 aa13.51□□□□□ -0.25
SHMT2-206ENST00000553529 TMEM187Q14656 261 aa13.51□□□□□ -0.25
SHMT2-206ENST00000553529 FAM24BQ8N5W8 94 aa13.51□□□□□ -0.25
SHMT2-206ENST00000553529 TMEM116Q8NCL8 245 aa13.51□□□□□ -0.25
SHMT2-206ENST00000553529 RRNAD1Q96FB5 475 aaKnown RBP13.51□□□□□ -0.25
SHMT2-206ENST00000553529 OR10C1Q96KK4 312 aa13.51□□□□□ -0.25
SHMT2-206ENST00000553529 SPAG8Q99932 426 aaPredicted RBP13.51□□□□□ -0.25
SHMT2-206ENST00000553529 BCL7BQ9BQE9 202 aa13.51□□□□□ -0.25
SHMT2-206ENST00000553529 OVOL2Q9BRP0 275 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms