RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 KIAA1644Q3SXP7 199 aa6.1□□□□□ -1.43
LIMA1-213ENST00000552720 PIP4P1Q86T03 277 aa6.1□□□□□ -1.43
LIMA1-213ENST00000552720 OR2T6Q8NHC8 308 aa6.1□□□□□ -1.43
LIMA1-213ENST00000552720 SNHG12Q9BXW3 62 aa6.1□□□□□ -1.43
LIMA1-213ENST00000552720 HELTA6NFD8 242 aa6.1□□□□□ -1.43
LIMA1-213ENST00000552720 C9JCJ5 164 aa6.1□□□□□ -1.43
LIMA1-213ENST00000552720 FCN1O00602 326 aa6.1□□□□□ -1.43
LIMA1-213ENST00000552720 CA1P00915 261 aaPredicted RBP6.1□□□□□ -1.43
LIMA1-213ENST00000552720 CRISP2P16562 243 aa6.1□□□□□ -1.43
LIMA1-213ENST00000552720 CHRNB4P30926 498 aa6.1□□□□□ -1.43
LIMA1-213ENST00000552720 GNG4P50150 75 aa6.1□□□□□ -1.43
LIMA1-213ENST00000552720 SELENOTP62341 195 aa6.1□□□□□ -1.43
LIMA1-213ENST00000552720 RAB31Q13636 194 aa6.1□□□□□ -1.43
LIMA1-213ENST00000552720 C10orf55Q5SWW7 151 aa6.1□□□□□ -1.43
LIMA1-213ENST00000552720 ZNF788Q6ZQV5 615 aa6.1□□□□□ -1.43
LIMA1-213ENST00000552720 LHFPL4Q7Z7J7 247 aa6.1□□□□□ -1.43
LIMA1-213ENST00000552720 LINC00479Q96M42 142 aa6.1□□□□□ -1.43
LIMA1-213ENST00000552720 UHRF2Q96PU4 802 aa6.1□□□□□ -1.43
LIMA1-213ENST00000552720 MRPL20Q9BYC9 149 aaKnown RBP6.1□□□□□ -1.43
LIMA1-213ENST00000552720 ZNF318Q5VUA4 2279 aa6.09□□□□□ -1.43
LIMA1-213ENST00000552720 ITGB1BP1O14713 200 aa6.09□□□□□ -1.43
LIMA1-213ENST00000552720 RNASE2P10153 161 aaKnown RBP6.09□□□□□ -1.43
LIMA1-213ENST00000552720 AREGP15514 252 aa6.09□□□□□ -1.43
LIMA1-213ENST00000552720 GATA4P43694 442 aa6.09□□□□□ -1.43
LIMA1-213ENST00000552720 SUMO1P63165 101 aaKnown RBP6.09□□□□□ -1.43
LIMA1-213ENST00000552720 POU2AF1Q16633 256 aa6.09□□□□□ -1.43
LIMA1-213ENST00000552720 RPEL1Q2QD12 228 aa6.09□□□□□ -1.43
LIMA1-213ENST00000552720 TOMM20LQ6UXN7 152 aa6.09□□□□□ -1.43
LIMA1-213ENST00000552720 SLC25A48Q6ZT89 311 aaKnown RBP6.09□□□□□ -1.43
LIMA1-213ENST00000552720 C1orf174Q8IYL3 243 aa6.09□□□□□ -1.43
LIMA1-213ENST00000552720 ZNF436-AS1Q8NC38 126 aaPredicted RBP6.09□□□□□ -1.43
LIMA1-213ENST00000552720 HSPB9Q9BQS6 159 aa6.09□□□□□ -1.43
LIMA1-213ENST00000552720 RPUSD1Q9UJJ7 312 aaKnown RBP6.09□□□□□ -1.43
LIMA1-213ENST00000552720 MALRD1Q5VYJ5 2156 aa6.09□□□□□ -1.43
LIMA1-213ENST00000552720 SVEP1Q4LDE5 3571 aa6.09□□□□□ -1.43
LIMA1-213ENST00000552720 CEP295Q9C0D2 2601 aa6.09□□□□□ -1.43
LIMA1-213ENST00000552720 MT-CO2P00403 227 aa6.09□□□□□ -1.43
LIMA1-213ENST00000552720 IGLV2-8P01709 118 aa6.09□□□□□ -1.43
LIMA1-213ENST00000552720 PRR31Q5SQ13 230 aa6.09□□□□□ -1.43
LIMA1-213ENST00000552720 BEND2Q8NDZ0 799 aa6.09□□□□□ -1.43
LIMA1-213ENST00000552720 BTF3L4Q96K17 158 aa6.09□□□□□ -1.43
LIMA1-213ENST00000552720 FAM103A1Q9BTL3 118 aaKnown RBP6.09□□□□□ -1.43
LIMA1-213ENST00000552720 TMEM106BQ9NUM4 274 aa6.09□□□□□ -1.43
LIMA1-213ENST00000552720 IL19Q9UHD0 177 aa6.09□□□□□ -1.43
LIMA1-213ENST00000552720 PRNDQ9UKY0 176 aa6.09□□□□□ -1.43
LIMA1-213ENST00000552720 KIR2DL5BA0A0G2JN68 375 aa6.08□□□□□ -1.44
LIMA1-213ENST00000552720 KIR2DL5BA0A0G2JPC4 375 aa6.08□□□□□ -1.44
LIMA1-213ENST00000552720 PYYP10082 97 aa6.08□□□□□ -1.44
LIMA1-213ENST00000552720 MGST1P10620 155 aaKnown RBP6.08□□□□□ -1.44
LIMA1-213ENST00000552720 CD40P25942 277 aa6.08□□□□□ -1.44
LIMA1-213ENST00000552720 C1orf194Q5T5A4 169 aa6.08□□□□□ -1.44
LIMA1-213ENST00000552720 TPTE2P1Q5T6R2 138 aa6.08□□□□□ -1.44
LIMA1-213ENST00000552720 MRPL54Q6P161 138 aaKnown RBP6.08□□□□□ -1.44
LIMA1-213ENST00000552720 BAGE3Q86Y29 109 aa6.08□□□□□ -1.44
LIMA1-213ENST00000552720 BAGE2Q86Y30 109 aa6.08□□□□□ -1.44
LIMA1-213ENST00000552720 KIR2DL5AQ8N109 375 aa6.08□□□□□ -1.44
LIMA1-213ENST00000552720 ZADH2Q8N4Q0 377 aa6.08□□□□□ -1.44
LIMA1-213ENST00000552720 VN1R17PQ8TDU5 208 aa6.08□□□□□ -1.44
LIMA1-213ENST00000552720 FAM168AQ92567 244 aa6.08□□□□□ -1.44
LIMA1-213ENST00000552720 ADTRPQ96IZ2 230 aa6.08□□□□□ -1.44
LIMA1-213ENST00000552720 HARBI1Q96MB7 349 aa6.08□□□□□ -1.44
LIMA1-213ENST00000552720 RCHY1Q96PM5 261 aa6.08□□□□□ -1.44
LIMA1-213ENST00000552720 SSBP3Q9BWW4 388 aaPredicted RBP6.08□□□□□ -1.44
LIMA1-213ENST00000552720 GNB4Q9HAV0 340 aa6.08□□□□□ -1.44
LIMA1-213ENST00000552720 TECRQ9NZ01 308 aaKnown RBP6.08□□□□□ -1.44
LIMA1-213ENST00000552720 MRPL36Q9P0J6 103 aaKnown RBP6.08□□□□□ -1.44
LIMA1-213ENST00000552720 SLC25A10Q9UBX3 287 aaPredicted RBP6.08□□□□□ -1.44
LIMA1-213ENST00000552720 A8MXE2 369 aa6.08□□□□□ -1.44
LIMA1-213ENST00000552720 BTF3P20290 206 aaKnown RBP6.08□□□□□ -1.44
LIMA1-213ENST00000552720 SSTP61278 116 aa6.08□□□□□ -1.44
LIMA1-213ENST00000552720 CD69Q07108 199 aa6.08□□□□□ -1.44
LIMA1-213ENST00000552720 RTL8BQ17RB0 113 aa6.08□□□□□ -1.44
LIMA1-213ENST00000552720 C1orf185Q5T7R7 199 aa6.08□□□□□ -1.44
LIMA1-213ENST00000552720 RUSC1-AS1Q66K80 236 aa6.08□□□□□ -1.44
LIMA1-213ENST00000552720 TMEM167BQ9NRX6 74 aa6.08□□□□□ -1.44
LIMA1-213ENST00000552720 SERTAD4Q9NUC0 356 aa6.08□□□□□ -1.44
LIMA1-213ENST00000552720 NAT8BQ9UHF3 227 aa6.08□□□□□ -1.44
LIMA1-213ENST00000552720 ZNF257Q9Y2Q1 563 aa6.08□□□□□ -1.44
LIMA1-213ENST00000552720 PAM16Q9Y3D7 125 aa6.08□□□□□ -1.44
LIMA1-213ENST00000552720 HRNRQ86YZ3 2850 aaPredicted RBP6.07□□□□□ -1.44
LIMA1-213ENST00000552720 PSMB11A5LHX3 300 aa6.07□□□□□ -1.44
LIMA1-213ENST00000552720 CGB1A6NKQ9 187 aa6.07□□□□□ -1.44
LIMA1-213ENST00000552720 CEACAM4O75871 244 aa6.07□□□□□ -1.44
LIMA1-213ENST00000552720 PLAUP00749 431 aa6.07□□□□□ -1.44
LIMA1-213ENST00000552720 REG1AP05451 166 aa6.07□□□□□ -1.44
LIMA1-213ENST00000552720 OR5G3P0C626 314 aa6.07□□□□□ -1.44
LIMA1-213ENST00000552720 COMPP49747 757 aaPredicted RBP6.07□□□□□ -1.44
LIMA1-213ENST00000552720 DLX1P56177 255 aa6.07□□□□□ -1.44
LIMA1-213ENST00000552720 TPPP2P59282 170 aa6.07□□□□□ -1.44
LIMA1-213ENST00000552720 NUTF2P61970 127 aaKnown RBP6.07□□□□□ -1.44
LIMA1-213ENST00000552720 PRB3Q04118 309 aaPredicted RBP6.07□□□□□ -1.44
LIMA1-213ENST00000552720 C2orf83Q53S99 150 aa6.07□□□□□ -1.44
LIMA1-213ENST00000552720 C19orf35Q6ZS72 473 aa6.07□□□□□ -1.44
LIMA1-213ENST00000552720 CORO2AQ92828 525 aa6.07□□□□□ -1.44
LIMA1-213ENST00000552720 RITA1Q96K30 269 aa6.07□□□□□ -1.44
LIMA1-213ENST00000552720 FAM167A-AS1Q96KT0 104 aa6.07□□□□□ -1.44
LIMA1-213ENST00000552720 SGK494Q96LW2 274 aa6.07□□□□□ -1.44
LIMA1-213ENST00000552720 SLC25A33Q9BSK2 321 aa6.07□□□□□ -1.44
LIMA1-213ENST00000552720 SLC25A2Q9BXI2 301 aa6.07□□□□□ -1.44
LIMA1-213ENST00000552720 NCOR1P1Q9H4R4 102 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms