RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 SP6Q3SY56 376 aa12.17□□□□□ -0.46
VPS29-207ENST00000549970 STEAP1BQ6NZ63 245 aa12.17□□□□□ -0.46
VPS29-207ENST00000549970 SLC35G3Q8N808 338 aa12.17□□□□□ -0.46
VPS29-207ENST00000549970 CCDC71LQ8N9Z2 235 aa12.17□□□□□ -0.46
VPS29-207ENST00000549970 OR13C8Q8NGS7 320 aa12.17□□□□□ -0.46
VPS29-207ENST00000549970 TERB2Q8NHR7 220 aa12.17□□□□□ -0.46
VPS29-207ENST00000549970 ZFAND1Q8TCF1 268 aa12.17□□□□□ -0.46
VPS29-207ENST00000549970 ZNF414Q96IQ9 312 aa12.17□□□□□ -0.46
VPS29-207ENST00000549970 PLECQ15149 4684 aaKnown RBP12.17□□□□□ -0.46
VPS29-207ENST00000549970 A0A0B4J293 547 aa12.16□□□□□ -0.46
VPS29-207ENST00000549970 ST8SIA3O43173 380 aa12.16□□□□□ -0.46
VPS29-207ENST00000549970 IFNA17P01571 189 aa12.16□□□□□ -0.46
VPS29-207ENST00000549970 P0C879 139 aa12.16□□□□□ -0.46
VPS29-207ENST00000549970 FAAP20Q6NZ36 180 aa12.16□□□□□ -0.46
VPS29-207ENST00000549970 CLVS1Q8IUQ0 354 aaPredicted RBP12.16□□□□□ -0.46
VPS29-207ENST00000549970 MARCH1Q8TCQ1 289 aa12.16□□□□□ -0.46
VPS29-207ENST00000549970 TXN2Q99757 166 aa12.16□□□□□ -0.46
VPS29-207ENST00000549970 HYDINQ4G0P3 5121 aa12.15□□□□□ -0.46
VPS29-207ENST00000549970 IGHV3-49A0A0A0MS15 119 aa12.15□□□□□ -0.46
VPS29-207ENST00000549970 GNG7O60262 68 aa12.15□□□□□ -0.46
VPS29-207ENST00000549970 ATG12O94817 140 aa12.15□□□□□ -0.46
VPS29-207ENST00000549970 CTSDP07339 412 aaPredicted RBP12.15□□□□□ -0.46
VPS29-207ENST00000549970 FCGR2BP31994 310 aaPredicted RBP12.15□□□□□ -0.46
VPS29-207ENST00000549970 SNCAP37840 140 aa12.15□□□□□ -0.46
VPS29-207ENST00000549970 ODF3L2Q3SX64 289 aa12.15□□□□□ -0.46
VPS29-207ENST00000549970 RNASE11Q8TAA1 199 aaKnown RBP12.15□□□□□ -0.46
VPS29-207ENST00000549970 IL17DQ8TAD2 202 aa12.15□□□□□ -0.46
VPS29-207ENST00000549970 OVOL2Q9BRP0 275 aa12.15□□□□□ -0.46
VPS29-207ENST00000549970 PDCD10Q9BUL8 212 aa12.15□□□□□ -0.46
VPS29-207ENST00000549970 NXF2Q9GZY0 626 aaKnown RBP12.15□□□□□ -0.46
VPS29-207ENST00000549970 SMPXQ9UHP9 88 aa12.15□□□□□ -0.46
VPS29-207ENST00000549970 A0A0G2JRQ6 117 aa12.14□□□□□ -0.47
VPS29-207ENST00000549970 IGHV7-4-1A0A0J9YVY3 117 aa12.14□□□□□ -0.47
VPS29-207ENST00000549970 OR4C46A6NHA9 309 aa12.14□□□□□ -0.47
VPS29-207ENST00000549970 UCP1P25874 307 aa12.14□□□□□ -0.47
VPS29-207ENST00000549970 HOXA1P49639 335 aaPredicted RBP12.14□□□□□ -0.47
VPS29-207ENST00000549970 MRPS10P82664 201 aaKnown RBP12.14□□□□□ -0.47
VPS29-207ENST00000549970 SSBP1Q04837 148 aaKnown RBP12.14□□□□□ -0.47
VPS29-207ENST00000549970 TMEM116Q8NCL8 245 aa12.14□□□□□ -0.47
VPS29-207ENST00000549970 RRNAD1Q96FB5 475 aaKnown RBP12.14□□□□□ -0.47
VPS29-207ENST00000549970 RNF2Q99496 336 aa12.14□□□□□ -0.47
VPS29-207ENST00000549970 RHPN1-AS1Q9BWJ2 59 aa12.14□□□□□ -0.47
VPS29-207ENST00000549970 ALMS1Q8TCU4 4167 aa12.13□□□□□ -0.47
VPS29-207ENST00000549970 IGKV3-7A0A075B6H7 116 aa12.13□□□□□ -0.47
VPS29-207ENST00000549970 IGHV3OR16-13A0A075B7E8 117 aa12.13□□□□□ -0.47
VPS29-207ENST00000549970 IGHV3-74A0A0B4J1X5 117 aa12.13□□□□□ -0.47
VPS29-207ENST00000549970 CHEK1O14757 476 aa12.13□□□□□ -0.47
VPS29-207ENST00000549970 ETV6P41212 452 aa12.13□□□□□ -0.47
VPS29-207ENST00000549970 IL18Q14116 193 aa12.13□□□□□ -0.47
VPS29-207ENST00000549970 MEF2DQ14814 521 aa12.13□□□□□ -0.47
VPS29-207ENST00000549970 DUSP18Q8NEJ0 188 aa12.13□□□□□ -0.47
VPS29-207ENST00000549970 SMIM4Q8WVI0 70 aa12.13□□□□□ -0.47
VPS29-207ENST00000549970 DIRAS2Q96HU8 199 aa12.13□□□□□ -0.47
VPS29-207ENST00000549970 OR10C1Q96KK4 312 aa12.13□□□□□ -0.47
VPS29-207ENST00000549970 ENY2Q9NPA8 101 aa12.13□□□□□ -0.47
VPS29-207ENST00000549970 C14orf166Q9Y224 244 aaKnown RBP12.13□□□□□ -0.47
VPS29-207ENST00000549970 TRAV14DV4A0A0A6YYC5 116 aa12.12□□□□□ -0.47
VPS29-207ENST00000549970 DISC1C4P0D8 188 aa12.12□□□□□ -0.47
VPS29-207ENST00000549970 INS-IGF2F8WCM5 200 aa12.12□□□□□ -0.47
VPS29-207ENST00000549970 OR5AC1P0C628 307 aa12.12□□□□□ -0.47
VPS29-207ENST00000549970 NPBWR1P48145 328 aa12.12□□□□□ -0.47
VPS29-207ENST00000549970 TFPI2P48307 235 aa12.12□□□□□ -0.47
VPS29-207ENST00000549970 APOC4P55056 127 aa12.12□□□□□ -0.47
VPS29-207ENST00000549970 RAB2BQ8WUD1 216 aa12.12□□□□□ -0.47
VPS29-207ENST00000549970 TEX13DA0A0J9YY54 714 aaPredicted RBP12.11□□□□□ -0.47
VPS29-207ENST00000549970 B3GALNT1O75752 331 aa12.11□□□□□ -0.47
VPS29-207ENST00000549970 AKAIN1P0CW23 69 aa12.11□□□□□ -0.47
VPS29-207ENST00000549970 RNASE2P10153 161 aaKnown RBP12.11□□□□□ -0.47
VPS29-207ENST00000549970 RPL35AP18077 110 aaKnown RBP12.11□□□□□ -0.47
VPS29-207ENST00000549970 SUB1P53999 127 aaKnown RBP eCLIP12.11□□□□□ -0.47
VPS29-207ENST00000549970 DEFB135Q30KP9 77 aa12.11□□□□□ -0.47
VPS29-207ENST00000549970 TOMM20LQ6UXN7 152 aa12.11□□□□□ -0.47
VPS29-207ENST00000549970 Q6ZRM9 215 aa12.11□□□□□ -0.47
VPS29-207ENST00000549970 OR4C16Q8NGL9 310 aa12.11□□□□□ -0.47
VPS29-207ENST00000549970 DYNC2LI1Q8TCX1 351 aa12.11□□□□□ -0.47
VPS29-207ENST00000549970 GINS3Q9BRX5 216 aa12.11□□□□□ -0.47
VPS29-207ENST00000549970 RTBDNQ9BSG5 229 aaPredicted RBP12.11□□□□□ -0.47
VPS29-207ENST00000549970 C6orf62Q9GZU0 229 aaPredicted RBP12.11□□□□□ -0.47
VPS29-207ENST00000549970 TMEM222Q9H0R3 208 aa12.11□□□□□ -0.47
VPS29-207ENST00000549970 NAA60Q9H7X0 242 aa12.11□□□□□ -0.47
VPS29-207ENST00000549970 CCDC59Q9P031 241 aaKnown RBP12.11□□□□□ -0.47
VPS29-207ENST00000549970 CORTO00230 105 aa12.1□□□□□ -0.47
VPS29-207ENST00000549970 CTDSPLO15194 276 aa12.1□□□□□ -0.47
VPS29-207ENST00000549970 ZNF600Q6ZNG1 722 aa12.1□□□□□ -0.47
VPS29-207ENST00000549970 APRG1Q8IVJ8 170 aa12.1□□□□□ -0.47
VPS29-207ENST00000549970 GBGT1Q8N5D6 347 aa12.1□□□□□ -0.47
VPS29-207ENST00000549970 LHFPL5Q8TAF8 219 aa12.1□□□□□ -0.47
VPS29-207ENST00000549970 GLYATL2Q8WU03 294 aa12.1□□□□□ -0.47
VPS29-207ENST00000549970 PUS1Q9Y606 427 aaKnown RBP eCLIP12.1□□□□□ -0.47
VPS29-207ENST00000549970 SPRY2O43597 315 aa12.09□□□□□ -0.47
VPS29-207ENST00000549970 CDS2O95674 445 aa12.09□□□□□ -0.47
VPS29-207ENST00000549970 OPRK1P41145 380 aa12.09□□□□□ -0.47
VPS29-207ENST00000549970 TMBIM6P55061 237 aa12.09□□□□□ -0.47
VPS29-207ENST00000549970 SURF2Q15527 256 aaPredicted RBP12.09□□□□□ -0.47
VPS29-207ENST00000549970 ZNF124Q15973 351 aa12.09□□□□□ -0.47
VPS29-207ENST00000549970 PVRIGQ6DKI7 326 aa12.09□□□□□ -0.47
VPS29-207ENST00000549970 Q6ZWC4 215 aa12.09□□□□□ -0.47
VPS29-207ENST00000549970 TCF24Q7RTU0 167 aa12.09□□□□□ -0.47
VPS29-207ENST00000549970 FAM219AQ8IW50 185 aa12.09□□□□□ -0.47
VPS29-207ENST00000549970 STPG3Q8N7X2 389 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms