RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-223	ENST00000544268	BAGE2	Q86Y30	109 aa		12.32	□□□□□ -0.44
CHFR-223	ENST00000544268		Q8TCH9	128 aa		12.32	□□□□□ -0.44
CHFR-223	ENST00000544268	QTRT1	Q9BXR0	403 aa	Known RBP	12.32	□□□□□ -0.44
CHFR-223	ENST00000544268	MRPS16	Q9Y3D3	137 aa	Known RBP	12.32	□□□□□ -0.44
CHFR-223	ENST00000544268	VSTM5	A8MXK1	200 aa		12.31	□□□□□ -0.44
CHFR-223	ENST00000544268	NPPC	P23582	126 aa		12.31	□□□□□ -0.44
CHFR-223	ENST00000544268	GRN	P28799	593 aa	Known RBP	12.31	□□□□□ -0.44
CHFR-223	ENST00000544268	PRDX2	P32119	198 aa		12.31	□□□□□ -0.44
CHFR-223	ENST00000544268	KLHDC1	Q8N7A1	406 aa		12.31	□□□□□ -0.44
CHFR-223	ENST00000544268	CACNA1B	Q00975	2339 aa		12.31	□□□□□ -0.44
CHFR-223	ENST00000544268	DSCAM	O60469	2012 aa		12.31	□□□□□ -0.44
CHFR-223	ENST00000544268	TRAV30	A0A087WSZ9	112 aa		12.31	□□□□□ -0.44
CHFR-223	ENST00000544268	TRAV3	A0A0B4J244	114 aa		12.31	□□□□□ -0.44
CHFR-223	ENST00000544268	PAGE4	O60829	102 aa		12.31	□□□□□ -0.44
CHFR-223	ENST00000544268	GPX1	P07203	203 aa		12.31	□□□□□ -0.44
CHFR-223	ENST00000544268	KRTDAP	P60985	99 aa		12.31	□□□□□ -0.44
CHFR-223	ENST00000544268	CFAP46	Q8IYW2	2715 aa		12.31	□□□□□ -0.44
CHFR-223	ENST00000544268	IGLV3-9	A0A075B6K5	115 aa		12.3	□□□□□ -0.44
CHFR-223	ENST00000544268	SPRY3	O43610	288 aa		12.3	□□□□□ -0.44
CHFR-223	ENST00000544268	FCGR3B	O75015	233 aa		12.3	□□□□□ -0.44
CHFR-223	ENST00000544268	RPS20	P60866	119 aa	Known RBP	12.3	□□□□□ -0.44
CHFR-223	ENST00000544268		Q6ZVH6	145 aa		12.3	□□□□□ -0.44
CHFR-223	ENST00000544268	H2BFWT	Q7Z2G1	175 aa		12.3	□□□□□ -0.44
CHFR-223	ENST00000544268	SMIM12	Q96EX1	92 aa		12.3	□□□□□ -0.44
CHFR-223	ENST00000544268	TET2	Q6N021	2002 aa	Predicted RBP	12.3	□□□□□ -0.44
CHFR-223	ENST00000544268	TACC2	O95359	2948 aa		12.3	□□□□□ -0.44
CHFR-223	ENST00000544268	TNFSF4	P23510	183 aa		12.3	□□□□□ -0.44
CHFR-223	ENST00000544268	SMIM21	Q3B7S5	101 aa		12.3	□□□□□ -0.44
CHFR-223	ENST00000544268	FBXL19-AS1	Q494R0	122 aa		12.3	□□□□□ -0.44
CHFR-223	ENST00000544268	NUP37	Q8NFH4	326 aa		12.3	□□□□□ -0.44
CHFR-223	ENST00000544268	SFRP2	Q96HF1	295 aa		12.3	□□□□□ -0.44
CHFR-223	ENST00000544268	MRPL18	Q9H0U6	180 aa	Known RBP	12.3	□□□□□ -0.44
CHFR-223	ENST00000544268	RNF114	Q9Y508	228 aa		12.3	□□□□□ -0.44
CHFR-223	ENST00000544268	ANKHD1	Q8IWZ3	2542 aa	Known RBP	12.29	□□□□□ -0.44
CHFR-223	ENST00000544268	RNF212B	A8MTL3	300 aa		12.29	□□□□□ -0.44
CHFR-223	ENST00000544268	HINT1	P49773	126 aa	Predicted RBP	12.29	□□□□□ -0.44
CHFR-223	ENST00000544268	EDDM3B	P56851	147 aa		12.29	□□□□□ -0.44
CHFR-223	ENST00000544268	OCIAD2	Q56VL3	154 aa		12.29	□□□□□ -0.44
CHFR-223	ENST00000544268	SSX8	Q7RTT4	187 aa		12.29	□□□□□ -0.44
CHFR-223	ENST00000544268	MOGAT3	Q86VF5	341 aa		12.29	□□□□□ -0.44
CHFR-223	ENST00000544268	GCSAM	Q8N6F7	178 aa		12.29	□□□□□ -0.44
CHFR-223	ENST00000544268	OR2V2	Q96R30	315 aa		12.29	□□□□□ -0.44
CHFR-223	ENST00000544268	CTNNBIP1	Q9NSA3	81 aa	Predicted RBP	12.29	□□□□□ -0.44
CHFR-223	ENST00000544268	SLC35D1	Q9NTN3	355 aa		12.29	□□□□□ -0.44
CHFR-223	ENST00000544268	CDC42EP3	Q9UKI2	254 aa		12.29	□□□□□ -0.44
CHFR-223	ENST00000544268	ARFGEF3	Q5TH69	2177 aa		12.29	□□□□□ -0.44
CHFR-223	ENST00000544268	SVEP1	Q4LDE5	3571 aa		12.29	□□□□□ -0.44
CHFR-223	ENST00000544268	TRAV9-1	A0A075B6T8	112 aa		12.29	□□□□□ -0.44
CHFR-223	ENST00000544268	C11orf94	C9JXX5	98 aa		12.29	□□□□□ -0.44
CHFR-223	ENST00000544268	TCTEX1D1	Q8N7M0	179 aa		12.29	□□□□□ -0.44
CHFR-223	ENST00000544268	OR10G9	Q8NGN4	311 aa		12.29	□□□□□ -0.44
CHFR-223	ENST00000544268	OR10G7	Q8NGN6	311 aa		12.29	□□□□□ -0.44
CHFR-223	ENST00000544268	RNASE6	Q93091	150 aa	Known RBP	12.29	□□□□□ -0.44
CHFR-223	ENST00000544268	GNG12	Q9UBI6	72 aa		12.29	□□□□□ -0.44
CHFR-223	ENST00000544268		J3KRW8	73 aa		12.28	□□□□□ -0.44
CHFR-223	ENST00000544268	PDE6D	O43924	150 aa		12.28	□□□□□ -0.44
CHFR-223	ENST00000544268	CBLN1	P23435	193 aa		12.28	□□□□□ -0.44
CHFR-223	ENST00000544268	TSPO	P30536	169 aa		12.28	□□□□□ -0.44
CHFR-223	ENST00000544268	LINC01560	Q8TB33	94 aa		12.28	□□□□□ -0.44
CHFR-223	ENST00000544268	PRR7	Q8TB68	274 aa		12.28	□□□□□ -0.44
CHFR-223	ENST00000544268	CHODL	Q9H9P2	273 aa		12.28	□□□□□ -0.44
CHFR-223	ENST00000544268	ZNRD1	Q9P1U0	126 aa		12.28	□□□□□ -0.44
CHFR-223	ENST00000544268	PKDREJ	Q9NTG1	2253 aa		12.28	□□□□□ -0.44
CHFR-223	ENST00000544268	SPTBN1	Q01082	2364 aa	Known RBP	12.28	□□□□□ -0.44
CHFR-223	ENST00000544268	ZNF253	O75346	499 aa		12.28	□□□□□ -0.44
CHFR-223	ENST00000544268	CLDN14	O95500	239 aa		12.28	□□□□□ -0.44
CHFR-223	ENST00000544268	MYOD1	P15172	320 aa		12.28	□□□□□ -0.44
CHFR-223	ENST00000544268	CATR1	Q13166	79 aa		12.28	□□□□□ -0.44
CHFR-223	ENST00000544268	OR5B3	Q8NH48	314 aa		12.28	□□□□□ -0.44
CHFR-223	ENST00000544268	FAM103A1	Q9BTL3	118 aa	Known RBP	12.28	□□□□□ -0.44
CHFR-223	ENST00000544268	MDFIC2	A0A1B0GVS7	189 aa		12.27	□□□□□ -0.44
CHFR-223	ENST00000544268	C15orf62	A8K5M9	175 aa		12.27	□□□□□ -0.44
CHFR-223	ENST00000544268	DUT	P33316	252 aa	Known RBP	12.27	□□□□□ -0.44
CHFR-223	ENST00000544268	UQCRFS1	P47985	274 aa		12.27	□□□□□ -0.44
CHFR-223	ENST00000544268	PRRX1	P54821	245 aa		12.27	□□□□□ -0.44
CHFR-223	ENST00000544268	SELENOV	P59797	346 aa		12.27	□□□□□ -0.44
CHFR-223	ENST00000544268	ARF6	P62330	175 aa		12.27	□□□□□ -0.44
CHFR-223	ENST00000544268	GNB1	P62873	340 aa		12.27	□□□□□ -0.44
CHFR-223	ENST00000544268	DEFB108B	Q8NET1	73 aa		12.27	□□□□□ -0.44
CHFR-223	ENST00000544268	NPCDR1	Q9BY65	106 aa		12.27	□□□□□ -0.44
CHFR-223	ENST00000544268	NRN1	Q9NPD7	142 aa		12.27	□□□□□ -0.44
CHFR-223	ENST00000544268	NGB	Q9NPG2	151 aa		12.27	□□□□□ -0.44
CHFR-223	ENST00000544268	TRAV38-1	A0A0B4J264	116 aa		12.27	□□□□□ -0.45
CHFR-223	ENST00000544268		F2Z2F3	143 aa		12.27	□□□□□ -0.45
CHFR-223	ENST00000544268		M0R1X1	148 aa		12.27	□□□□□ -0.45
CHFR-223	ENST00000544268	SLC25A17	O43808	307 aa		12.27	□□□□□ -0.45
CHFR-223	ENST00000544268	GPR12	P47775	334 aa		12.27	□□□□□ -0.45
CHFR-223	ENST00000544268	ADIPOQ	Q15848	244 aa		12.27	□□□□□ -0.45
CHFR-223	ENST00000544268	PNKD	Q8N490	385 aa		12.27	□□□□□ -0.45
CHFR-223	ENST00000544268		Q8N7P7	452 aa		12.27	□□□□□ -0.45
CHFR-223	ENST00000544268	OR10P1	Q8NGE3	313 aa		12.27	□□□□□ -0.45
CHFR-223	ENST00000544268	CST9L	Q9H4G1	147 aa		12.27	□□□□□ -0.45
CHFR-223	ENST00000544268	TBL2	Q9Y4P3	447 aa	Known RBP	12.27	□□□□□ -0.45
CHFR-223	ENST00000544268	TNC	P24821	2201 aa		12.26	□□□□□ -0.45
CHFR-223	ENST00000544268	IGHV2-26	A0A0B4J1V2	119 aa		12.26	□□□□□ -0.45
CHFR-223	ENST00000544268	TRAV34	A0A0B4J273	112 aa		12.26	□□□□□ -0.45
CHFR-223	ENST00000544268	IGHV1-69-2	A0A0G2JMI3	117 aa		12.26	□□□□□ -0.45
CHFR-223	ENST00000544268	FAM90A26	D6RGX4	464 aa		12.26	□□□□□ -0.45
CHFR-223	ENST00000544268	RBFOX2	O43251	390 aa	Known RBP eCLIP	12.26	□□□□□ -0.45
CHFR-223	ENST00000544268	RHOG	P84095	191 aa		12.26	□□□□□ -0.45

Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms