RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 IFNA10P01566 189 aa13.6□□□□□ -0.23
CLSTN3-210ENST00000540931 PF4P02776 101 aa13.6□□□□□ -0.23
CLSTN3-210ENST00000540931 RLN2P04090 185 aa13.6□□□□□ -0.23
CLSTN3-210ENST00000540931 HSPB1P04792 205 aaKnown RBP13.6□□□□□ -0.23
CLSTN3-210ENST00000540931 REG1AP05451 166 aa13.6□□□□□ -0.23
CLSTN3-210ENST00000540931 OR8U8P0C7N1 319 aa13.6□□□□□ -0.23
CLSTN3-210ENST00000540931 PVRIGQ6DKI7 326 aa13.6□□□□□ -0.23
CLSTN3-210ENST00000540931 NMES1Q9C002 83 aa13.6□□□□□ -0.23
CLSTN3-210ENST00000540931 PET100P0DJ07 73 aa13.59□□□□□ -0.23
CLSTN3-210ENST00000540931 SLC25A4P12235 298 aa13.59□□□□□ -0.23
CLSTN3-210ENST00000540931 SPNP16150 400 aa13.59□□□□□ -0.23
CLSTN3-210ENST00000540931 NPY1RP25929 384 aa13.59□□□□□ -0.23
CLSTN3-210ENST00000540931 FCGR2BP31994 310 aaPredicted RBP13.59□□□□□ -0.23
CLSTN3-210ENST00000540931 SRSF4Q08170 494 aaKnown RBP13.59□□□□□ -0.23
CLSTN3-210ENST00000540931 ZNF616Q08AN1 781 aa13.59□□□□□ -0.23
CLSTN3-210ENST00000540931 OR10C1Q96KK4 312 aa13.59□□□□□ -0.23
CLSTN3-210ENST00000540931 MED28Q9H204 178 aa13.59□□□□□ -0.23
CLSTN3-210ENST00000540931 PEF1Q9UBV8 284 aaKnown RBP13.59□□□□□ -0.23
CLSTN3-210ENST00000540931 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.58□□□□□ -0.24
CLSTN3-210ENST00000540931 A0A1W2PRX2 142 aa13.58□□□□□ -0.24
CLSTN3-210ENST00000540931 ADARB2-AS1A8MUL3 147 aa13.58□□□□□ -0.24
CLSTN3-210ENST00000540931 CCL24O00175 119 aa13.58□□□□□ -0.24
CLSTN3-210ENST00000540931 RNASE2P10153 161 aaKnown RBP13.58□□□□□ -0.24
CLSTN3-210ENST00000540931 NPBWR1P48145 328 aa13.58□□□□□ -0.24
CLSTN3-210ENST00000540931 SPSB3Q6PJ21 355 aa13.58□□□□□ -0.24
CLSTN3-210ENST00000540931 LCNL1Q6ZST4 164 aa13.58□□□□□ -0.24
CLSTN3-210ENST00000540931 OR1N2Q8NGR9 330 aa13.58□□□□□ -0.24
CLSTN3-210ENST00000540931 SMIM8Q96KF7 97 aa13.58□□□□□ -0.24
CLSTN3-210ENST00000540931 ALG5Q9Y673 324 aa13.58□□□□□ -0.24
CLSTN3-210ENST00000540931 TGP01266 2768 aa13.57□□□□□ -0.24
CLSTN3-210ENST00000540931 LINC01619G3V211 115 aa13.57□□□□□ -0.24
CLSTN3-210ENST00000540931 L7N2F9 121 aa13.57□□□□□ -0.24
CLSTN3-210ENST00000540931 GOSR2O14653 212 aa13.57□□□□□ -0.24
CLSTN3-210ENST00000540931 TSC22D2O75157 780 aa13.57□□□□□ -0.24
CLSTN3-210ENST00000540931 PRH1P02810 166 aa13.57□□□□□ -0.24
CLSTN3-210ENST00000540931 MFAP4P55083 255 aa13.57□□□□□ -0.24
CLSTN3-210ENST00000540931 VAMP2P63027 116 aa13.57□□□□□ -0.24
CLSTN3-210ENST00000540931 SPINK9Q5DT21 86 aa13.57□□□□□ -0.24
CLSTN3-210ENST00000540931 PRR31Q5SQ13 230 aa13.57□□□□□ -0.24
CLSTN3-210ENST00000540931 OR11H1Q8NG94 326 aa13.57□□□□□ -0.24
CLSTN3-210ENST00000540931 CACNG8Q8WXS5 425 aa13.57□□□□□ -0.24
CLSTN3-210ENST00000540931 MISP3Q96FF7 219 aa13.57□□□□□ -0.24
CLSTN3-210ENST00000540931 MCRIP2Q9BUT9 160 aaKnown RBP13.57□□□□□ -0.24
CLSTN3-210ENST00000540931 GPR61Q9BZJ8 451 aa13.57□□□□□ -0.24
CLSTN3-210ENST00000540931 C21orf62Q9NYP8 219 aa13.57□□□□□ -0.24
CLSTN3-210ENST00000540931 STRAPQ9Y3F4 350 aaKnown RBP13.57□□□□□ -0.24
CLSTN3-210ENST00000540931 TRAV30A0A087WSZ9 112 aa13.56□□□□□ -0.24
CLSTN3-210ENST00000540931 MPTX1A8MV57 137 aa13.56□□□□□ -0.24
CLSTN3-210ENST00000540931 NDUFB8O95169 186 aa13.56□□□□□ -0.24
CLSTN3-210ENST00000540931 SCGB1D2O95969 90 aa13.56□□□□□ -0.24
CLSTN3-210ENST00000540931 IFNA4P05014 189 aa13.56□□□□□ -0.24
CLSTN3-210ENST00000540931 GPX4P36969 197 aaPredicted RBP13.56□□□□□ -0.24
CLSTN3-210ENST00000540931 C8orf86Q6ZUL3 223 aa13.56□□□□□ -0.24
CLSTN3-210ENST00000540931 DCUN1D4Q92564 292 aa13.56□□□□□ -0.24
CLSTN3-210ENST00000540931 BSCL2Q96G97 398 aaPredicted RBP13.56□□□□□ -0.24
CLSTN3-210ENST00000540931 GNB4Q9HAV0 340 aa13.56□□□□□ -0.24
CLSTN3-210ENST00000540931 CCSO14618 274 aa13.55□□□□□ -0.24
CLSTN3-210ENST00000540931 GGCTO75223 188 aaKnown RBP13.55□□□□□ -0.24
CLSTN3-210ENST00000540931 NXPH3O95157 252 aa13.55□□□□□ -0.24
CLSTN3-210ENST00000540931 OPRK1P41145 380 aa13.55□□□□□ -0.24
CLSTN3-210ENST00000540931 FHL3Q13643 280 aa13.55□□□□□ -0.24
CLSTN3-210ENST00000540931 ZNF502Q8TBZ5 544 aa13.55□□□□□ -0.24
CLSTN3-210ENST00000540931 SCARB1Q8WTV0 552 aa13.55□□□□□ -0.24
CLSTN3-210ENST00000540931 PSENENQ9NZ42 101 aa13.55□□□□□ -0.24
CLSTN3-210ENST00000540931 MGAT4CQ9UBM8 478 aa13.55□□□□□ -0.24
CLSTN3-210ENST00000540931 I3L2K1 104 aa13.54□□□□□ -0.24
CLSTN3-210ENST00000540931 MT-CO2P00403 227 aa13.54□□□□□ -0.24
CLSTN3-210ENST00000540931 IGHV3-11P01762 117 aa13.54□□□□□ -0.24
CLSTN3-210ENST00000540931 MBPP02686 304 aaPredicted RBP13.54□□□□□ -0.24
CLSTN3-210ENST00000540931 POLR2GP62487 172 aaKnown RBP eCLIP13.54□□□□□ -0.24
CLSTN3-210ENST00000540931 FGL1Q08830 312 aa13.54□□□□□ -0.24
CLSTN3-210ENST00000540931 IL15RAQ13261 267 aa13.54□□□□□ -0.24
CLSTN3-210ENST00000540931 PINX1Q96BK5 328 aaKnown RBP13.54□□□□□ -0.24
CLSTN3-210ENST00000540931 MAGT1Q9H0U3 335 aa13.54□□□□□ -0.24
CLSTN3-210ENST00000540931 K7EIM0 57 aa13.53□□□□□ -0.24
CLSTN3-210ENST00000540931 NUPL2O15504 423 aaKnown RBP13.53□□□□□ -0.24
CLSTN3-210ENST00000540931 SSSCA1O60232 199 aa13.53□□□□□ -0.24
CLSTN3-210ENST00000540931 RRAS2P62070 204 aaPredicted RBP13.53□□□□□ -0.24
CLSTN3-210ENST00000540931 RELQ04864 619 aaPredicted RBP13.53□□□□□ -0.24
CLSTN3-210ENST00000540931 RPEL1Q2QD12 228 aa13.53□□□□□ -0.24
CLSTN3-210ENST00000540931 FAM106AQ4KMX7 169 aa13.53□□□□□ -0.24
CLSTN3-210ENST00000540931 RAX2Q96IS3 184 aa13.53□□□□□ -0.24
CLSTN3-210ENST00000540931 ZMAT5Q9UDW3 170 aaKnown RBP13.53□□□□□ -0.24
CLSTN3-210ENST00000540931 K7EPK0 472 aa13.52□□□□□ -0.25
CLSTN3-210ENST00000540931 GNG7O60262 68 aa13.52□□□□□ -0.25
CLSTN3-210ENST00000540931 CLEC3BP05452 202 aa13.52□□□□□ -0.25
CLSTN3-210ENST00000540931 FABP1P07148 127 aa13.52□□□□□ -0.25
CLSTN3-210ENST00000540931 IAPPP10997 89 aa13.52□□□□□ -0.25
CLSTN3-210ENST00000540931 CD33P20138 364 aa13.52□□□□□ -0.25
CLSTN3-210ENST00000540931 ARL3P36405 182 aa13.52□□□□□ -0.25
CLSTN3-210ENST00000540931 MFAP2P55001 183 aa13.52□□□□□ -0.25
CLSTN3-210ENST00000540931 Q56UQ5 140 aa13.52□□□□□ -0.25
CLSTN3-210ENST00000540931 SPANXN5Q5MJ07 72 aa13.52□□□□□ -0.25
CLSTN3-210ENST00000540931 ETV3LQ6ZN32 361 aa13.52□□□□□ -0.25
CLSTN3-210ENST00000540931 TMEM116Q8NCL8 245 aa13.52□□□□□ -0.25
CLSTN3-210ENST00000540931 WFDC9Q8NEX5 89 aa13.52□□□□□ -0.25
CLSTN3-210ENST00000540931 OR4X1Q8NH49 305 aa13.52□□□□□ -0.25
CLSTN3-210ENST00000540931 OR5B12Q96R08 314 aa13.52□□□□□ -0.25
CLSTN3-210ENST00000540931 DMRT1Q9Y5R6 373 aa13.52□□□□□ -0.25
CLSTN3-210ENST00000540931 E5RGE8 158 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms