RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 LINC01587Q99440 93 aa8.99□□□□□ -0.97
CLIP1-209ENST00000537178 ZNF703Q9H7S9 590 aaPredicted RBP8.99□□□□□ -0.97
CLIP1-209ENST00000537178 REV3LO60673 3130 aa8.99□□□□□ -0.97
CLIP1-209ENST00000537178 IGKV1D-42A0A075B6H8 117 aa8.98□□□□□ -0.97
CLIP1-209ENST00000537178 IGHV3OR16-10A0A075B7F0 116 aa8.98□□□□□ -0.97
CLIP1-209ENST00000537178 SNAI2O43623 268 aa8.98□□□□□ -0.97
CLIP1-209ENST00000537178 LINC00614P0C842 121 aa8.98□□□□□ -0.97
CLIP1-209ENST00000537178 IGFBP2P18065 325 aa8.98□□□□□ -0.97
CLIP1-209ENST00000537178 SAP25Q8TEE9 199 aa8.98□□□□□ -0.97
CLIP1-209ENST00000537178 NEU4Q8WWR8 484 aaPredicted RBP8.98□□□□□ -0.97
CLIP1-209ENST00000537178 TMEM54Q969K7 222 aa8.98□□□□□ -0.97
CLIP1-209ENST00000537178 CTHRC1Q96CG8 243 aa8.98□□□□□ -0.97
CLIP1-209ENST00000537178 CLDN16Q9Y5I7 305 aa8.98□□□□□ -0.97
CLIP1-209ENST00000537178 TRAV8-2A0A0B4J237 113 aa8.98□□□□□ -0.97
CLIP1-209ENST00000537178 COL4A3Q01955 1670 aa8.98□□□□□ -0.97
CLIP1-209ENST00000537178 PRR19A6NJB7 356 aa8.98□□□□□ -0.97
CLIP1-209ENST00000537178 SRP19P09132 144 aaKnown RBP8.98□□□□□ -0.97
CLIP1-209ENST00000537178 PCOLCEQ15113 449 aa8.98□□□□□ -0.97
CLIP1-209ENST00000537178 DMRTA1Q5VZB9 504 aa8.98□□□□□ -0.97
CLIP1-209ENST00000537178 ACP7Q6ZNF0 438 aa8.98□□□□□ -0.97
CLIP1-209ENST00000537178 ASCL2Q99929 193 aa8.98□□□□□ -0.97
CLIP1-209ENST00000537178 MYOD1P15172 320 aa8.98□□□□□ -0.97
CLIP1-209ENST00000537178 IFI27P40305 119 aaPredicted RBP8.98□□□□□ -0.97
CLIP1-209ENST00000537178 DERL1Q9BUN8 251 aa8.98□□□□□ -0.97
CLIP1-209ENST00000537178 MKI67P46013 3256 aaKnown RBP8.98□□□□□ -0.97
CLIP1-209ENST00000537178 ALPK2Q86TB3 2170 aa8.98□□□□□ -0.97
CLIP1-209ENST00000537178 IZUMO1RA6ND01 250 aa8.98□□□□□ -0.97
CLIP1-209ENST00000537178 EFNB1P98172 346 aa8.98□□□□□ -0.97
CLIP1-209ENST00000537178 ARPC1AQ92747 370 aa8.98□□□□□ -0.97
CLIP1-209ENST00000537178 A0A087WWC5 75 aa8.97□□□□□ -0.97
CLIP1-209ENST00000537178 FABP5P3A8MUU1 101 aa8.97□□□□□ -0.97
CLIP1-209ENST00000537178 GAS1P54826 345 aa8.97□□□□□ -0.97
CLIP1-209ENST00000537178 OR2K2Q8NGT1 345 aa8.97□□□□□ -0.97
CLIP1-209ENST00000537178 IMMP2LQ96T52 175 aa8.97□□□□□ -0.97
CLIP1-209ENST00000537178 YAE1D1Q9NRH1 226 aa8.97□□□□□ -0.97
CLIP1-209ENST00000537178 SLC25A15Q9Y619 301 aa8.97□□□□□ -0.97
CLIP1-209ENST00000537178 SCO2A0A1W2PP80 73 aa8.97□□□□□ -0.97
CLIP1-209ENST00000537178 NDUFS6O75380 124 aaKnown RBP8.97□□□□□ -0.97
CLIP1-209ENST00000537178 IGKV1D-33P01593 117 aa8.97□□□□□ -0.97
CLIP1-209ENST00000537178 IGKV1-33P01594 117 aa8.97□□□□□ -0.97
CLIP1-209ENST00000537178 SMIM10L1P0DMW3 83 aa8.97□□□□□ -0.97
CLIP1-209ENST00000537178 HTN3P15516 51 aa8.97□□□□□ -0.97
CLIP1-209ENST00000537178 MALP21145 153 aa8.97□□□□□ -0.97
CLIP1-209ENST00000537178 PLNP26678 52 aa8.97□□□□□ -0.97
CLIP1-209ENST00000537178 SMIM10Q96HG1 83 aa8.97□□□□□ -0.97
CLIP1-209ENST00000537178 TM2D1Q9BX74 207 aa8.97□□□□□ -0.97
CLIP1-209ENST00000537178 NXT2Q9NPJ8 142 aaKnown RBP8.97□□□□□ -0.97
CLIP1-209ENST00000537178 HEATR5BQ9P2D3 2071 aa8.97□□□□□ -0.97
CLIP1-209ENST00000537178 IGHV3-66A0A0C4DH42 116 aa8.97□□□□□ -0.97
CLIP1-209ENST00000537178 IGLV3-21P80748 117 aaPredicted RBP8.97□□□□□ -0.97
CLIP1-209ENST00000537178 OR10J3Q5JRS4 329 aa8.97□□□□□ -0.97
CLIP1-209ENST00000537178 SLC50A1Q9BRV3 221 aa8.97□□□□□ -0.97
CLIP1-209ENST00000537178 PEMTQ9UBM1 199 aa8.97□□□□□ -0.97
CLIP1-209ENST00000537178 KBTBD11-OT1A0A1B0GTJ5 212 aa8.96□□□□□ -0.97
CLIP1-209ENST00000537178 ZNF124Q15973 351 aa8.96□□□□□ -0.97
CLIP1-209ENST00000537178 ST6GALNAC6Q969X2 333 aa8.96□□□□□ -0.97
CLIP1-209ENST00000537178 SPSB2Q99619 263 aa8.96□□□□□ -0.97
CLIP1-209ENST00000537178 PAX2Q02962 417 aa8.96□□□□□ -0.98
CLIP1-209ENST00000537178 POLEQ07864 2286 aa8.96□□□□□ -0.98
CLIP1-209ENST00000537178 TMEM144Q7Z5S9 345 aa8.96□□□□□ -0.98
CLIP1-209ENST00000537178 RNF182Q8N6D2 247 aa8.96□□□□□ -0.98
CLIP1-209ENST00000537178 PILRBQ9UKJ0 227 aa8.96□□□□□ -0.98
CLIP1-209ENST00000537178 MUC21A0A0G2JKD1 596 aa8.96□□□□□ -0.98
CLIP1-209ENST00000537178 MUC21A0A140T8X8 626 aa8.96□□□□□ -0.98
CLIP1-209ENST00000537178 NDUFA3O95167 84 aa8.96□□□□□ -0.98
CLIP1-209ENST00000537178 MUC21Q5SSG8 566 aa8.96□□□□□ -0.98
CLIP1-209ENST00000537178 C1orf162Q8NEQ5 155 aaPredicted RBP8.96□□□□□ -0.98
CLIP1-209ENST00000537178 ST20Q9HBF5 79 aa8.96□□□□□ -0.98
CLIP1-209ENST00000537178 LAMTOR2Q9Y2Q5 125 aa8.96□□□□□ -0.98
CLIP1-209ENST00000537178 CKAP5Q14008 2032 aa8.96□□□□□ -0.98
CLIP1-209ENST00000537178 C17orf98A8MV24 154 aa8.96□□□□□ -0.98
CLIP1-209ENST00000537178 IGHV3-23P01764 117 aa8.96□□□□□ -0.98
CLIP1-209ENST00000537178 FAM90A1Q86YD7 464 aa8.96□□□□□ -0.98
CLIP1-209ENST00000537178 WBP1Q96G27 269 aa8.96□□□□□ -0.98
CLIP1-209ENST00000537178 WFDC6Q9BQY6 131 aa8.96□□□□□ -0.98
CLIP1-209ENST00000537178 Q9H3A6 140 aa8.96□□□□□ -0.98
CLIP1-209ENST00000537178 OTORQ9NRC9 128 aa8.96□□□□□ -0.98
CLIP1-209ENST00000537178 H3BUT2 72 aa8.95□□□□□ -0.98
CLIP1-209ENST00000537178 TGFAP01135 160 aa8.95□□□□□ -0.98
CLIP1-209ENST00000537178 PPBPP02775 128 aa8.95□□□□□ -0.98
CLIP1-209ENST00000537178 NRN1LQ496H8 165 aa8.95□□□□□ -0.98
CLIP1-209ENST00000537178 LINC01560Q8TB33 94 aa8.95□□□□□ -0.98
CLIP1-209ENST00000537178 ZNF257Q9Y2Q1 563 aa8.95□□□□□ -0.98
CLIP1-209ENST00000537178 ABCA4P78363 2273 aa8.95□□□□□ -0.98
CLIP1-209ENST00000537178 MSGN1A6NI15 193 aa8.95□□□□□ -0.98
CLIP1-209ENST00000537178 HIGD1CA8MV81 97 aa8.95□□□□□ -0.98
CLIP1-209ENST00000537178 DUSP14O95147 198 aaKnown RBP8.95□□□□□ -0.98
CLIP1-209ENST00000537178 RNASE4P34096 147 aaKnown RBP8.95□□□□□ -0.98
CLIP1-209ENST00000537178 TFF3Q07654 80 aa8.95□□□□□ -0.98
CLIP1-209ENST00000537178 TMEM42Q69YG0 159 aa8.95□□□□□ -0.98
CLIP1-209ENST00000537178 CLEC19AQ6UXS0 136 aa8.95□□□□□ -0.98
CLIP1-209ENST00000537178 CYSLTR1Q9Y271 337 aa8.95□□□□□ -0.98
CLIP1-209ENST00000537178 S4R3C0 116 aa8.95□□□□□ -0.98
CLIP1-209ENST00000537178 PGPEP1LA6NFU8 196 aa8.95□□□□□ -0.98
CLIP1-209ENST00000537178 CRPP02741 224 aa8.95□□□□□ -0.98
CLIP1-209ENST00000537178 CECR9P0C854 216 aa8.95□□□□□ -0.98
CLIP1-209ENST00000537178 ATP5G3P48201 142 aa8.95□□□□□ -0.98
CLIP1-209ENST00000537178 FAM71F2Q6NXP2 309 aa8.95□□□□□ -0.98
CLIP1-209ENST00000537178 FAM19A2Q8N3H0 131 aa8.95□□□□□ -0.98
CLIP1-209ENST00000537178 VKORC1Q9BQB6 163 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms