RNA–Protein interactions for RNA: ENST00000534556.1

USH1C-210, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 244 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-210ENST00000534556 TRBV7-1A0A0A6YYK4 115 aa3.78□□□□□ -1.8
USH1C-210ENST00000534556 A0A1B0GU03 582 aa3.78□□□□□ -1.8
USH1C-210ENST00000534556 ZNF320A2RRD8 509 aa3.78□□□□□ -1.8
USH1C-210ENST00000534556 CCDC160A6NGH7 325 aa3.78□□□□□ -1.8
USH1C-210ENST00000534556 A8MZ25 164 aa3.78□□□□□ -1.8
USH1C-210ENST00000534556 DISC1C4P0D8 188 aa3.78□□□□□ -1.8
USH1C-210ENST00000534556 INS-IGF2F8WCM5 200 aa3.78□□□□□ -1.8
USH1C-210ENST00000534556 ZNF701M0R085 212 aaPredicted RBP3.78□□□□□ -1.8
USH1C-210ENST00000534556 SCAF4O95104 1147 aaKnown RBP3.78□□□□□ -1.8
USH1C-210ENST00000534556 CCR6P51684 374 aa3.78□□□□□ -1.8
USH1C-210ENST00000534556 DHODHQ02127 395 aa3.78□□□□□ -1.8
USH1C-210ENST00000534556 ZNF124Q15973 351 aa3.78□□□□□ -1.8
USH1C-210ENST00000534556 HAGHQ16775 308 aa3.78□□□□□ -1.8
USH1C-210ENST00000534556 ANKRD55Q3KP44 614 aa3.78□□□□□ -1.8
USH1C-210ENST00000534556 PYDC2Q56P42 97 aa3.78□□□□□ -1.8
USH1C-210ENST00000534556 NMSQ5H8A3 153 aa3.78□□□□□ -1.8
USH1C-210ENST00000534556 FAM209BQ5JX69 171 aa3.78□□□□□ -1.8
USH1C-210ENST00000534556 TMEM268Q5VZI3 342 aa3.78□□□□□ -1.8
USH1C-210ENST00000534556 BTNL8Q6UX41 500 aa3.78□□□□□ -1.8
USH1C-210ENST00000534556 FAM219AQ8IW50 185 aa3.78□□□□□ -1.8
USH1C-210ENST00000534556 Q8N402 240 aa3.78□□□□□ -1.8
USH1C-210ENST00000534556 SLC35G3Q8N808 338 aa3.78□□□□□ -1.8
USH1C-210ENST00000534556 OR1P1Q8NH06 330 aa3.78□□□□□ -1.8
USH1C-210ENST00000534556 OR4A16Q8NH70 328 aa3.78□□□□□ -1.8
USH1C-210ENST00000534556 TMEM190Q8WZ59 177 aa3.78□□□□□ -1.8
USH1C-210ENST00000534556 RBPMSQ93062 196 aaKnown RBP3.78□□□□□ -1.8
USH1C-210ENST00000534556 MISP3Q96FF7 219 aa3.78□□□□□ -1.8
USH1C-210ENST00000534556 GALNT14Q96FL9 552 aa3.78□□□□□ -1.8
USH1C-210ENST00000534556 CXorf58Q96LI9 332 aa3.78□□□□□ -1.8
USH1C-210ENST00000534556 ZFAND3Q9H8U3 227 aa3.78□□□□□ -1.8
USH1C-210ENST00000534556 PLEKHA3Q9HB20 300 aa3.78□□□□□ -1.8
USH1C-210ENST00000534556 C21orf62Q9NYP8 219 aa3.78□□□□□ -1.8
USH1C-210ENST00000534556 COPZ2Q9P299 210 aa3.78□□□□□ -1.8
USH1C-210ENST00000534556 CACNG5Q9UF02 275 aa3.78□□□□□ -1.8
USH1C-210ENST00000534556 FLVCR2Q9UPI3 526 aa3.78□□□□□ -1.8
USH1C-210ENST00000534556 U3KQK5 164 aa3.78□□□□□ -1.8
USH1C-210ENST00000534556 FRAS1Q86XX4 4008 aa3.78□□□□□ -1.8
USH1C-210ENST00000534556 DNAH6Q9C0G6 4158 aa3.77□□□□□ -1.81
USH1C-210ENST00000534556 IGHV3OR16-13A0A075B7E8 117 aa3.77□□□□□ -1.81
USH1C-210ENST00000534556 IGHV3-74A0A0B4J1X5 117 aa3.77□□□□□ -1.81
USH1C-210ENST00000534556 MPTX1A8MV57 137 aa3.77□□□□□ -1.81
USH1C-210ENST00000534556 PLA2G10O15496 165 aa3.77□□□□□ -1.81
USH1C-210ENST00000534556 PITX3O75364 302 aa3.77□□□□□ -1.81
USH1C-210ENST00000534556 TMEM50AO95807 157 aa3.77□□□□□ -1.81
USH1C-210ENST00000534556 DHFRP00374 187 aa3.77□□□□□ -1.81
USH1C-210ENST00000534556 IGKV1-17P01599 117 aa3.77□□□□□ -1.81
USH1C-210ENST00000534556 NHLRC4P0CG21 123 aaPredicted RBP3.77□□□□□ -1.81
USH1C-210ENST00000534556 AKR1C4P17516 323 aa3.77□□□□□ -1.81
USH1C-210ENST00000534556 FCGR2BP31994 310 aaPredicted RBP3.77□□□□□ -1.81
USH1C-210ENST00000534556 AKR1C2P52895 323 aa3.77□□□□□ -1.81
USH1C-210ENST00000534556 CD81P60033 236 aa3.77□□□□□ -1.81
USH1C-210ENST00000534556 PPP1R1AQ13522 171 aa3.77□□□□□ -1.81
USH1C-210ENST00000534556 SURF2Q15527 256 aaPredicted RBP3.77□□□□□ -1.81
USH1C-210ENST00000534556 TRIM16LQ309B1 348 aa3.77□□□□□ -1.81
USH1C-210ENST00000534556 FAM90A2PQ658T7 463 aa3.77□□□□□ -1.81
USH1C-210ENST00000534556 THOC7Q6I9Y2 204 aaKnown RBP3.77□□□□□ -1.81
USH1C-210ENST00000534556 PLET1Q6UQ28 207 aa3.77□□□□□ -1.81
USH1C-210ENST00000534556 TOMM20LQ6UXN7 152 aa3.77□□□□□ -1.81
USH1C-210ENST00000534556 GSG1LQ6UXU4 331 aa3.77□□□□□ -1.81
USH1C-210ENST00000534556 HSD17B13Q7Z5P4 300 aaPredicted RBP3.77□□□□□ -1.81
USH1C-210ENST00000534556 FAM24BQ8N5W8 94 aa3.77□□□□□ -1.81
USH1C-210ENST00000534556 CCDC71LQ8N9Z2 235 aa3.77□□□□□ -1.81
USH1C-210ENST00000534556 UBAC2Q8NBM4 344 aa3.77□□□□□ -1.81
USH1C-210ENST00000534556 C15orf40Q8WUR7 153 aa3.77□□□□□ -1.81
USH1C-210ENST00000534556 PINX1Q96BK5 328 aaKnown RBP3.77□□□□□ -1.81
USH1C-210ENST00000534556 BSCL2Q96G97 398 aaPredicted RBP3.77□□□□□ -1.81
USH1C-210ENST00000534556 OR10C1Q96KK4 312 aa3.77□□□□□ -1.81
USH1C-210ENST00000534556 RCHY1Q96PM5 261 aa3.77□□□□□ -1.81
USH1C-210ENST00000534556 TSC22D3Q99576 134 aa3.77□□□□□ -1.81
USH1C-210ENST00000534556 PRRT1Q99946 306 aa3.77□□□□□ -1.81
USH1C-210ENST00000534556 FAM110AQ9BQ89 295 aa3.77□□□□□ -1.81
USH1C-210ENST00000534556 NEURL2Q9BR09 285 aa3.77□□□□□ -1.81
USH1C-210ENST00000534556 HIPK2Q9H2X6 1198 aa3.77□□□□□ -1.81
USH1C-210ENST00000534556 EDA2RQ9HAV5 297 aa3.77□□□□□ -1.81
USH1C-210ENST00000534556 MCUBQ9NWR8 336 aa3.77□□□□□ -1.81
USH1C-210ENST00000534556 FKBP11Q9NYL4 201 aa3.77□□□□□ -1.81
USH1C-210ENST00000534556 PEMTQ9UBM1 199 aa3.77□□□□□ -1.81
USH1C-210ENST00000534556 ZMAT5Q9UDW3 170 aaKnown RBP3.77□□□□□ -1.81
USH1C-210ENST00000534556 C14orf166Q9Y224 244 aaKnown RBP3.77□□□□□ -1.81
USH1C-210ENST00000534556 DNAH10Q8IVF4 4471 aa3.76□□□□□ -1.81
USH1C-210ENST00000534556 LINC00854A0A1B0GVQ3 168 aa3.76□□□□□ -1.81
USH1C-210ENST00000534556 OR11H12B2RN74 326 aa3.76□□□□□ -1.81
USH1C-210ENST00000534556 NDUFA4O00483 81 aa3.76□□□□□ -1.81
USH1C-210ENST00000534556 CHEK1O14757 476 aa3.76□□□□□ -1.81
USH1C-210ENST00000534556 NOL3O60936 208 aaKnown RBP3.76□□□□□ -1.81
USH1C-210ENST00000534556 IFNA17P01571 189 aa3.76□□□□□ -1.81
USH1C-210ENST00000534556 S100GP29377 79 aa3.76□□□□□ -1.81
USH1C-210ENST00000534556 MFAP4P55083 255 aa3.76□□□□□ -1.81
USH1C-210ENST00000534556 ELLP55199 621 aaPredicted RBP3.76□□□□□ -1.81
USH1C-210ENST00000534556 SPCS3P61009 180 aa3.76□□□□□ -1.81
USH1C-210ENST00000534556 EWSR1Q01844 656 aaKnown RBP eCLIP3.76□□□□□ -1.81
USH1C-210ENST00000534556 GUCA2BQ16661 112 aa3.76□□□□□ -1.81
USH1C-210ENST00000534556 TATDN3Q17R31 274 aa3.76□□□□□ -1.81
USH1C-210ENST00000534556 ODF3L2Q3SX64 289 aa3.76□□□□□ -1.81
USH1C-210ENST00000534556 TIGITQ495A1 244 aa3.76□□□□□ -1.81
USH1C-210ENST00000534556 FAM106AQ4KMX7 169 aa3.76□□□□□ -1.81
USH1C-210ENST00000534556 Q56UQ5 140 aa3.76□□□□□ -1.81
USH1C-210ENST00000534556 ZNF57Q68EA5 555 aaPredicted RBP3.76□□□□□ -1.81
USH1C-210ENST00000534556 LCN12Q6JVE5 192 aa3.76□□□□□ -1.81
USH1C-210ENST00000534556 STPG3Q8N7X2 389 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms