RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 SMPXQ9UHP9 88 aa8.38□□□□□ -1.07
VPS28-214ENST00000531032 IGHV7-4-1A0A0J9YVY3 117 aa8.37□□□□□ -1.07
VPS28-214ENST00000531032 CHEK1O14757 476 aa8.37□□□□□ -1.07
VPS28-214ENST00000531032 NUPL2O15504 423 aaKnown RBP8.37□□□□□ -1.07
VPS28-214ENST00000531032 CD3DP04234 171 aa8.37□□□□□ -1.07
VPS28-214ENST00000531032 RPL35AP18077 110 aaKnown RBP8.37□□□□□ -1.07
VPS28-214ENST00000531032 RPL5P46777 297 aaKnown RBP8.37□□□□□ -1.07
VPS28-214ENST00000531032 UCP3P55916 312 aa8.37□□□□□ -1.07
VPS28-214ENST00000531032 TAS2R19P59542 299 aa8.37□□□□□ -1.07
VPS28-214ENST00000531032 MRPS10P82664 201 aaKnown RBP8.37□□□□□ -1.07
VPS28-214ENST00000531032 RELQ04864 619 aaPredicted RBP8.37□□□□□ -1.07
VPS28-214ENST00000531032 SCGB2B2Q4G0G5 96 aa8.37□□□□□ -1.07
VPS28-214ENST00000531032 H2BFWTQ7Z2G1 175 aa8.37□□□□□ -1.07
VPS28-214ENST00000531032 ARRDC1Q8N5I2 433 aa8.37□□□□□ -1.07
VPS28-214ENST00000531032 TMEM217Q8N7C4 229 aa8.37□□□□□ -1.07
VPS28-214ENST00000531032 ZNF114Q8NC26 417 aa8.37□□□□□ -1.07
VPS28-214ENST00000531032 BCL7BQ9BQE9 202 aa8.37□□□□□ -1.07
VPS28-214ENST00000531032 RHPN1-AS1Q9BWJ2 59 aa8.37□□□□□ -1.07
VPS28-214ENST00000531032 C6orf62Q9GZU0 229 aaPredicted RBP8.37□□□□□ -1.07
VPS28-214ENST00000531032 CCDC59Q9P031 241 aaKnown RBP8.37□□□□□ -1.07
VPS28-214ENST00000531032 MTFP1Q9UDX5 166 aa8.37□□□□□ -1.07
VPS28-214ENST00000531032 KLK5Q9Y337 293 aaPredicted RBP8.37□□□□□ -1.07
VPS28-214ENST00000531032 I3L2K1 104 aa8.36□□□□□ -1.07
VPS28-214ENST00000531032 RAB3DO95716 219 aa8.36□□□□□ -1.07
VPS28-214ENST00000531032 AKR1C2P52895 323 aa8.36□□□□□ -1.07
VPS28-214ENST00000531032 IL18Q14116 193 aa8.36□□□□□ -1.07
VPS28-214ENST00000531032 APRG1Q8IVJ8 170 aa8.36□□□□□ -1.07
VPS28-214ENST00000531032 CCDC71LQ8N9Z2 235 aa8.36□□□□□ -1.07
VPS28-214ENST00000531032 TMEM116Q8NCL8 245 aa8.36□□□□□ -1.07
VPS28-214ENST00000531032 OR4A16Q8NH70 328 aa8.36□□□□□ -1.07
VPS28-214ENST00000531032 RNASE11Q8TAA1 199 aaKnown RBP8.36□□□□□ -1.07
VPS28-214ENST00000531032 MRGPRFQ96AM1 343 aa8.36□□□□□ -1.07
VPS28-214ENST00000531032 ZNF486Q96H40 463 aaPredicted RBP8.36□□□□□ -1.07
VPS28-214ENST00000531032 DIRAS2Q96HU8 199 aa8.36□□□□□ -1.07
VPS28-214ENST00000531032 SEC22AQ96IW7 307 aa8.36□□□□□ -1.07
VPS28-214ENST00000531032 TXN2Q99757 166 aa8.36□□□□□ -1.07
VPS28-214ENST00000531032 NXF2Q9GZY0 626 aaKnown RBP8.36□□□□□ -1.07
VPS28-214ENST00000531032 COPZ2Q9P299 210 aa8.36□□□□□ -1.07
VPS28-214ENST00000531032 FRAS1Q86XX4 4008 aa8.35□□□□□ -1.07
VPS28-214ENST00000531032 CCDC160A6NGH7 325 aa8.35□□□□□ -1.07
VPS28-214ENST00000531032 GABARAPH6UMI1 98 aa8.35□□□□□ -1.07
VPS28-214ENST00000531032 ATG12O94817 140 aa8.35□□□□□ -1.07
VPS28-214ENST00000531032 IGKV1-39P01597 117 aa8.35□□□□□ -1.07
VPS28-214ENST00000531032 IGKV1D-39P04432 117 aa8.35□□□□□ -1.07
VPS28-214ENST00000531032 PI3P19957 117 aa8.35□□□□□ -1.07
VPS28-214ENST00000531032 TMBIM6P55061 237 aa8.35□□□□□ -1.07
VPS28-214ENST00000531032 MFAP4P55083 255 aa8.35□□□□□ -1.07
VPS28-214ENST00000531032 CMC4P56277 68 aaPredicted RBP8.35□□□□□ -1.07
VPS28-214ENST00000531032 PIGPP57054 158 aa8.35□□□□□ -1.07
VPS28-214ENST00000531032 PRCDQ00LT1 54 aa8.35□□□□□ -1.07
VPS28-214ENST00000531032 MEF2DQ14814 521 aa8.35□□□□□ -1.07
VPS28-214ENST00000531032 ZNF124Q15973 351 aa8.35□□□□□ -1.07
VPS28-214ENST00000531032 TRIM16LQ309B1 348 aa8.35□□□□□ -1.07
VPS28-214ENST00000531032 FAM90A2PQ658T7 463 aa8.35□□□□□ -1.07
VPS28-214ENST00000531032 STEAP1BQ6NZ63 245 aa8.35□□□□□ -1.07
VPS28-214ENST00000531032 TMEM229BQ8NBD8 167 aa8.35□□□□□ -1.07
VPS28-214ENST00000531032 ZFAND1Q8TCF1 268 aa8.35□□□□□ -1.07
VPS28-214ENST00000531032 GATAD1Q8WUU5 269 aa8.35□□□□□ -1.07
VPS28-214ENST00000531032 MISP3Q96FF7 219 aa8.35□□□□□ -1.07
VPS28-214ENST00000531032 ABHD1Q96SE0 405 aa8.35□□□□□ -1.07
VPS28-214ENST00000531032 CSTL1Q9H114 145 aa8.35□□□□□ -1.07
VPS28-214ENST00000531032 MIXL1Q9H2W2 232 aa8.35□□□□□ -1.07
VPS28-214ENST00000531032 RABL2AQ9UBK7 228 aaPredicted RBP8.35□□□□□ -1.07
VPS28-214ENST00000531032 RABL2BQ9UNT1 228 aa8.35□□□□□ -1.07
VPS28-214ENST00000531032 C14orf166Q9Y224 244 aaKnown RBP8.35□□□□□ -1.07
VPS28-214ENST00000531032 KMT2AQ03164 3969 aa8.35□□□□□ -1.07
VPS28-214ENST00000531032 IGHV3-49A0A0A0MS15 119 aa8.34□□□□□ -1.07
VPS28-214ENST00000531032 TRAV14DV4A0A0A6YYC5 116 aa8.34□□□□□ -1.07
VPS28-214ENST00000531032 MPTX1A8MV57 137 aa8.34□□□□□ -1.07
VPS28-214ENST00000531032 DISC1C4P0D8 188 aa8.34□□□□□ -1.07
VPS28-214ENST00000531032 CTDSP2O14595 271 aa8.34□□□□□ -1.07
VPS28-214ENST00000531032 YIF1AO95070 293 aa8.34□□□□□ -1.07
VPS28-214ENST00000531032 MT-CO2P00403 227 aa8.34□□□□□ -1.07
VPS28-214ENST00000531032 RND3P61587 244 aa8.34□□□□□ -1.07
VPS28-214ENST00000531032 SSBP1Q04837 148 aaKnown RBP8.34□□□□□ -1.07
VPS28-214ENST00000531032 PHLDA1Q8WV24 401 aaPredicted RBP8.34□□□□□ -1.07
VPS28-214ENST00000531032 SMIM4Q8WVI0 70 aa8.34□□□□□ -1.07
VPS28-214ENST00000531032 PDCD10Q9BUL8 212 aa8.34□□□□□ -1.07
VPS28-214ENST00000531032 RBM38Q9H0Z9 239 aaKnown RBP8.34□□□□□ -1.07
VPS28-214ENST00000531032 GNG7O60262 68 aa8.33□□□□□ -1.08
VPS28-214ENST00000531032 IGHV3-48P01763 117 aa8.33□□□□□ -1.08
VPS28-214ENST00000531032 CD74P04233 296 aa8.33□□□□□ -1.08
VPS28-214ENST00000531032 CD5P06127 495 aa8.33□□□□□ -1.08
VPS28-214ENST00000531032 TFPI2P48307 235 aa8.33□□□□□ -1.08
VPS28-214ENST00000531032 HSPE1P61604 102 aaKnown RBP8.33□□□□□ -1.08
VPS28-214ENST00000531032 LGALS9CQ6DKI2 356 aa8.33□□□□□ -1.08
VPS28-214ENST00000531032 FAAP20Q6NZ36 180 aa8.33□□□□□ -1.08
VPS28-214ENST00000531032 LHFPL1Q86WI0 220 aa8.33□□□□□ -1.08
VPS28-214ENST00000531032 RPP25LQ8N5L8 163 aaKnown RBP8.33□□□□□ -1.08
VPS28-214ENST00000531032 SLC35G3Q8N808 338 aa8.33□□□□□ -1.08
VPS28-214ENST00000531032 OR4D10Q8NGI6 311 aa8.33□□□□□ -1.08
VPS28-214ENST00000531032 OR13C8Q8NGS7 320 aa8.33□□□□□ -1.08
VPS28-214ENST00000531032 DYNC2LI1Q8TCX1 351 aa8.33□□□□□ -1.08
VPS28-214ENST00000531032 C11orf68Q9H3H3 251 aaKnown RBP8.33□□□□□ -1.08
VPS28-214ENST00000531032 VSIRQ9H7M9 311 aa8.33□□□□□ -1.08
VPS28-214ENST00000531032 IGKV3-7A0A075B6H7 116 aa8.32□□□□□ -1.08
VPS28-214ENST00000531032 TEX13DA0A0J9YY54 714 aaPredicted RBP8.32□□□□□ -1.08
VPS28-214ENST00000531032 C3orf85A0A1B0GTC6 90 aa8.32□□□□□ -1.08
VPS28-214ENST00000531032 INS-IGF2F8WCM5 200 aa8.32□□□□□ -1.08
VPS28-214ENST00000531032 H3BMQ9 156 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms