RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 ATP5HO75947 161 aa2.1□□□□□ -2.07
CD44-223ENST00000526553 CRYGDP07320 174 aa2.1□□□□□ -2.07
CD44-223ENST00000526553 HIST1H1EP10412 219 aaKnown RBP2.1□□□□□ -2.07
CD44-223ENST00000526553 SLC25A16P16260 332 aa2.1□□□□□ -2.07
CD44-223ENST00000526553 ZNF22P17026 224 aaPredicted RBP2.1□□□□□ -2.07
CD44-223ENST00000526553 ZNF7P17097 686 aaPredicted RBP2.1□□□□□ -2.07
CD44-223ENST00000526553 CCR7P32248 378 aa2.1□□□□□ -2.07
CD44-223ENST00000526553 DAPP51397 102 aa2.1□□□□□ -2.07
CD44-223ENST00000526553 CTBP2P56545 445 aa2.1□□□□□ -2.07
CD44-223ENST00000526553 TSPEAR-AS2P59090 65 aa2.1□□□□□ -2.07
CD44-223ENST00000526553 ARPC4P59998 168 aa2.1□□□□□ -2.07
CD44-223ENST00000526553 KRTAP12-3P60328 96 aa2.1□□□□□ -2.07
CD44-223ENST00000526553 KRTAP12-4P60329 112 aa2.1□□□□□ -2.07
CD44-223ENST00000526553 NAA20P61599 178 aa2.1□□□□□ -2.07
CD44-223ENST00000526553 BASP1P80723 227 aaKnown RBP2.1□□□□□ -2.07
CD44-223ENST00000526553 DR1Q01658 176 aa2.1□□□□□ -2.07
CD44-223ENST00000526553 HTR4Q13639 388 aa2.1□□□□□ -2.07
CD44-223ENST00000526553 RSU1Q15404 277 aa2.1□□□□□ -2.07
CD44-223ENST00000526553 SBSNQ6UWP8 590 aa2.1□□□□□ -2.07
CD44-223ENST00000526553 C5orf46Q6UWT4 87 aa2.1□□□□□ -2.07
CD44-223ENST00000526553 BAP18Q8IXM2 172 aa2.1□□□□□ -2.07
CD44-223ENST00000526553 OR11H1Q8NG94 326 aa2.1□□□□□ -2.07
CD44-223ENST00000526553 ASB17Q8WXJ9 295 aa2.1□□□□□ -2.07
CD44-223ENST00000526553 MGLLQ99685 303 aa2.1□□□□□ -2.07
CD44-223ENST00000526553 TMEM109Q9BVC6 243 aa2.1□□□□□ -2.07
CD44-223ENST00000526553 TAS2R9Q9NYW1 312 aa2.1□□□□□ -2.07
CD44-223ENST00000526553 SNX12Q9UMY4 172 aa2.1□□□□□ -2.07
CD44-223ENST00000526553 PTPRBP23467 1997 aa2.1□□□□□ -2.07
CD44-223ENST00000526553 LAMA1P25391 3075 aa2.1□□□□□ -2.07
CD44-223ENST00000526553 ZZEF1O43149 2961 aa2.1□□□□□ -2.07
CD44-223ENST00000526553 MYOFQ9NZM1 2061 aa2.1□□□□□ -2.07
CD44-223ENST00000526553 MYO18BQ8IUG5 2567 aa2.09□□□□□ -2.07
CD44-223ENST00000526553 HELZ2Q9BYK8 2649 aaKnown RBP2.09□□□□□ -2.07
CD44-223ENST00000526553 MYH10P35580 1976 aa2.09□□□□□ -2.07
CD44-223ENST00000526553 CITO14578 2027 aa2.09□□□□□ -2.07
CD44-223ENST00000526553 A0A1B0GV50 99 aa2.09□□□□□ -2.07
CD44-223ENST00000526553 LOC102725191A0A1B0GVB3 256 aa2.09□□□□□ -2.07
CD44-223ENST00000526553 OR6C6A6NF89 314 aa2.09□□□□□ -2.07
CD44-223ENST00000526553 CCL16O15467 120 aa2.09□□□□□ -2.07
CD44-223ENST00000526553 SULT1B1O43704 296 aa2.09□□□□□ -2.07
CD44-223ENST00000526553 RPP14O95059 124 aaKnown RBP2.09□□□□□ -2.07
CD44-223ENST00000526553 APOMO95445 188 aa2.09□□□□□ -2.07
CD44-223ENST00000526553 ESDP10768 282 aa2.09□□□□□ -2.07
CD44-223ENST00000526553 CDKN2CP42773 168 aa2.09□□□□□ -2.07
CD44-223ENST00000526553 LPAR6P43657 344 aa2.09□□□□□ -2.07
CD44-223ENST00000526553 OMPP47874 163 aa2.09□□□□□ -2.07
CD44-223ENST00000526553 MARCKSL1P49006 195 aa2.09□□□□□ -2.07
CD44-223ENST00000526553 ZNF117Q03924 483 aa2.09□□□□□ -2.07
CD44-223ENST00000526553 ALX1Q15699 326 aa2.09□□□□□ -2.07
CD44-223ENST00000526553 TAF9Q16594 264 aa2.09□□□□□ -2.07
CD44-223ENST00000526553 TMEM176BQ3YBM2 270 aaPredicted RBP2.09□□□□□ -2.07
CD44-223ENST00000526553 SYPL2Q5VXT5 272 aa2.09□□□□□ -2.07
CD44-223ENST00000526553 OR10K2Q6IF99 312 aa2.09□□□□□ -2.07
CD44-223ENST00000526553 RASL11AQ6T310 242 aa2.09□□□□□ -2.07
CD44-223ENST00000526553 AMTNQ6UX39 209 aa2.09□□□□□ -2.07
CD44-223ENST00000526553 HIST2H3AQ71DI3 136 aa2.09□□□□□ -2.07
CD44-223ENST00000526553 ZNF550Q7Z398 422 aa2.09□□□□□ -2.07
CD44-223ENST00000526553 LRRC34Q8IZ02 419 aa2.09□□□□□ -2.07
CD44-223ENST00000526553 OR1M1Q8NGA1 313 aa2.09□□□□□ -2.07
CD44-223ENST00000526553 FGF13Q92913 245 aa2.09□□□□□ -2.07
CD44-223ENST00000526553 IMP4Q96G21 291 aaKnown RBP2.09□□□□□ -2.07
CD44-223ENST00000526553 CEP19Q96LK0 163 aa2.09□□□□□ -2.07
CD44-223ENST00000526553 PSTPIP2Q9H939 334 aa2.09□□□□□ -2.07
CD44-223ENST00000526553 MRPL16Q9NX20 251 aaKnown RBP2.09□□□□□ -2.07
CD44-223ENST00000526553 ZNF391Q9UJN7 358 aa2.09□□□□□ -2.07
CD44-223ENST00000526553 HEY1Q9Y5J3 304 aa2.09□□□□□ -2.07
CD44-223ENST00000526553 MAST4O15021 2626 aa2.09□□□□□ -2.08
CD44-223ENST00000526553 IGSF10Q6WRI0 2623 aa2.09□□□□□ -2.08
CD44-223ENST00000526553 ANK1P16157 1881 aa2.09□□□□□ -2.08
CD44-223ENST00000526553 MYO16Q9Y6X6 1858 aa2.09□□□□□ -2.08
CD44-223ENST00000526553 SDK2Q58EX2 2172 aa2.09□□□□□ -2.08
CD44-223ENST00000526553 TCHHQ07283 1943 aa2.09□□□□□ -2.08
CD44-223ENST00000526553 DENND4CQ5VZ89 1909 aa2.09□□□□□ -2.08
CD44-223ENST00000526553 DMXL2Q8TDJ6 3036 aa2.09□□□□□ -2.08
CD44-223ENST00000526553 KNTC1P50748 2209 aa2.09□□□□□ -2.08
CD44-223ENST00000526553 SPEGQ15772 3267 aa2.08□□□□□ -2.08
CD44-223ENST00000526553 A0A0D9SFI3 127 aa2.08□□□□□ -2.08
CD44-223ENST00000526553 A0A1B0GW54 56 aa2.08□□□□□ -2.08
CD44-223ENST00000526553 C17orf51A8MQB3 221 aa2.08□□□□□ -2.08
CD44-223ENST00000526553 G3V3Q6 166 aa2.08□□□□□ -2.08
CD44-223ENST00000526553 UBFD1O14562 309 aaKnown RBP2.08□□□□□ -2.08
CD44-223ENST00000526553 SNAPC5O75971 98 aa2.08□□□□□ -2.08
CD44-223ENST00000526553 NDUFB2O95178 105 aa2.08□□□□□ -2.08
CD44-223ENST00000526553 PRB1P04280 392 aa2.08□□□□□ -2.08
CD44-223ENST00000526553 IFNA16P05015 189 aa2.08□□□□□ -2.08
CD44-223ENST00000526553 HLA-DQB2P05538 268 aa2.08□□□□□ -2.08
CD44-223ENST00000526553 P0C880 135 aa2.08□□□□□ -2.08
CD44-223ENST00000526553 PHBP35232 272 aa2.08□□□□□ -2.08
CD44-223ENST00000526553 SULT1A1P50225 295 aa2.08□□□□□ -2.08
CD44-223ENST00000526553 ARPP19P56211 112 aa2.08□□□□□ -2.08
CD44-223ENST00000526553 TCL1AP56279 114 aa2.08□□□□□ -2.08
CD44-223ENST00000526553 MRPS15P82914 257 aaKnown RBP2.08□□□□□ -2.08
CD44-223ENST00000526553 FADDQ13158 208 aa2.08□□□□□ -2.08
CD44-223ENST00000526553 OR2F1Q13607 317 aa2.08□□□□□ -2.08
CD44-223ENST00000526553 SPOPLQ6IQ16 392 aa2.08□□□□□ -2.08
CD44-223ENST00000526553 C8orf74Q6P047 294 aa2.08□□□□□ -2.08
CD44-223ENST00000526553 C1orf174Q8IYL3 243 aa2.08□□□□□ -2.08
CD44-223ENST00000526553 DEFB124Q8NES8 71 aa2.08□□□□□ -2.08
CD44-223ENST00000526553 RASSF5Q8WWW0 418 aa2.08□□□□□ -2.08
CD44-223ENST00000526553 DIRAS2Q96HU8 199 aa2.08□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms