RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 ACOT6Q3I5F7 207 aaPredicted RBP0.89□□□□□ -2.27
CD44-215ENST00000525241 LPCAT4Q643R3 524 aa0.89□□□□□ -2.27
CD44-215ENST00000525241 SSX8Q7RTT4 187 aa0.89□□□□□ -2.27
CD44-215ENST00000525241 Q8N2B8 174 aa0.89□□□□□ -2.27
CD44-215ENST00000525241 RPP25LQ8N5L8 163 aaKnown RBP0.89□□□□□ -2.27
CD44-215ENST00000525241 CXorf21Q9HAI6 301 aa0.89□□□□□ -2.27
CD44-215ENST00000525241 GPR84Q9NQS5 396 aa0.89□□□□□ -2.27
CD44-215ENST00000525241 MRPL27Q9P0M9 148 aaKnown RBP0.89□□□□□ -2.27
CD44-215ENST00000525241 NAT8Q9UHE5 227 aa0.89□□□□□ -2.27
CD44-215ENST00000525241 GVINP1Q7Z2Y8 2422 aa0.89□□□□□ -2.27
CD44-215ENST00000525241 MYH2Q9UKX2 1941 aa0.89□□□□□ -2.27
CD44-215ENST00000525241 PIK3C2GO75747 1445 aa0.89□□□□□ -2.27
CD44-215ENST00000525241 NCOA1Q15788 1441 aa0.89□□□□□ -2.27
CD44-215ENST00000525241 ARFGEF3Q5TH69 2177 aa0.89□□□□□ -2.27
CD44-215ENST00000525241 MYH3P11055 1940 aa0.88□□□□□ -2.27
CD44-215ENST00000525241 ROBO3Q96MS0 1386 aa0.88□□□□□ -2.27
CD44-215ENST00000525241 MEGF8Q7Z7M0 2845 aa0.88□□□□□ -2.27
CD44-215ENST00000525241 MEIS3P1A6NDR6 274 aa0.88□□□□□ -2.27
CD44-215ENST00000525241 CLDN24A6NM45 220 aa0.88□□□□□ -2.27
CD44-215ENST00000525241 TRAPPC2LH3BP13 241 aa0.88□□□□□ -2.27
CD44-215ENST00000525241 IL9P15248 144 aa0.88□□□□□ -2.27
CD44-215ENST00000525241 CDKN2CP42773 168 aa0.88□□□□□ -2.27
CD44-215ENST00000525241 RPL30P62888 115 aaKnown RBP0.88□□□□□ -2.27
CD44-215ENST00000525241 CCL7P80098 99 aa0.88□□□□□ -2.27
CD44-215ENST00000525241 BATFQ16520 125 aa0.88□□□□□ -2.27
CD44-215ENST00000525241 C9orf64Q5T6V5 341 aa0.88□□□□□ -2.27
CD44-215ENST00000525241 C8orf74Q6P047 294 aa0.88□□□□□ -2.27
CD44-215ENST00000525241 SLC51BQ86UW2 128 aa0.88□□□□□ -2.27
CD44-215ENST00000525241 TMEM86AQ8N2M4 240 aa0.88□□□□□ -2.27
CD44-215ENST00000525241 CLDN22Q8N7P3 220 aa0.88□□□□□ -2.27
CD44-215ENST00000525241 OR51D1Q8NGF3 324 aa0.88□□□□□ -2.27
CD44-215ENST00000525241 KLK6Q92876 244 aa0.88□□□□□ -2.27
CD44-215ENST00000525241 IMP4Q96G21 291 aaKnown RBP0.88□□□□□ -2.27
CD44-215ENST00000525241 XAGE1AQ9HD64 81 aa0.88□□□□□ -2.27
CD44-215ENST00000525241 CISHQ9NSE2 258 aa0.88□□□□□ -2.27
CD44-215ENST00000525241 CMTM6Q9NX76 183 aa0.88□□□□□ -2.27
CD44-215ENST00000525241 TP73-AS1Q9UF72 201 aa0.88□□□□□ -2.27
CD44-215ENST00000525241 LRP5O75197 1615 aa0.88□□□□□ -2.27
CD44-215ENST00000525241 MYOFQ9NZM1 2061 aa0.88□□□□□ -2.27
CD44-215ENST00000525241 CEP250Q9BV73 2442 aa0.88□□□□□ -2.27
CD44-215ENST00000525241 UTP20O75691 2785 aaKnown RBP0.88□□□□□ -2.27
CD44-215ENST00000525241 CSMD1Q96PZ7 3565 aa0.88□□□□□ -2.27
CD44-215ENST00000525241 NSD1Q96L73 2696 aaPredicted RBP0.88□□□□□ -2.27
CD44-215ENST00000525241 RELNP78509 3460 aa0.88□□□□□ -2.27
CD44-215ENST00000525241 CCDC144AA2RUR9 1427 aa0.88□□□□□ -2.27
CD44-215ENST00000525241 ADGRL3Q9HAR2 1447 aa0.88□□□□□ -2.27
CD44-215ENST00000525241 DIDO1Q9BTC0 2240 aaKnown RBP0.88□□□□□ -2.27
CD44-215ENST00000525241 SPTAN1Q13813 2472 aaKnown RBP0.88□□□□□ -2.27
CD44-215ENST00000525241 MKI67P46013 3256 aaKnown RBP0.87□□□□□ -2.27
CD44-215ENST00000525241 NUP155O75694 1391 aa0.87□□□□□ -2.27
CD44-215ENST00000525241 EML6Q6ZMW3 1958 aa0.87□□□□□ -2.27
CD44-215ENST00000525241 PLXNA4Q9HCM2 1894 aa0.87□□□□□ -2.27
CD44-215ENST00000525241 A0A0J9YY10 115 aa0.87□□□□□ -2.27
CD44-215ENST00000525241 A0A1B0GX78 115 aa0.87□□□□□ -2.27
CD44-215ENST00000525241 SMIM9A6NGZ8 99 aa0.87□□□□□ -2.27
CD44-215ENST00000525241 IBA57-AS1B1ANH7 110 aa0.87□□□□□ -2.27
CD44-215ENST00000525241 LEPROTO15243 131 aa0.87□□□□□ -2.27
CD44-215ENST00000525241 HAND1O96004 215 aa0.87□□□□□ -2.27
CD44-215ENST00000525241 IGKV1-5P01602 117 aa0.87□□□□□ -2.27
CD44-215ENST00000525241 C1QAP02745 245 aa0.87□□□□□ -2.27
CD44-215ENST00000525241 CLPSP04118 112 aa0.87□□□□□ -2.27
CD44-215ENST00000525241 RPS17P08708 135 aaKnown RBP0.87□□□□□ -2.27
CD44-215ENST00000525241 TRGC1P0CF51 173 aa0.87□□□□□ -2.27
CD44-215ENST00000525241 CYBAP13498 195 aa0.87□□□□□ -2.27
CD44-215ENST00000525241 EVX1P49640 407 aa0.87□□□□□ -2.27
CD44-215ENST00000525241 SULT1A1P50225 295 aa0.87□□□□□ -2.27
CD44-215ENST00000525241 FADDQ13158 208 aa0.87□□□□□ -2.27
CD44-215ENST00000525241 ITGB3BPQ13352 177 aaPredicted RBP0.87□□□□□ -2.27
CD44-215ENST00000525241 SURF2Q15527 256 aaPredicted RBP0.87□□□□□ -2.27
CD44-215ENST00000525241 FAM27BQ5VT28 67 aa0.87□□□□□ -2.27
CD44-215ENST00000525241 RPS19BP1Q86WX3 136 aaKnown RBP0.87□□□□□ -2.27
CD44-215ENST00000525241 C12orf45Q8N5I9 185 aaPredicted RBP0.87□□□□□ -2.27
CD44-215ENST00000525241 ANKRD7Q92527 254 aa0.87□□□□□ -2.27
CD44-215ENST00000525241 ROPN1LQ96C74 230 aa0.87□□□□□ -2.27
CD44-215ENST00000525241 CNBD2Q96M20 576 aa0.87□□□□□ -2.27
CD44-215ENST00000525241 TSPAN32Q96QS1 320 aa0.87□□□□□ -2.27
CD44-215ENST00000525241 MRPS26Q9BYN8 205 aaKnown RBP0.87□□□□□ -2.27
CD44-215ENST00000525241 TLNRD1Q9H1K6 362 aa0.87□□□□□ -2.27
CD44-215ENST00000525241 SLC22A13Q9Y226 551 aa0.87□□□□□ -2.27
CD44-215ENST00000525241 ZDBF2Q9HCK1 2354 aa0.87□□□□□ -2.27
CD44-215ENST00000525241 CEP295Q9C0D2 2601 aa0.87□□□□□ -2.27
CD44-215ENST00000525241 TLN1Q9Y490 2541 aaKnown RBP0.87□□□□□ -2.27
CD44-215ENST00000525241 TENM2Q9NT68 2774 aa0.87□□□□□ -2.27
CD44-215ENST00000525241 SPEGQ15772 3267 aa0.87□□□□□ -2.27
CD44-215ENST00000525241 ZNF469Q96JG9 3925 aaPredicted RBP0.87□□□□□ -2.27
CD44-215ENST00000525241 AKAP13Q12802 2813 aa0.87□□□□□ -2.27
CD44-215ENST00000525241 TPRP12270 2363 aaKnown RBP0.86□□□□□ -2.27
CD44-215ENST00000525241 UNC80Q8N2C7 3258 aa0.86□□□□□ -2.27
CD44-215ENST00000525241 TEX15Q9BXT5 2789 aa0.86□□□□□ -2.27
CD44-215ENST00000525241 OBSL1O75147 1896 aa0.86□□□□□ -2.27
CD44-215ENST00000525241 RIMBP3CA6NJZ7 1639 aa0.86□□□□□ -2.27
CD44-215ENST00000525241 RIMBP3BA6NNM3 1639 aa0.86□□□□□ -2.27
CD44-215ENST00000525241 RIMBP3Q9UFD9 1639 aa0.86□□□□□ -2.27
CD44-215ENST00000525241 A0A087WUJ7 227 aa0.86□□□□□ -2.27
CD44-215ENST00000525241 PQLC2LA1A4F0 135 aa0.86□□□□□ -2.27
CD44-215ENST00000525241 FADS1O60427 444 aa0.86□□□□□ -2.27
CD44-215ENST00000525241 SRP19P09132 144 aaKnown RBP0.86□□□□□ -2.27
CD44-215ENST00000525241 MSNP26038 577 aaKnown RBP0.86□□□□□ -2.27
CD44-215ENST00000525241 SPCS3P61009 180 aa0.86□□□□□ -2.27
CD44-215ENST00000525241 SNRPD2P62316 118 aaKnown RBP0.86□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms