RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 NOXA1Q86UR1 476 aa10.97□□□□□ -0.65
NUP54-216ENST00000514901 DLX4Q92988 240 aaPredicted RBP10.97□□□□□ -0.65
NUP54-216ENST00000514901 HEYLQ9NQ87 328 aaPredicted RBP10.97□□□□□ -0.65
NUP54-216ENST00000514901 ZMAT5Q9UDW3 170 aaKnown RBP10.97□□□□□ -0.65
NUP54-216ENST00000514901 MFSD2BA6NFX1 497 aa10.96□□□□□ -0.65
NUP54-216ENST00000514901 G3V4G9 280 aa10.96□□□□□ -0.65
NUP54-216ENST00000514901 MED6O75586 246 aa10.96□□□□□ -0.65
NUP54-216ENST00000514901 TRBV12-3P01733 135 aa10.96□□□□□ -0.65
NUP54-216ENST00000514901 IL5P05113 134 aa10.96□□□□□ -0.65
NUP54-216ENST00000514901 CLEC3BP05452 202 aa10.96□□□□□ -0.65
NUP54-216ENST00000514901 RNASE2P10153 161 aaKnown RBP10.96□□□□□ -0.65
NUP54-216ENST00000514901 INSL3P51460 131 aa10.96□□□□□ -0.65
NUP54-216ENST00000514901 ATP5IP56385 69 aaPredicted RBP10.96□□□□□ -0.65
NUP54-216ENST00000514901 OXLD1Q5BKU9 147 aa10.96□□□□□ -0.65
NUP54-216ENST00000514901 C9orf66Q5T8R8 295 aa10.96□□□□□ -0.65
NUP54-216ENST00000514901 PVRIGQ6DKI7 326 aa10.96□□□□□ -0.65
NUP54-216ENST00000514901 CLEC19AQ6UXS0 136 aa10.96□□□□□ -0.65
NUP54-216ENST00000514901 ZNF502Q8TBZ5 544 aa10.96□□□□□ -0.65
NUP54-216ENST00000514901 ZNF431Q8TF32 576 aaPredicted RBP10.96□□□□□ -0.65
NUP54-216ENST00000514901 SCARB1Q8WTV0 552 aa10.96□□□□□ -0.65
NUP54-216ENST00000514901 MISP3Q96FF7 219 aa10.96□□□□□ -0.65
NUP54-216ENST00000514901 ELOVL1Q9BW60 279 aa10.96□□□□□ -0.65
NUP54-216ENST00000514901 C21orf62Q9NYP8 219 aa10.96□□□□□ -0.65
NUP54-216ENST00000514901 U3KQ87 197 aa10.96□□□□□ -0.65
NUP54-216ENST00000514901 SEC14L6B5MCN3 397 aa10.95□□□□□ -0.66
NUP54-216ENST00000514901 K7EIM0 57 aa10.95□□□□□ -0.66
NUP54-216ENST00000514901 BMPR1BO00238 502 aa10.95□□□□□ -0.66
NUP54-216ENST00000514901 WIPF1O43516 503 aa10.95□□□□□ -0.66
NUP54-216ENST00000514901 LY86O95711 162 aa10.95□□□□□ -0.66
NUP54-216ENST00000514901 IGHV3-23P01764 117 aa10.95□□□□□ -0.66
NUP54-216ENST00000514901 ARL3P36405 182 aa10.95□□□□□ -0.66
NUP54-216ENST00000514901 BSXQ3C1V8 233 aa10.95□□□□□ -0.66
NUP54-216ENST00000514901 KPRPQ5T749 579 aaPredicted RBP10.95□□□□□ -0.66
NUP54-216ENST00000514901 SPSB3Q6PJ21 355 aa10.95□□□□□ -0.66
NUP54-216ENST00000514901 PLET1Q6UQ28 207 aa10.95□□□□□ -0.66
NUP54-216ENST00000514901 NRARPQ7Z6K4 114 aa10.95□□□□□ -0.66
NUP54-216ENST00000514901 C1QL4Q86Z23 238 aa10.95□□□□□ -0.66
NUP54-216ENST00000514901 CCDC140Q96MF4 163 aa10.95□□□□□ -0.66
NUP54-216ENST00000514901 TXN2Q99757 166 aa10.95□□□□□ -0.66
NUP54-216ENST00000514901 I3L2K1 104 aa10.94□□□□□ -0.66
NUP54-216ENST00000514901 MT-CO2P00403 227 aa10.94□□□□□ -0.66
NUP54-216ENST00000514901 FCGR2BP31994 310 aaPredicted RBP10.94□□□□□ -0.66
NUP54-216ENST00000514901 MFAP4P55083 255 aa10.94□□□□□ -0.66
NUP54-216ENST00000514901 C2orf83Q53S99 150 aa10.94□□□□□ -0.66
NUP54-216ENST00000514901 GPHB5Q86YW7 130 aa10.94□□□□□ -0.66
NUP54-216ENST00000514901 SLC24A4Q8NFF2 622 aa10.94□□□□□ -0.66
NUP54-216ENST00000514901 OR52B4Q8NGK2 314 aa10.94□□□□□ -0.66
NUP54-216ENST00000514901 DTD1Q8TEA8 209 aa10.94□□□□□ -0.66
NUP54-216ENST00000514901 BSCL2Q96G97 398 aaPredicted RBP10.94□□□□□ -0.66
NUP54-216ENST00000514901 CIB3Q96Q77 187 aaPredicted RBP10.94□□□□□ -0.66
NUP54-216ENST00000514901 RBKSQ9H477 322 aa10.94□□□□□ -0.66
NUP54-216ENST00000514901 GPN1Q9HCN4 374 aaPredicted RBP10.94□□□□□ -0.66
NUP54-216ENST00000514901 S4R3C0 116 aa10.94□□□□□ -0.66
NUP54-216ENST00000514901 PPP5D1E7EU14 171 aa10.93□□□□□ -0.66
NUP54-216ENST00000514901 PRAF2O60831 178 aa10.93□□□□□ -0.66
NUP54-216ENST00000514901 ADAP1O75689 374 aa10.93□□□□□ -0.66
NUP54-216ENST00000514901 NXPH3O95157 252 aa10.93□□□□□ -0.66
NUP54-216ENST00000514901 SYNJ2BPP57105 145 aa10.93□□□□□ -0.66
NUP54-216ENST00000514901 BEAN1Q3B7T3 259 aa10.93□□□□□ -0.66
NUP54-216ENST00000514901 FAM106AQ4KMX7 169 aa10.93□□□□□ -0.66
NUP54-216ENST00000514901 ACSM6Q6P461 480 aa10.93□□□□□ -0.66
NUP54-216ENST00000514901 C12orf45Q8N5I9 185 aaPredicted RBP10.93□□□□□ -0.66
NUP54-216ENST00000514901 OR9G4Q8NGQ1 327 aa10.93□□□□□ -0.66
NUP54-216ENST00000514901 RNASEH2CQ8TDP1 164 aaKnown RBP10.93□□□□□ -0.66
NUP54-216ENST00000514901 OR4C12Q96R67 309 aa10.93□□□□□ -0.66
NUP54-216ENST00000514901 SEC22CQ9BRL7 303 aa10.93□□□□□ -0.66
NUP54-216ENST00000514901 MARVELD1Q9BSK0 173 aa10.93□□□□□ -0.66
NUP54-216ENST00000514901 PALMDQ9NP74 551 aa10.93□□□□□ -0.66
NUP54-216ENST00000514901 PEMTQ9UBM1 199 aa10.93□□□□□ -0.66
NUP54-216ENST00000514901 SORL1Q92673 2214 aa10.93□□□□□ -0.66
NUP54-216ENST00000514901 IGHV3-21A0A0B4J1V1 117 aa10.92□□□□□ -0.66
NUP54-216ENST00000514901 RPS10-NUDT3A0A1W2PQS6 291 aa10.92□□□□□ -0.66
NUP54-216ENST00000514901 INMT-MINDY4F8WBC2 141 aa10.92□□□□□ -0.66
NUP54-216ENST00000514901 LGALS9O00182 355 aa10.92□□□□□ -0.66
NUP54-216ENST00000514901 TGOLN2O43493 480 aa10.92□□□□□ -0.66
NUP54-216ENST00000514901 OR2C1O95371 312 aa10.92□□□□□ -0.66
NUP54-216ENST00000514901 IFNA10P01566 189 aa10.92□□□□□ -0.66
NUP54-216ENST00000514901 NPY1RP25929 384 aa10.92□□□□□ -0.66
NUP54-216ENST00000514901 GPR183P32249 361 aa10.92□□□□□ -0.66
NUP54-216ENST00000514901 NPBWR1P48145 328 aa10.92□□□□□ -0.66
NUP54-216ENST00000514901 RPP30P78346 268 aaKnown RBP10.92□□□□□ -0.66
NUP54-216ENST00000514901 ID3Q02535 119 aa10.92□□□□□ -0.66
NUP54-216ENST00000514901 Q56UQ5 140 aa10.92□□□□□ -0.66
NUP54-216ENST00000514901 PINX1Q96BK5 328 aaKnown RBP10.92□□□□□ -0.66
NUP54-216ENST00000514901 DNAH3Q8TD57 4116 aa10.91□□□□□ -0.66
NUP54-216ENST00000514901 OR2T8A6NH00 312 aa10.91□□□□□ -0.66
NUP54-216ENST00000514901 SNRPGP15A8MWD9 76 aa10.91□□□□□ -0.66
NUP54-216ENST00000514901 NUPL2O15504 423 aaKnown RBP10.91□□□□□ -0.66
NUP54-216ENST00000514901 SYNGR2O43760 224 aa10.91□□□□□ -0.66
NUP54-216ENST00000514901 SAP30O75446 220 aa10.91□□□□□ -0.66
NUP54-216ENST00000514901 NKX2-1P43699 371 aaPredicted RBP10.91□□□□□ -0.66
NUP54-216ENST00000514901 EGFEM1PQ0D2K5 195 aa10.91□□□□□ -0.66
NUP54-216ENST00000514901 IAH1Q2TAA2 248 aaPredicted RBP10.91□□□□□ -0.66
NUP54-216ENST00000514901 ETFRF1Q6IPR1 90 aa10.91□□□□□ -0.66
NUP54-216ENST00000514901 REC114Q7Z4M0 266 aa10.91□□□□□ -0.66
NUP54-216ENST00000514901 UXS1Q8NBZ7 420 aa10.91□□□□□ -0.66
NUP54-216ENST00000514901 SIGLEC8Q9NYZ4 499 aa10.91□□□□□ -0.66
NUP54-216ENST00000514901 MPTX1A8MV57 137 aa10.9□□□□□ -0.66
NUP54-216ENST00000514901 WRBO00258 174 aa10.9□□□□□ -0.66
NUP54-216ENST00000514901 SCGB2A1O75556 95 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 150.8 ms