RNA–Protein interactions for RNA: ENST00000514610.1

HMGCS1-207, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-207ENST00000514610 RPS20P60866 119 aaKnown RBP1.31□□□□□ -2.2
HMGCS1-207ENST00000514610 PSME3P61289 254 aa1.31□□□□□ -2.2
HMGCS1-207ENST00000514610 SPOPLQ6IQ16 392 aa1.31□□□□□ -2.2
HMGCS1-207ENST00000514610 RPS19BP1Q86WX3 136 aaKnown RBP1.31□□□□□ -2.2
HMGCS1-207ENST00000514610 BPIFA4PQ86YQ2 179 aa1.31□□□□□ -2.2
HMGCS1-207ENST00000514610 C20orf196Q8IYI0 205 aa1.31□□□□□ -2.2
HMGCS1-207ENST00000514610 LRRC25Q8N386 305 aaPredicted RBP1.31□□□□□ -2.2
HMGCS1-207ENST00000514610 C8orf76Q96K31 380 aa1.31□□□□□ -2.2
HMGCS1-207ENST00000514610 MED9Q9NWA0 146 aa1.31□□□□□ -2.2
HMGCS1-207ENST00000514610 TTC21AQ8NDW8 1320 aa1.31□□□□□ -2.2
HMGCS1-207ENST00000514610 MYO3BQ8WXR4 1341 aa1.31□□□□□ -2.2
HMGCS1-207ENST00000514610 ALPK2Q86TB3 2170 aa1.31□□□□□ -2.2
HMGCS1-207ENST00000514610 PLB1Q6P1J6 1458 aa1.31□□□□□ -2.2
HMGCS1-207ENST00000514610 DPRXA6NFQ7 191 aa1.3□□□□□ -2.2
HMGCS1-207ENST00000514610 TMEM212A6NML5 194 aa1.3□□□□□ -2.2
HMGCS1-207ENST00000514610 OMPP47874 163 aa1.3□□□□□ -2.2
HMGCS1-207ENST00000514610 RUNX1Q01196 453 aa1.3□□□□□ -2.2
HMGCS1-207ENST00000514610 ACOT6Q3I5F7 207 aaPredicted RBP1.3□□□□□ -2.2
HMGCS1-207ENST00000514610 RPL22L1Q6P5R6 122 aaKnown RBP1.3□□□□□ -2.2
HMGCS1-207ENST00000514610 CLVS1Q8IUQ0 354 aaPredicted RBP1.3□□□□□ -2.2
HMGCS1-207ENST00000514610 MNS1Q8NEH6 495 aa1.3□□□□□ -2.2
HMGCS1-207ENST00000514610 RASSF5Q8WWW0 418 aa1.3□□□□□ -2.2
HMGCS1-207ENST00000514610 DNAJC9Q8WXX5 260 aa1.3□□□□□ -2.2
HMGCS1-207ENST00000514610 DCUN1D1Q96GG9 259 aa1.3□□□□□ -2.2
HMGCS1-207ENST00000514610 COMMD5Q9GZQ3 224 aa1.3□□□□□ -2.2
HMGCS1-207ENST00000514610 VPS29Q9UBQ0 182 aa1.3□□□□□ -2.2
HMGCS1-207ENST00000514610 KIF1BO60333 1816 aa1.3□□□□□ -2.2
HMGCS1-207ENST00000514610 DLG5Q8TDM6 1919 aa1.3□□□□□ -2.2
HMGCS1-207ENST00000514610 CEP192Q8TEP8 1941 aa1.3□□□□□ -2.2
HMGCS1-207ENST00000514610 EXOC1LA0A1B0GW35 172 aa1.29□□□□□ -2.2
HMGCS1-207ENST00000514610 RPP14O95059 124 aaKnown RBP1.29□□□□□ -2.2
HMGCS1-207ENST00000514610 CRYZL1O95825 349 aa1.29□□□□□ -2.2
HMGCS1-207ENST00000514610 SHBGP04278 402 aa1.29□□□□□ -2.2
HMGCS1-207ENST00000514610 METTL15P1P0C7V9 234 aa1.29□□□□□ -2.2
HMGCS1-207ENST00000514610 G6PCP35575 357 aa1.29□□□□□ -2.2
HMGCS1-207ENST00000514610 ZNF846Q147U1 533 aa1.29□□□□□ -2.2
HMGCS1-207ENST00000514610 SPANXN3Q5MJ09 141 aa1.29□□□□□ -2.2
HMGCS1-207ENST00000514610 LPCAT3Q6P1A2 487 aa1.29□□□□□ -2.2
HMGCS1-207ENST00000514610 AAED1Q7RTV5 226 aa1.29□□□□□ -2.2
HMGCS1-207ENST00000514610 WFDC11Q8NEX6 87 aa1.29□□□□□ -2.2
HMGCS1-207ENST00000514610 C11orf40Q8WZ69 217 aa1.29□□□□□ -2.2
HMGCS1-207ENST00000514610 SCGB3A1Q96QR1 104 aa1.29□□□□□ -2.2
HMGCS1-207ENST00000514610 TSPAN32Q96QS1 320 aa1.29□□□□□ -2.2
HMGCS1-207ENST00000514610 TMEM147Q9BVK8 224 aa1.29□□□□□ -2.2
HMGCS1-207ENST00000514610 ULBP3Q9BZM4 244 aa1.29□□□□□ -2.2
HMGCS1-207ENST00000514610 YIPF3Q9GZM5 350 aa1.29□□□□□ -2.2
HMGCS1-207ENST00000514610 FAM236DA0A1B0GTK5 79 aa1.28□□□□□ -2.2
HMGCS1-207ENST00000514610 PQLC2LA1A4F0 135 aa1.28□□□□□ -2.2
HMGCS1-207ENST00000514610 OR4C46A6NHA9 309 aa1.28□□□□□ -2.2
HMGCS1-207ENST00000514610 SERPINA6P08185 405 aa1.28□□□□□ -2.2
HMGCS1-207ENST00000514610 FAM236CP0DP71 79 aa1.28□□□□□ -2.2
HMGCS1-207ENST00000514610 LSM6P62312 80 aaKnown RBP1.28□□□□□ -2.2
HMGCS1-207ENST00000514610 RANP62826 216 aaKnown RBP1.28□□□□□ -2.2
HMGCS1-207ENST00000514610 AESQ08117 197 aa1.28□□□□□ -2.2
HMGCS1-207ENST00000514610 C10orf55Q5SWW7 151 aa1.28□□□□□ -2.2
HMGCS1-207ENST00000514610 LCN15Q6UWW0 184 aa1.28□□□□□ -2.2
HMGCS1-207ENST00000514610 TMEM106AQ96A25 262 aa1.28□□□□□ -2.2
HMGCS1-207ENST00000514610 GINS4Q9BRT9 223 aa1.28□□□□□ -2.2
HMGCS1-207ENST00000514610 REG4Q9BYZ8 158 aa1.28□□□□□ -2.2
HMGCS1-207ENST00000514610 MRPL27Q9P0M9 148 aaKnown RBP1.28□□□□□ -2.2
HMGCS1-207ENST00000514610 TMEM56-RWDD3S4R434 201 aa1.28□□□□□ -2.2
HMGCS1-207ENST00000514610 NUP155O75694 1391 aa1.28□□□□□ -2.2
HMGCS1-207ENST00000514610 COL4A5P29400 1685 aa1.28□□□□□ -2.2
HMGCS1-207ENST00000514610 DENND4CQ5VZ89 1909 aa1.27□□□□□ -2.21
HMGCS1-207ENST00000514610 TNRC6BQ9UPQ9 1833 aaKnown RBP1.27□□□□□ -2.21
HMGCS1-207ENST00000514610 ROBO3Q96MS0 1386 aa1.27□□□□□ -2.21
HMGCS1-207ENST00000514610 IGKV1D-42A0A075B6H8 117 aa1.27□□□□□ -2.21
HMGCS1-207ENST00000514610 TRAV9-1A0A075B6T8 112 aa1.27□□□□□ -2.21
HMGCS1-207ENST00000514610 TRAV26-2A0A0B4J265 109 aa1.27□□□□□ -2.21
HMGCS1-207ENST00000514610 KPNA3O00505 521 aaPredicted RBP1.27□□□□□ -2.21
HMGCS1-207ENST00000514610 CNIH1O95406 144 aa1.27□□□□□ -2.21
HMGCS1-207ENST00000514610 TCRBP04435 133 aa1.27□□□□□ -2.21
HMGCS1-207ENST00000514610 CRYGAP11844 174 aa1.27□□□□□ -2.21
HMGCS1-207ENST00000514610 RNASE3P12724 160 aaKnown RBP1.27□□□□□ -2.21
HMGCS1-207ENST00000514610 CDKN2CP42773 168 aa1.27□□□□□ -2.21
HMGCS1-207ENST00000514610 CTAG1AP78358 180 aa1.27□□□□□ -2.21
HMGCS1-207ENST00000514610 STX5Q13190 355 aa1.27□□□□□ -2.21
HMGCS1-207ENST00000514610 OR13C4Q8NGS5 318 aa1.27□□□□□ -2.21
HMGCS1-207ENST00000514610 PFN4Q8NHR9 129 aa1.27□□□□□ -2.21
HMGCS1-207ENST00000514610 H1FXQ92522 213 aaKnown RBP1.27□□□□□ -2.21
HMGCS1-207ENST00000514610 TOMM6Q96B49 74 aa1.27□□□□□ -2.21
HMGCS1-207ENST00000514610 NIPSNAP1Q9BPW8 284 aa1.27□□□□□ -2.21
HMGCS1-207ENST00000514610 CKLFQ9UBR5 152 aa1.27□□□□□ -2.21
HMGCS1-207ENST00000514610 ZFYVE9O95405 1425 aa1.26□□□□□ -2.21
HMGCS1-207ENST00000514610 PIRO00625 290 aa1.26□□□□□ -2.21
HMGCS1-207ENST00000514610 HCRTO43612 131 aa1.26□□□□□ -2.21
HMGCS1-207ENST00000514610 FKBP2P26885 142 aaKnown RBP1.26□□□□□ -2.21
HMGCS1-207ENST00000514610 MIR17HGQ75NE6 70 aa1.26□□□□□ -2.21
HMGCS1-207ENST00000514610 TERB2Q8NHR7 220 aa1.26□□□□□ -2.21
HMGCS1-207ENST00000514610 CMSS1Q9BQ75 279 aaKnown RBP1.26□□□□□ -2.21
HMGCS1-207ENST00000514610 OR51V1Q9H2C8 321 aa1.26□□□□□ -2.21
HMGCS1-207ENST00000514610 CTNNBIP1Q9NSA3 81 aaPredicted RBP1.26□□□□□ -2.21
HMGCS1-207ENST00000514610 ROS1P08922 2347 aa1.26□□□□□ -2.21
HMGCS1-207ENST00000514610 SCN3AQ9NY46 2000 aa1.25□□□□□ -2.21
HMGCS1-207ENST00000514610 PIK3C2GO75747 1445 aa1.25□□□□□ -2.21
HMGCS1-207ENST00000514610 MYH10P35580 1976 aa1.25□□□□□ -2.21
HMGCS1-207ENST00000514610 OBSL1O75147 1896 aa1.25□□□□□ -2.21
HMGCS1-207ENST00000514610 SBF1O95248 1867 aa1.25□□□□□ -2.21
HMGCS1-207ENST00000514610 SMIM9A6NGZ8 99 aa1.25□□□□□ -2.21
HMGCS1-207ENST00000514610 TMEM114B3SHH9 223 aa1.25□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms