RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 PRNDQ9UKY0 176 aa7.55□□□□□ -1.2
LIMCH1-215ENST00000512632 DCHS1Q96JQ0 3298 aa7.55□□□□□ -1.2
LIMCH1-215ENST00000512632 CX3CL1P78423 397 aa7.55□□□□□ -1.2
LIMCH1-215ENST00000512632 DEFB109BQ30KR1 87 aa7.55□□□□□ -1.2
LIMCH1-215ENST00000512632 IBA57Q5T440 356 aaKnown RBP7.55□□□□□ -1.2
LIMCH1-215ENST00000512632 ZNF586Q9NXT0 402 aa7.55□□□□□ -1.2
LIMCH1-215ENST00000512632 PLAUP00749 431 aa7.55□□□□□ -1.2
LIMCH1-215ENST00000512632 CFHR2P36980 270 aa7.55□□□□□ -1.2
LIMCH1-215ENST00000512632 TNFAIP6P98066 277 aaPredicted RBP7.55□□□□□ -1.2
LIMCH1-215ENST00000512632 Q0VG73 95 aa7.55□□□□□ -1.2
LIMCH1-215ENST00000512632 PRR27Q6MZM9 219 aa7.55□□□□□ -1.2
LIMCH1-215ENST00000512632 ZNF474Q6S9Z5 364 aaPredicted RBP7.55□□□□□ -1.2
LIMCH1-215ENST00000512632 TMEM136Q6ZRR5 245 aa7.55□□□□□ -1.2
LIMCH1-215ENST00000512632 ATOH7Q8N100 152 aa7.55□□□□□ -1.2
LIMCH1-215ENST00000512632 GNB1LQ9BYB4 327 aa7.55□□□□□ -1.2
LIMCH1-215ENST00000512632 SAA1P0DJI8 122 aaPredicted RBP7.54□□□□□ -1.2
LIMCH1-215ENST00000512632 PYYP10082 97 aa7.54□□□□□ -1.2
LIMCH1-215ENST00000512632 CHRNB4P30926 498 aa7.54□□□□□ -1.2
LIMCH1-215ENST00000512632 COMPP49747 757 aaPredicted RBP7.54□□□□□ -1.2
LIMCH1-215ENST00000512632 PRCDQ00LT1 54 aa7.54□□□□□ -1.2
LIMCH1-215ENST00000512632 C22orf34Q6ZV56 151 aa7.54□□□□□ -1.2
LIMCH1-215ENST00000512632 C20orf144Q9BQM9 153 aa7.54□□□□□ -1.2
LIMCH1-215ENST00000512632 TMEM208Q9BTX3 173 aa7.54□□□□□ -1.2
LIMCH1-215ENST00000512632 SFXN3Q9BWM7 321 aa7.54□□□□□ -1.2
LIMCH1-215ENST00000512632 WNT10AQ9GZT5 417 aa7.54□□□□□ -1.2
LIMCH1-215ENST00000512632 RNF7Q9UBF6 113 aa7.54□□□□□ -1.2
LIMCH1-215ENST00000512632 BMPR1BO00238 502 aa7.54□□□□□ -1.2
LIMCH1-215ENST00000512632 LHBP01229 141 aa7.54□□□□□ -1.2
LIMCH1-215ENST00000512632 C8orf88P0DMB2 117 aa7.54□□□□□ -1.2
LIMCH1-215ENST00000512632 UBE2L3P68036 154 aaKnown RBP7.54□□□□□ -1.2
LIMCH1-215ENST00000512632 CCL8P80075 99 aa7.54□□□□□ -1.2
LIMCH1-215ENST00000512632 PLA2G2CQ5R387 149 aa7.54□□□□□ -1.2
LIMCH1-215ENST00000512632 C10orf55Q5SWW7 151 aa7.54□□□□□ -1.2
LIMCH1-215ENST00000512632 TRAV9-1A0A075B6T8 112 aa7.54□□□□□ -1.2
LIMCH1-215ENST00000512632 E7EUB6 86 aa7.54□□□□□ -1.2
LIMCH1-215ENST00000512632 GLRXP35754 106 aa7.54□□□□□ -1.2
LIMCH1-215ENST00000512632 SSBP2P81877 361 aaPredicted RBP7.54□□□□□ -1.2
LIMCH1-215ENST00000512632 SLC25A33Q9BSK2 321 aa7.54□□□□□ -1.2
LIMCH1-215ENST00000512632 ZNF355PQ9NSJ1 428 aa7.54□□□□□ -1.2
LIMCH1-215ENST00000512632 SLC25A10Q9UBX3 287 aaPredicted RBP7.54□□□□□ -1.2
LIMCH1-215ENST00000512632 LY96Q9Y6Y9 160 aa7.54□□□□□ -1.2
LIMCH1-215ENST00000512632 A0A1W2PS18 150 aa7.54□□□□□ -1.2
LIMCH1-215ENST00000512632 IGLV2-8P01709 118 aa7.54□□□□□ -1.2
LIMCH1-215ENST00000512632 RPLP1P05386 114 aaKnown RBP7.54□□□□□ -1.2
LIMCH1-215ENST00000512632 NPSP0C0P6 89 aa7.54□□□□□ -1.2
LIMCH1-215ENST00000512632 ESDP10768 282 aa7.54□□□□□ -1.2
LIMCH1-215ENST00000512632 ADTRPQ96IZ2 230 aa7.54□□□□□ -1.2
LIMCH1-215ENST00000512632 COMMD5Q9GZQ3 224 aa7.54□□□□□ -1.2
LIMCH1-215ENST00000512632 CHODLQ9H9P2 273 aa7.54□□□□□ -1.2
LIMCH1-215ENST00000512632 OSTCQ9NRP0 149 aa7.54□□□□□ -1.2
LIMCH1-215ENST00000512632 SPAARA0A1B0GVQ0 90 aa7.53□□□□□ -1.2
LIMCH1-215ENST00000512632 RNASE2P10153 161 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-215ENST00000512632 CCL3L1P16619 93 aa7.53□□□□□ -1.2
LIMCH1-215ENST00000512632 TAS2R45P59539 299 aa7.53□□□□□ -1.2
LIMCH1-215ENST00000512632 RPL19P84098 196 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-215ENST00000512632 RTL8BQ17RB0 113 aa7.53□□□□□ -1.2
LIMCH1-215ENST00000512632 HARBI1Q96MB7 349 aa7.53□□□□□ -1.2
LIMCH1-215ENST00000512632 FAM27E3Q08E93 113 aa7.53□□□□□ -1.2
LIMCH1-215ENST00000512632 MMDQ15546 238 aa7.53□□□□□ -1.2
LIMCH1-215ENST00000512632 LCN12Q6JVE5 192 aa7.53□□□□□ -1.2
LIMCH1-215ENST00000512632 ZNF439Q8NDP4 499 aa7.53□□□□□ -1.2
LIMCH1-215ENST00000512632 GAFA1Q96PS6 74 aa7.53□□□□□ -1.2
LIMCH1-215ENST00000512632 MRPL20Q9BYC9 149 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-215ENST00000512632 SPENQ96T58 3664 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-215ENST00000512632 IGHV1-46P01743 117 aa7.52□□□□□ -1.2
LIMCH1-215ENST00000512632 MFAP2P55001 183 aa7.52□□□□□ -1.2
LIMCH1-215ENST00000512632 CD69Q07108 199 aa7.52□□□□□ -1.2
LIMCH1-215ENST00000512632 NPIPB3Q92617 1050 aa7.52□□□□□ -1.2
LIMCH1-215ENST00000512632 ZNF331Q9NQX6 463 aaPredicted RBP7.52□□□□□ -1.2
LIMCH1-215ENST00000512632 RPUSD1Q9UJJ7 312 aaKnown RBP7.52□□□□□ -1.2
LIMCH1-215ENST00000512632 CDC42EP3Q9UKI2 254 aa7.52□□□□□ -1.2
LIMCH1-215ENST00000512632 LAMA5O15230 3695 aa7.52□□□□□ -1.21
LIMCH1-215ENST00000512632 A0A1B0GWJ7 208 aa7.52□□□□□ -1.21
LIMCH1-215ENST00000512632 M0R296 226 aa7.52□□□□□ -1.21
LIMCH1-215ENST00000512632 OR5G3P0C626 314 aa7.52□□□□□ -1.21
LIMCH1-215ENST00000512632 USF1P22415 310 aaPredicted RBP7.52□□□□□ -1.21
LIMCH1-215ENST00000512632 CAMPP49913 170 aa7.52□□□□□ -1.21
LIMCH1-215ENST00000512632 PPOXP50336 477 aa7.52□□□□□ -1.21
LIMCH1-215ENST00000512632 SELENOVP59797 346 aa7.52□□□□□ -1.21
LIMCH1-215ENST00000512632 WDR73Q6P4I2 378 aa7.52□□□□□ -1.21
LIMCH1-215ENST00000512632 ZNF436-AS1Q8NC38 126 aaPredicted RBP7.52□□□□□ -1.21
LIMCH1-215ENST00000512632 DNAJC4Q9NNZ3 241 aa7.52□□□□□ -1.21
LIMCH1-215ENST00000512632 RPH3ALQ9UNE2 315 aa7.52□□□□□ -1.21
LIMCH1-215ENST00000512632 ACACAQ13085 2346 aa7.52□□□□□ -1.21
LIMCH1-215ENST00000512632 M0QZK8 103 aa7.52□□□□□ -1.21
LIMCH1-215ENST00000512632 ISLRO14498 428 aa7.52□□□□□ -1.21
LIMCH1-215ENST00000512632 GPR6P46095 362 aaPredicted RBP7.52□□□□□ -1.21
LIMCH1-215ENST00000512632 SLAQ13239 276 aa7.52□□□□□ -1.21
LIMCH1-215ENST00000512632 SLC35E1Q96K37 410 aa7.52□□□□□ -1.21
LIMCH1-215ENST00000512632 GOLT1BQ9Y3E0 138 aa7.52□□□□□ -1.21
LIMCH1-215ENST00000512632 AMMECR1Q9Y4X0 333 aaPredicted RBP7.52□□□□□ -1.21
LIMCH1-215ENST00000512632 DMXL2Q8TDJ6 3036 aa7.52□□□□□ -1.21
LIMCH1-215ENST00000512632 TRBV9A0A0B4J1U6 114 aa7.52□□□□□ -1.21
LIMCH1-215ENST00000512632 DLEU1O43261 78 aa7.52□□□□□ -1.21
LIMCH1-215ENST00000512632 APCSP02743 223 aa7.52□□□□□ -1.21
LIMCH1-215ENST00000512632 MT-ND6P03923 174 aa7.52□□□□□ -1.21
LIMCH1-215ENST00000512632 REG1AP05451 166 aa7.52□□□□□ -1.21
LIMCH1-215ENST00000512632 C3orf79P0CE67 100 aa7.52□□□□□ -1.21
LIMCH1-215ENST00000512632 APELAP0DMC3 54 aa7.52□□□□□ -1.21
LIMCH1-215ENST00000512632 DIAPH2-AS1Q14236 149 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms