RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 ZNF780BQ9Y6R6 833 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 DIP2BQ9P265 1576 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 TOPAZ1Q8N9V7 1692 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 BAZ2AQ9UIF9 1905 aaKnown RBP1.26□□□□□ -2.21
NUP54-208ENST00000508604 XRN1Q8IZH2 1706 aaKnown RBP1.26□□□□□ -2.21
NUP54-208ENST00000508604 LRP5O75197 1615 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 COL22A1Q8NFW1 1626 aaPredicted RBP1.26□□□□□ -2.21
NUP54-208ENST00000508604 ADAMTSL3P82987 1691 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 GLI3P10071 1580 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 SAMD9LQ8IVG5 1584 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 MRC1P22897 1456 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 FXYD6-FXYD2A0A087WZ82 144 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 A0A087X0T9 212 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 LOC102724200A0A096LPH7 203 aaPredicted RBP1.26□□□□□ -2.21
NUP54-208ENST00000508604 SPAARA0A1B0GVQ0 90 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 LOC285095A0A1B0GVY8 99 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 DAPL1A0PJW8 107 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 C5orf49A4QMS7 147 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 OR51F1A6NGY5 319 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 TMEM212A6NML5 194 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 ZNF705FA8MVS1 300 aaPredicted RBP1.26□□□□□ -2.21
NUP54-208ENST00000508604 TMEM262E9PQX1 116 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 FNDC10F2Z333 226 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 F5H5P2 479 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 K7ENP7 123 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 K7EP34 96 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 M0R1X1 148 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 ZNF593O00488 134 aaPredicted RBP1.26□□□□□ -2.21
NUP54-208ENST00000508604 PIRO00625 290 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 XKRYO14609 159 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 TAX1BP3O14907 124 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 AGPAT2O15120 278 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 RER1O15258 196 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 GSTZ1O43708 216 aaPredicted RBP1.26□□□□□ -2.21
NUP54-208ENST00000508604 ENSAO43768 121 aaKnown RBP1.26□□□□□ -2.21
NUP54-208ENST00000508604 HYPMO75409 117 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 SCRG1O75711 98 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 PROSCO94903 275 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 CYB5AP00167 134 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 TNFP01375 233 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 HLA-DRB1P01911 266 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 TTRP02766 147 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 P04436 131 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 IGF1P05019 195 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 REG1AP05451 166 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 GPX1P07203 203 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 H2BFMP0C1H6 154 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 SPINK8P0C7L1 97 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 ZNF705DP0CH99 300 aaPredicted RBP1.26□□□□□ -2.21
NUP54-208ENST00000508604 ZNF705BP0CI00 300 aaPredicted RBP1.26□□□□□ -2.21
NUP54-208ENST00000508604 PIPP12273 146 aaPredicted RBP1.26□□□□□ -2.21
NUP54-208ENST00000508604 BCKDHAP12694 445 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 RPS4Y1P22090 263 aaKnown RBP1.26□□□□□ -2.21
NUP54-208ENST00000508604 PRTN3P24158 256 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 CNTFRP26992 372 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 CRYBB3P26998 211 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 BLVRBP30043 206 aaPredicted RBP1.26□□□□□ -2.21
NUP54-208ENST00000508604 BTCP35070 178 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 ARL2P36404 184 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 CA7P43166 264 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 ZNF121P58317 390 aaPredicted RBP1.26□□□□□ -2.21
NUP54-208ENST00000508604 TAS2R46P59540 309 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 YPEL3P61236 119 aaPredicted RBP1.26□□□□□ -2.21
NUP54-208ENST00000508604 GNG5P63218 68 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 SEC11AP67812 179 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 EWSR1Q01844 656 aaKnown RBP eCLIP1.26□□□□□ -2.21
NUP54-208ENST00000508604 TGFBR3Q03167 851 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 CD164Q04900 197 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 PPP1R1AQ13522 171 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 ADIRFQ15847 76 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 PMCHL1Q16048 86 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 CCL15Q16663 113 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 C4orf26Q17RF5 130 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 CLEC12BQ2HXU8 276 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 SLC25A35Q3KQZ1 300 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 TDRG1Q3Y452 100 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 TP53I3Q53FA7 332 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 LINC00483Q53H64 154 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 GLYATL3Q5SZD4 288 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 C1orf195Q5TG92 126 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 PVRIGQ6DKI7 326 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 SFXN4Q6P4A7 337 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 CXCL17Q6UXB2 119 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 Q6ZN92 141 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 TMEM91Q6ZNR0 172 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 Q6ZSR3 168 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 SMIM5Q71RC9 77 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 FAM19A1Q7Z5A9 133 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 MOB3BQ86TA1 216 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 C1orf174Q8IYL3 243 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 TOMM5Q8N4H5 51 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 TMEM86BQ8N661 226 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 TEX29Q8N6K0 151 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 ZFP41Q8N8Y5 198 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 ZDHHC22Q8N966 263 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 TMEM229BQ8NBD8 167 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 OR2T33Q8NG76 320 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 OR2M3Q8NG83 312 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 OR51A4Q8NGJ6 313 aa1.26□□□□□ -2.21
NUP54-208ENST00000508604 OR8S1Q8NH09 359 aa1.26□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms