RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 GPR6P46095 362 aaPredicted RBP14□□□□□ -0.17
SQSTM1-211ENST00000506690 OR4A47Q6IF82 309 aa14□□□□□ -0.17
SQSTM1-211ENST00000506690 DDB2Q92466 427 aa14□□□□□ -0.17
SQSTM1-211ENST00000506690 C19orf24Q9BVV8 132 aa14□□□□□ -0.17
SQSTM1-211ENST00000506690 CSTL1Q9H114 145 aa14□□□□□ -0.17
SQSTM1-211ENST00000506690 C12orf49Q9H741 205 aa14□□□□□ -0.17
SQSTM1-211ENST00000506690 CLCF1Q9UBD9 225 aa14□□□□□ -0.17
SQSTM1-211ENST00000506690 PCSK5Q92824 1860 aa13.99□□□□□ -0.17
SQSTM1-211ENST00000506690 J3QR06 171 aa13.99□□□□□ -0.17
SQSTM1-211ENST00000506690 REG1BP48304 166 aa13.99□□□□□ -0.17
SQSTM1-211ENST00000506690 MRPL49Q13405 166 aaKnown RBP13.99□□□□□ -0.17
SQSTM1-211ENST00000506690 SNRNP40Q96DI7 357 aaKnown RBP13.99□□□□□ -0.17
SQSTM1-211ENST00000506690 OBP2BQ9NPH6 170 aa13.99□□□□□ -0.17
SQSTM1-211ENST00000506690 GNG12Q9UBI6 72 aa13.99□□□□□ -0.17
SQSTM1-211ENST00000506690 JPT1Q9UK76 154 aa13.99□□□□□ -0.17
SQSTM1-211ENST00000506690 KIR2DS2P43631 304 aa13.99□□□□□ -0.17
SQSTM1-211ENST00000506690 BPIFB3P59826 476 aa13.99□□□□□ -0.17
SQSTM1-211ENST00000506690 WDR82Q6UXN9 313 aa13.99□□□□□ -0.17
SQSTM1-211ENST00000506690 SSBP4Q9BWG4 385 aaPredicted RBP13.99□□□□□ -0.17
SQSTM1-211ENST00000506690 B4GALT7Q9UBV7 327 aa13.99□□□□□ -0.17
SQSTM1-211ENST00000506690 PATE3B3GLJ2 98 aa13.98□□□□□ -0.17
SQSTM1-211ENST00000506690 TOX4O94842 621 aa13.98□□□□□ -0.17
SQSTM1-211ENST00000506690 MAGEA5P43359 124 aa13.98□□□□□ -0.17
SQSTM1-211ENST00000506690 ZNF134P52741 427 aa13.98□□□□□ -0.17
SQSTM1-211ENST00000506690 AMMECR1LQ6DCA0 310 aa13.98□□□□□ -0.17
SQSTM1-211ENST00000506690 C12orf54Q6X4T0 127 aa13.98□□□□□ -0.17
SQSTM1-211ENST00000506690 NUDT11Q96G61 164 aa13.98□□□□□ -0.17
SQSTM1-211ENST00000506690 LINC00479Q96M42 142 aa13.98□□□□□ -0.17
SQSTM1-211ENST00000506690 SLC25A33Q9BSK2 321 aa13.98□□□□□ -0.17
SQSTM1-211ENST00000506690 IFI27L2Q9H2X8 130 aa13.98□□□□□ -0.17
SQSTM1-211ENST00000506690 ENY2Q9NPA8 101 aa13.98□□□□□ -0.17
SQSTM1-211ENST00000506690 DNAJC13O75165 2243 aa13.98□□□□□ -0.17
SQSTM1-211ENST00000506690 MUC21A0A0G2JKD1 596 aa13.98□□□□□ -0.17
SQSTM1-211ENST00000506690 MUC21A0A140T8X8 626 aa13.98□□□□□ -0.17
SQSTM1-211ENST00000506690 C8orf88P0DMB2 117 aa13.98□□□□□ -0.17
SQSTM1-211ENST00000506690 GATA2P23769 480 aaPredicted RBP13.98□□□□□ -0.17
SQSTM1-211ENST00000506690 MUC21Q5SSG8 566 aa13.98□□□□□ -0.17
SQSTM1-211ENST00000506690 SLC25A34Q6PIV7 304 aa13.98□□□□□ -0.17
SQSTM1-211ENST00000506690 OR2T6Q8NHC8 308 aa13.98□□□□□ -0.17
SQSTM1-211ENST00000506690 DUSP13Q9UII6 198 aa13.98□□□□□ -0.17
SQSTM1-211ENST00000506690 A0A1B0GXF2 115 aa13.97□□□□□ -0.17
SQSTM1-211ENST00000506690 SYS1-DBNDD2H3BUS1 97 aa13.97□□□□□ -0.17
SQSTM1-211ENST00000506690 MPV17P39210 176 aa13.97□□□□□ -0.17
SQSTM1-211ENST00000506690 VWA1Q6PCB0 445 aa13.97□□□□□ -0.17
SQSTM1-211ENST00000506690 ATP5L2Q7Z4Y8 100 aa13.97□□□□□ -0.17
SQSTM1-211ENST00000506690 MOB3BQ86TA1 216 aa13.97□□□□□ -0.17
SQSTM1-211ENST00000506690 OR4S2Q8NH73 311 aa13.97□□□□□ -0.17
SQSTM1-211ENST00000506690 ZPBPQ9BS86 351 aa13.97□□□□□ -0.17
SQSTM1-211ENST00000506690 hDV102S1A0JD36 115 aa13.96□□□□□ -0.17
SQSTM1-211ENST00000506690 C3AR1Q16581 482 aa13.96□□□□□ -0.17
SQSTM1-211ENST00000506690 FAM162BQ5T6X4 162 aa13.96□□□□□ -0.17
SQSTM1-211ENST00000506690 C1orf229Q6ZS94 237 aaPredicted RBP13.96□□□□□ -0.17
SQSTM1-211ENST00000506690 CD177Q8N6Q3 437 aa13.96□□□□□ -0.17
SQSTM1-211ENST00000506690 HES7Q9BYE0 225 aa13.96□□□□□ -0.17
SQSTM1-211ENST00000506690 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.96□□□□□ -0.17
SQSTM1-211ENST00000506690 VWC2LB2RUY7 222 aa13.96□□□□□ -0.17
SQSTM1-211ENST00000506690 LOXL3P58215 753 aa13.96□□□□□ -0.17
SQSTM1-211ENST00000506690 EDDM3AQ14507 147 aa13.96□□□□□ -0.17
SQSTM1-211ENST00000506690 SMIM21Q3B7S5 101 aa13.96□□□□□ -0.17
SQSTM1-211ENST00000506690 KLF14Q8TD94 323 aaPredicted RBP13.96□□□□□ -0.17
SQSTM1-211ENST00000506690 FAM167A-AS1Q96KT0 104 aa13.96□□□□□ -0.17
SQSTM1-211ENST00000506690 CXXC4Q9H2H0 198 aa13.96□□□□□ -0.17
SQSTM1-211ENST00000506690 SH2D7A6NKC9 451 aaPredicted RBP13.95□□□□□ -0.18
SQSTM1-211ENST00000506690 HIGD1CA8MV81 97 aa13.95□□□□□ -0.18
SQSTM1-211ENST00000506690 HLA-DRB1P01911 266 aa13.95□□□□□ -0.18
SQSTM1-211ENST00000506690 CAMPP49913 170 aa13.95□□□□□ -0.18
SQSTM1-211ENST00000506690 C1orf210Q8IVY1 113 aa13.95□□□□□ -0.18
SQSTM1-211ENST00000506690 TTTY12Q9BZ98 90 aa13.95□□□□□ -0.18
SQSTM1-211ENST00000506690 IDI2-AS1Q9NZ38 188 aa13.95□□□□□ -0.18
SQSTM1-211ENST00000506690 NTN3O00634 580 aaPredicted RBP13.95□□□□□ -0.18
SQSTM1-211ENST00000506690 CD5LO43866 347 aa13.95□□□□□ -0.18
SQSTM1-211ENST00000506690 MYOD1P15172 320 aa13.95□□□□□ -0.18
SQSTM1-211ENST00000506690 PSG9Q00887 426 aa13.95□□□□□ -0.18
SQSTM1-211ENST00000506690 PRR27Q6MZM9 219 aa13.95□□□□□ -0.18
SQSTM1-211ENST00000506690 FAM71F2Q6NXP2 309 aa13.95□□□□□ -0.18
SQSTM1-211ENST00000506690 CHRDL1Q9BU40 450 aa13.95□□□□□ -0.18
SQSTM1-211ENST00000506690 SLC25A2Q9BXI2 301 aa13.95□□□□□ -0.18
SQSTM1-211ENST00000506690 SCRT2Q9NQ03 307 aa13.95□□□□□ -0.18
SQSTM1-211ENST00000506690 AMMECR1Q9Y4X0 333 aaPredicted RBP13.95□□□□□ -0.18
SQSTM1-211ENST00000506690 MUC3AQ02505 3323 aa13.95□□□□□ -0.18
SQSTM1-211ENST00000506690 FAM186AA6NE01 2351 aa13.95□□□□□ -0.18
SQSTM1-211ENST00000506690 VPS13AQ96RL7 3174 aa13.95□□□□□ -0.18
SQSTM1-211ENST00000506690 IGHV1-24A0A0C4DH33 117 aa13.94□□□□□ -0.18
SQSTM1-211ENST00000506690 GAGE12BA1L429 117 aa13.94□□□□□ -0.18
SQSTM1-211ENST00000506690 K7ERU9 68 aa13.94□□□□□ -0.18
SQSTM1-211ENST00000506690 CR1LQ2VPA4 569 aa13.94□□□□□ -0.18
SQSTM1-211ENST00000506690 LINC00173Q6ZV60 143 aa13.94□□□□□ -0.18
SQSTM1-211ENST00000506690 CHCHD1Q96BP2 118 aaKnown RBP13.94□□□□□ -0.18
SQSTM1-211ENST00000506690 MRPL32Q9BYC8 188 aaKnown RBP13.94□□□□□ -0.18
SQSTM1-211ENST00000506690 C7orf69Q9H7B7 122 aa13.94□□□□□ -0.18
SQSTM1-211ENST00000506690 IGHV3-13P01766 116 aa13.94□□□□□ -0.18
SQSTM1-211ENST00000506690 IGHV3-7P01780 117 aa13.94□□□□□ -0.18
SQSTM1-211ENST00000506690 ZNF835Q9Y2P0 537 aa13.94□□□□□ -0.18
SQSTM1-211ENST00000506690 PSMB11A5LHX3 300 aa13.93□□□□□ -0.18
SQSTM1-211ENST00000506690 UBE2L3P68036 154 aaKnown RBP13.93□□□□□ -0.18
SQSTM1-211ENST00000506690 MORN5Q5VZ52 161 aa13.93□□□□□ -0.18
SQSTM1-211ENST00000506690 TMEM251Q8N6I4 163 aa13.93□□□□□ -0.18
SQSTM1-211ENST00000506690 OR51B2Q9Y5P1 312 aa13.93□□□□□ -0.18
SQSTM1-211ENST00000506690 CORTO00230 105 aa13.93□□□□□ -0.18
SQSTM1-211ENST00000506690 F2RL2O00254 374 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 91.1 ms