RNA–Protein interactions for RNA: ENST00000495755.1

VPS52-221, Transcript of VPS52, GARP complex subunit, human

TSL 5

Gene VPS52, Length 453 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-221	ENST00000495755	DYNC2LI1	Q8TCX1	351 aa		5.38	□□□□□ -1.55
VPS52-221	ENST00000495755	RAB2B	Q8WUD1	216 aa		5.38	□□□□□ -1.55
VPS52-221	ENST00000495755	MISP3	Q96FF7	219 aa		5.38	□□□□□ -1.55
VPS52-221	ENST00000495755	OR10C1	Q96KK4	312 aa		5.38	□□□□□ -1.55
VPS52-221	ENST00000495755	SPAG8	Q99932	426 aa	Predicted RBP	5.38	□□□□□ -1.55
VPS52-221	ENST00000495755	BCL7B	Q9BQE9	202 aa		5.38	□□□□□ -1.55
VPS52-221	ENST00000495755	RTBDN	Q9BSG5	229 aa	Predicted RBP	5.38	□□□□□ -1.55
VPS52-221	ENST00000495755	C20orf24	Q9BUV8	137 aa		5.38	□□□□□ -1.55
VPS52-221	ENST00000495755	NXF2	Q9GZY0	626 aa	Known RBP	5.38	□□□□□ -1.55
VPS52-221	ENST00000495755	GAR1	Q9NY12	217 aa	Known RBP	5.38	□□□□□ -1.55
VPS52-221	ENST00000495755	SMPX	Q9UHP9	88 aa		5.38	□□□□□ -1.55
VPS52-221	ENST00000495755	IGHV3OR16-8	A0A075B7F1	116 aa		5.37	□□□□□ -1.55
VPS52-221	ENST00000495755	LOC102724200	A0A096LPH7	203 aa	Predicted RBP	5.37	□□□□□ -1.55
VPS52-221	ENST00000495755	CTDSPL	O15194	276 aa		5.37	□□□□□ -1.55
VPS52-221	ENST00000495755	NUPL2	O15504	423 aa	Known RBP	5.37	□□□□□ -1.55
VPS52-221	ENST00000495755	ST8SIA3	O43173	380 aa		5.37	□□□□□ -1.55
VPS52-221	ENST00000495755	ZNF207	O43670	478 aa	Known RBP	5.37	□□□□□ -1.55
VPS52-221	ENST00000495755	B3GALNT1	O75752	331 aa		5.37	□□□□□ -1.55
VPS52-221	ENST00000495755	ATG12	O94817	140 aa		5.37	□□□□□ -1.55
VPS52-221	ENST00000495755	CDS2	O95674	445 aa		5.37	□□□□□ -1.55
VPS52-221	ENST00000495755	MT-CO2	P00403	227 aa		5.37	□□□□□ -1.55
VPS52-221	ENST00000495755	IGHV3-48	P01763	117 aa		5.37	□□□□□ -1.55
VPS52-221	ENST00000495755	REL	Q04864	619 aa	Predicted RBP	5.37	□□□□□ -1.55
VPS52-221	ENST00000495755	MEF2D	Q14814	521 aa		5.37	□□□□□ -1.55
VPS52-221	ENST00000495755	SCGB2B2	Q4G0G5	96 aa		5.37	□□□□□ -1.55
VPS52-221	ENST00000495755	AARD	Q4LEZ3	155 aa		5.37	□□□□□ -1.55
VPS52-221	ENST00000495755	SPINK9	Q5DT21	86 aa		5.37	□□□□□ -1.55
VPS52-221	ENST00000495755	LAMTOR1	Q6IAA8	161 aa		5.37	□□□□□ -1.55
VPS52-221	ENST00000495755	FAAP20	Q6NZ36	180 aa		5.37	□□□□□ -1.55
VPS52-221	ENST00000495755		Q6ZRM9	215 aa		5.37	□□□□□ -1.55
VPS52-221	ENST00000495755	CCDC71L	Q8N9Z2	235 aa		5.37	□□□□□ -1.55
VPS52-221	ENST00000495755	SMIM4	Q8WVI0	70 aa		5.37	□□□□□ -1.55
VPS52-221	ENST00000495755	FAM110A	Q9BQ89	295 aa		5.37	□□□□□ -1.55
VPS52-221	ENST00000495755	SOST	Q9BQB4	213 aa		5.37	□□□□□ -1.55
VPS52-221	ENST00000495755	GGTLC1	Q9BX51	225 aa		5.37	□□□□□ -1.55
VPS52-221	ENST00000495755	CCDC59	Q9P031	241 aa	Known RBP	5.37	□□□□□ -1.55
VPS52-221	ENST00000495755	COPZ2	Q9P299	210 aa		5.37	□□□□□ -1.55
VPS52-221	ENST00000495755	RABL2A	Q9UBK7	228 aa	Predicted RBP	5.37	□□□□□ -1.55
VPS52-221	ENST00000495755	RABL2B	Q9UNT1	228 aa		5.37	□□□□□ -1.55
VPS52-221	ENST00000495755		A0A0G2JRQ6	117 aa		5.36	□□□□□ -1.55
VPS52-221	ENST00000495755	IGHV7-4-1	A0A0J9YVY3	117 aa		5.36	□□□□□ -1.55
VPS52-221	ENST00000495755	TEX13D	A0A0J9YY54	714 aa	Predicted RBP	5.36	□□□□□ -1.55
VPS52-221	ENST00000495755	LCE6A	A0A183	80 aa		5.36	□□□□□ -1.55
VPS52-221	ENST00000495755	DISC1	C4P0D8	188 aa		5.36	□□□□□ -1.55
VPS52-221	ENST00000495755	CHEK1	O14757	476 aa		5.36	□□□□□ -1.55
VPS52-221	ENST00000495755	GSTZ1	O43708	216 aa	Predicted RBP	5.36	□□□□□ -1.55
VPS52-221	ENST00000495755	TMEM50A	O95807	157 aa		5.36	□□□□□ -1.55
VPS52-221	ENST00000495755	IFNA17	P01571	189 aa		5.36	□□□□□ -1.55
VPS52-221	ENST00000495755	RNASE2	P10153	161 aa	Known RBP	5.36	□□□□□ -1.55
VPS52-221	ENST00000495755	SNCA	P37840	140 aa		5.36	□□□□□ -1.55
VPS52-221	ENST00000495755	ETV6	P41212	452 aa		5.36	□□□□□ -1.55
VPS52-221	ENST00000495755	RPL5	P46777	297 aa	Known RBP	5.36	□□□□□ -1.55
VPS52-221	ENST00000495755	AKR1C2	P52895	323 aa		5.36	□□□□□ -1.55
VPS52-221	ENST00000495755	SURF2	Q15527	256 aa	Predicted RBP	5.36	□□□□□ -1.55
VPS52-221	ENST00000495755	TRIM16L	Q309B1	348 aa		5.36	□□□□□ -1.55
VPS52-221	ENST00000495755	BSX	Q3C1V8	233 aa		5.36	□□□□□ -1.55
VPS52-221	ENST00000495755	ODF3L2	Q3SX64	289 aa		5.36	□□□□□ -1.55
VPS52-221	ENST00000495755	SLC35G3	Q8N808	338 aa		5.36	□□□□□ -1.55
VPS52-221	ENST00000495755	DUSP18	Q8NEJ0	188 aa		5.36	□□□□□ -1.55
VPS52-221	ENST00000495755	OR4C16	Q8NGL9	310 aa		5.36	□□□□□ -1.55
VPS52-221	ENST00000495755	LHFPL5	Q8TAF8	219 aa		5.36	□□□□□ -1.55
VPS52-221	ENST00000495755	GLYATL2	Q8WU03	294 aa		5.36	□□□□□ -1.55
VPS52-221	ENST00000495755	PINX1	Q96BK5	328 aa	Known RBP	5.36	□□□□□ -1.55
VPS52-221	ENST00000495755	RRNAD1	Q96FB5	475 aa	Known RBP	5.36	□□□□□ -1.55
VPS52-221	ENST00000495755	DIRAS2	Q96HU8	199 aa		5.36	□□□□□ -1.55
VPS52-221	ENST00000495755	RNF2	Q99496	336 aa		5.36	□□□□□ -1.55
VPS52-221	ENST00000495755	OVOL2	Q9BRP0	275 aa		5.36	□□□□□ -1.55
VPS52-221	ENST00000495755	RHPN1-AS1	Q9BWJ2	59 aa		5.36	□□□□□ -1.55
VPS52-221	ENST00000495755	SLIRP	Q9GZT3	109 aa	Known RBP	5.36	□□□□□ -1.55
VPS52-221	ENST00000495755	TMEM222	Q9H0R3	208 aa		5.36	□□□□□ -1.55
VPS52-221	ENST00000495755	NAA60	Q9H7X0	242 aa		5.36	□□□□□ -1.55
VPS52-221	ENST00000495755	GPR132	Q9UNW8	380 aa		5.36	□□□□□ -1.55
VPS52-221	ENST00000495755	BIRC6	Q9NR09	4857 aa		5.36	□□□□□ -1.55
VPS52-221	ENST00000495755	ALMS1	Q8TCU4	4167 aa		5.35	□□□□□ -1.55
VPS52-221	ENST00000495755	TRAV14DV4	A0A0A6YYC5	116 aa		5.35	□□□□□ -1.55
VPS52-221	ENST00000495755	ANKRD20A5P	A0PJZ0	165 aa		5.35	□□□□□ -1.55
VPS52-221	ENST00000495755	OR4C46	A6NHA9	309 aa		5.35	□□□□□ -1.55
VPS52-221	ENST00000495755	CRYM-AS1	A6NIL9	109 aa		5.35	□□□□□ -1.55
VPS52-221	ENST00000495755		H3BMQ9	156 aa		5.35	□□□□□ -1.55
VPS52-221	ENST00000495755	GNG7	O60262	68 aa		5.35	□□□□□ -1.55
VPS52-221	ENST00000495755	YIF1A	O95070	293 aa		5.35	□□□□□ -1.55
VPS52-221	ENST00000495755	OR5AC1	P0C628	307 aa		5.35	□□□□□ -1.55
VPS52-221	ENST00000495755	AKAIN1	P0CW23	69 aa		5.35	□□□□□ -1.55
VPS52-221	ENST00000495755	TNFSF8	P32971	234 aa		5.35	□□□□□ -1.55
VPS52-221	ENST00000495755	NPBWR1	P48145	328 aa		5.35	□□□□□ -1.55
VPS52-221	ENST00000495755	SUB1	P53999	127 aa	Known RBP eCLIP	5.35	□□□□□ -1.55
VPS52-221	ENST00000495755	SPCS3	P61009	180 aa		5.35	□□□□□ -1.55
VPS52-221	ENST00000495755	DHODH	Q02127	395 aa		5.35	□□□□□ -1.55
VPS52-221	ENST00000495755	IL18	Q14116	193 aa		5.35	□□□□□ -1.55
VPS52-221	ENST00000495755	FAM90A2P	Q658T7	463 aa		5.35	□□□□□ -1.55
VPS52-221	ENST00000495755	TOMM20L	Q6UXN7	152 aa		5.35	□□□□□ -1.55
VPS52-221	ENST00000495755	FAM219A	Q8IW50	185 aa		5.35	□□□□□ -1.55
VPS52-221	ENST00000495755	SELENOH	Q8IZQ5	122 aa	Known RBP	5.35	□□□□□ -1.55
VPS52-221	ENST00000495755	TMEM116	Q8NCL8	245 aa		5.35	□□□□□ -1.55
VPS52-221	ENST00000495755	OR52E5	Q8NH55	327 aa		5.35	□□□□□ -1.55
VPS52-221	ENST00000495755	IL17D	Q8TAD2	202 aa		5.35	□□□□□ -1.55
VPS52-221	ENST00000495755	PRRT1	Q99946	306 aa		5.35	□□□□□ -1.55
VPS52-221	ENST00000495755	PDCD10	Q9BUL8	212 aa		5.35	□□□□□ -1.55
VPS52-221	ENST00000495755	ZFAND3	Q9H8U3	227 aa		5.35	□□□□□ -1.55
VPS52-221	ENST00000495755	CTNNBIP1	Q9NSA3	81 aa	Predicted RBP	5.35	□□□□□ -1.55

Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms