RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 H3BRM9 83 aa16.02■□□□□ 0.15
COL27A1-207ENST00000494090 TMEM136Q6ZRR5 245 aa16.02■□□□□ 0.15
COL27A1-207ENST00000494090 MIR17HGQ75NE6 70 aa16.02■□□□□ 0.15
COL27A1-207ENST00000494090 GSN-AS1Q9NRJ2 163 aa16.02■□□□□ 0.15
COL27A1-207ENST00000494090 TMEM144Q7Z5S9 345 aa16.01■□□□□ 0.15
COL27A1-207ENST00000494090 YAE1D1Q9NRH1 226 aa16.01■□□□□ 0.15
COL27A1-207ENST00000494090 DICER1Q9UPY3 1922 aaKnown RBP16.01■□□□□ 0.15
COL27A1-207ENST00000494090 ALPK2Q86TB3 2170 aa16.01■□□□□ 0.15
COL27A1-207ENST00000494090 UPK2O00526 184 aa16.01■□□□□ 0.15
COL27A1-207ENST00000494090 IGKV3OR2-268A0A0C4DH90 116 aa16.01■□□□□ 0.15
COL27A1-207ENST00000494090 FOXA3P55318 350 aaPredicted RBP16.01■□□□□ 0.15
COL27A1-207ENST00000494090 WNT10AQ9GZT5 417 aa16.01■□□□□ 0.15
COL27A1-207ENST00000494090 M0R381 172 aa16.01■□□□□ 0.15
COL27A1-207ENST00000494090 CRYGSP22914 178 aa16.01■□□□□ 0.15
COL27A1-207ENST00000494090 CLEC19AQ6UXS0 136 aa16.01■□□□□ 0.15
COL27A1-207ENST00000494090 IMMP2LQ96T52 175 aa16.01■□□□□ 0.15
COL27A1-207ENST00000494090 TMEM133Q9H2Q1 129 aa16.01■□□□□ 0.15
COL27A1-207ENST00000494090 TBL2Q9Y4P3 447 aaKnown RBP16.01■□□□□ 0.15
COL27A1-207ENST00000494090 TNFRSF14Q92956 283 aa16■□□□□ 0.15
COL27A1-207ENST00000494090 TCF23Q7RTU1 214 aa16■□□□□ 0.15
COL27A1-207ENST00000494090 KCNS1Q96KK3 526 aa16■□□□□ 0.15
COL27A1-207ENST00000494090 SRSF7Q16629 238 aaKnown RBP eCLIP16■□□□□ 0.151e-7■□□□□ 10.1
COL27A1-207ENST00000494090 RPP21Q9H633 154 aaKnown RBP16■□□□□ 0.15
COL27A1-207ENST00000494090 A0A1B0GV90 55 aa16■□□□□ 0.15
COL27A1-207ENST00000494090 ZNF324BQ6AW86 544 aaPredicted RBP16■□□□□ 0.15
COL27A1-207ENST00000494090 IGHV3-23P01764 117 aa15.99■□□□□ 0.15
COL27A1-207ENST00000494090 DSCR9P59020 149 aa15.99■□□□□ 0.15
COL27A1-207ENST00000494090 C21orf62-AS1Q17RA5 79 aa15.99■□□□□ 0.15
COL27A1-207ENST00000494090 IGKV1D-8A0A087WSZ0 117 aa15.99■□□□□ 0.15
COL27A1-207ENST00000494090 IZUMO1RA6ND01 250 aa15.99■□□□□ 0.15
COL27A1-207ENST00000494090 THBDP07204 575 aa15.99■□□□□ 0.15
COL27A1-207ENST00000494090 TMEM190Q8WZ59 177 aa15.99■□□□□ 0.15
COL27A1-207ENST00000494090 OTORQ9NRC9 128 aa15.99■□□□□ 0.15
COL27A1-207ENST00000494090 DEPPQ9NTK1 212 aa15.99■□□□□ 0.15
COL27A1-207ENST00000494090 DUSP14O95147 198 aaKnown RBP15.99■□□□□ 0.15
COL27A1-207ENST00000494090 CTAG1AP78358 180 aa15.99■□□□□ 0.15
COL27A1-207ENST00000494090 TMEM170BQ5T4T1 132 aa15.98■□□□□ 0.15
COL27A1-207ENST00000494090 ASCL2Q99929 193 aa15.98■□□□□ 0.15
COL27A1-207ENST00000494090 SAA2-SAA4A0A096LPE2 208 aa15.98■□□□□ 0.15
COL27A1-207ENST00000494090 SAA1P0DJI8 122 aaPredicted RBP15.98■□□□□ 0.15
COL27A1-207ENST00000494090 SAA2P0DJI9 122 aaPredicted RBP15.98■□□□□ 0.15
COL27A1-207ENST00000494090 VDAC2P45880 294 aaPredicted RBP15.98■□□□□ 0.15
COL27A1-207ENST00000494090 IGHV3-49A0A0A0MS15 119 aa15.98■□□□□ 0.15
COL27A1-207ENST00000494090 C15orf61A6NNL5 157 aa15.98■□□□□ 0.15
COL27A1-207ENST00000494090 MORN2Q502X0 79 aa15.98■□□□□ 0.15
COL27A1-207ENST00000494090 COLCA1Q6ZS62 124 aa15.98■□□□□ 0.15
COL27A1-207ENST00000494090 LHFPL1Q86WI0 220 aa15.98■□□□□ 0.15
COL27A1-207ENST00000494090 OR13C6PQ8NH95 151 aa15.98■□□□□ 0.15
COL27A1-207ENST00000494090 WFDC1Q9HC57 220 aa15.98■□□□□ 0.15
COL27A1-207ENST00000494090 F11RQ9Y624 299 aaKnown RBP15.98■□□□□ 0.15
COL27A1-207ENST00000494090 PSMB11A5LHX3 300 aa15.98■□□□□ 0.15
COL27A1-207ENST00000494090 LDLRAD4O15165 306 aa15.98■□□□□ 0.15
COL27A1-207ENST00000494090 IL18BPO95998 194 aa15.98■□□□□ 0.15
COL27A1-207ENST00000494090 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP15.98■□□□□ 0.15
COL27A1-207ENST00000494090 NTN3O00634 580 aaPredicted RBP15.98■□□□□ 0.15
COL27A1-207ENST00000494090 EFNA2O43921 213 aa15.98■□□□□ 0.15
COL27A1-207ENST00000494090 LEPP41159 167 aa15.98■□□□□ 0.15
COL27A1-207ENST00000494090 LEMD1Q68G75 181 aa15.98■□□□□ 0.15
COL27A1-207ENST00000494090 NEUROG1Q92886 237 aa15.98■□□□□ 0.15
COL27A1-207ENST00000494090 LINC01587Q99440 93 aa15.98■□□□□ 0.15
COL27A1-207ENST00000494090 FAM90A9PA6NNJ1 464 aa15.97■□□□□ 0.15
COL27A1-207ENST00000494090 RNASE1P07998 156 aaKnown RBP15.97■□□□□ 0.15
COL27A1-207ENST00000494090 TMEM170AQ8WVE7 144 aa15.97■□□□□ 0.15
COL27A1-207ENST00000494090 CDKN1AP38936 164 aa15.97■□□□□ 0.15
COL27A1-207ENST00000494090 CCL20P78556 96 aa15.97■□□□□ 0.15
COL27A1-207ENST00000494090 FER1L6-AS1Q8NA97 138 aa15.97■□□□□ 0.15
COL27A1-207ENST00000494090 ZNF600Q6ZNG1 722 aa15.97■□□□□ 0.15
COL27A1-207ENST00000494090 Q9H3A6 140 aa15.96■□□□□ 0.15
COL27A1-207ENST00000494090 IGHV3-66A0A0C4DH42 116 aa15.96■□□□□ 0.15
COL27A1-207ENST00000494090 SCGB3A1Q96QR1 104 aa15.96■□□□□ 0.15
COL27A1-207ENST00000494090 RAMP3O60896 148 aa15.96■□□□□ 0.14
COL27A1-207ENST00000494090 GATA2P23769 480 aaPredicted RBP15.96■□□□□ 0.14
COL27A1-207ENST00000494090 GCSAMLQ5JQS6 135 aa15.96■□□□□ 0.14
COL27A1-207ENST00000494090 APOHP02749 345 aaPredicted RBP15.95■□□□□ 0.14
COL27A1-207ENST00000494090 NABP1Q96AH0 204 aa15.95■□□□□ 0.14
COL27A1-207ENST00000494090 IGKV1-12A0A0C4DH73 117 aa15.95■□□□□ 0.14
COL27A1-207ENST00000494090 IGKV1D-12P01611 117 aa15.95■□□□□ 0.14
COL27A1-207ENST00000494090 MBD3L1Q8WWY6 194 aa15.95■□□□□ 0.14
COL27A1-207ENST00000494090 TMEM160Q9NX00 188 aa15.95■□□□□ 0.14
COL27A1-207ENST00000494090 CCL3L1P16619 93 aa15.95■□□□□ 0.14
COL27A1-207ENST00000494090 TIMP3P35625 211 aa15.95■□□□□ 0.14
COL27A1-207ENST00000494090 TTC9CQ8N5M4 171 aa15.95■□□□□ 0.14
COL27A1-207ENST00000494090 FGFBP3Q8TAT2 258 aa15.95■□□□□ 0.14
COL27A1-207ENST00000494090 CYB5R2Q6BCY4 276 aa15.95■□□□□ 0.14
COL27A1-207ENST00000494090 METRNQ9UJH8 293 aa15.95■□□□□ 0.14
COL27A1-207ENST00000494090 S4R3C0 116 aa15.95■□□□□ 0.14
COL27A1-207ENST00000494090 FABP5P3A8MUU1 101 aa15.94■□□□□ 0.14
COL27A1-207ENST00000494090 GHRHP01286 108 aa15.94■□□□□ 0.14
COL27A1-207ENST00000494090 CD5P06127 495 aa15.94■□□□□ 0.14
COL27A1-207ENST00000494090 SPACA3Q8IXA5 215 aa15.94■□□□□ 0.14
COL27A1-207ENST00000494090 ARL6IP6Q8N6S5 226 aa15.94■□□□□ 0.14
COL27A1-207ENST00000494090 TRGV2A0A075B6R0 118 aa15.94■□□□□ 0.14
COL27A1-207ENST00000494090 CD55P08174 381 aa15.94■□□□□ 0.14
COL27A1-207ENST00000494090 SMIM13P0DJ93 91 aa15.94■□□□□ 0.14
COL27A1-207ENST00000494090 ORMDL3Q8N138 153 aa15.94■□□□□ 0.14
COL27A1-207ENST00000494090 TMEM167AQ8TBQ9 72 aa15.94■□□□□ 0.14
COL27A1-207ENST00000494090 C17orf82Q86X59 251 aaPredicted RBP15.94■□□□□ 0.14
COL27A1-207ENST00000494090 PEF1Q9UBV8 284 aaKnown RBP15.93■□□□□ 0.14
COL27A1-207ENST00000494090 PINLYPA6NC86 204 aa15.93■□□□□ 0.14
COL27A1-207ENST00000494090 CLPSP04118 112 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms