RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 OOSP2Q86WS3 158 aa0.65□□□□□ -2.31
SCN1A-206ENST00000491429 C1orf158Q8N1D5 194 aa0.65□□□□□ -2.31
SCN1A-206ENST00000491429 LRRC25Q8N386 305 aaPredicted RBP0.65□□□□□ -2.31
SCN1A-206ENST00000491429 ANKRD29Q8N6D5 301 aa0.65□□□□□ -2.31
SCN1A-206ENST00000491429 OR4E2Q8NGC2 313 aa0.65□□□□□ -2.31
SCN1A-206ENST00000491429 OR4D11Q8NGI4 311 aa0.65□□□□□ -2.31
SCN1A-206ENST00000491429 OR5A1Q8NGJ0 315 aa0.65□□□□□ -2.31
SCN1A-206ENST00000491429 IMP4Q96G21 291 aaKnown RBP0.65□□□□□ -2.31
SCN1A-206ENST00000491429 TMEM147Q9BVK8 224 aa0.65□□□□□ -2.31
SCN1A-206ENST00000491429 COMMD5Q9GZQ3 224 aa0.65□□□□□ -2.31
SCN1A-206ENST00000491429 FBXL12Q9NXK8 326 aa0.65□□□□□ -2.31
SCN1A-206ENST00000491429 DLG5Q8TDM6 1919 aa0.65□□□□□ -2.31
SCN1A-206ENST00000491429 BRWD1Q9NSI6 2320 aa0.65□□□□□ -2.31
SCN1A-206ENST00000491429 GPR98Q8WXG9 6306 aa0.65□□□□□ -2.31
SCN1A-206ENST00000491429 INTS1Q8N201 2190 aaKnown RBP0.64□□□□□ -2.31
SCN1A-206ENST00000491429 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP0.64□□□□□ -2.31
SCN1A-206ENST00000491429 TRAV1-1A0A0B4J248 108 aa0.64□□□□□ -2.31
SCN1A-206ENST00000491429 PQLC2LA1A4F0 135 aa0.64□□□□□ -2.31
SCN1A-206ENST00000491429 DPRXA6NFQ7 191 aa0.64□□□□□ -2.31
SCN1A-206ENST00000491429 FAAHO00519 579 aa0.64□□□□□ -2.31
SCN1A-206ENST00000491429 CD79AP11912 226 aa0.64□□□□□ -2.31
SCN1A-206ENST00000491429 SNRPD2P62316 118 aaKnown RBP0.64□□□□□ -2.31
SCN1A-206ENST00000491429 OR2F1Q13607 317 aa0.64□□□□□ -2.31
SCN1A-206ENST00000491429 KHDC3LQ587J8 217 aa0.64□□□□□ -2.31
SCN1A-206ENST00000491429 CCDC122Q5T0U0 273 aa0.64□□□□□ -2.31
SCN1A-206ENST00000491429 MIR17HGQ75NE6 70 aa0.64□□□□□ -2.31
SCN1A-206ENST00000491429 C20orf196Q8IYI0 205 aa0.64□□□□□ -2.31
SCN1A-206ENST00000491429 LINC00311Q8N616 119 aa0.64□□□□□ -2.31
SCN1A-206ENST00000491429 OR13C4Q8NGS5 318 aa0.64□□□□□ -2.31
SCN1A-206ENST00000491429 MRPL57Q9BQC6 102 aaKnown RBP0.64□□□□□ -2.31
SCN1A-206ENST00000491429 ULBP3Q9BZM4 244 aa0.64□□□□□ -2.31
SCN1A-206ENST00000491429 PRTFDC1Q9NRG1 225 aa0.64□□□□□ -2.31
SCN1A-206ENST00000491429 EIF4G1Q04637 1599 aaKnown RBP0.64□□□□□ -2.31
SCN1A-206ENST00000491429 ARFGEF3Q5TH69 2177 aa0.63□□□□□ -2.31
SCN1A-206ENST00000491429 HEATR5BQ9P2D3 2071 aa0.63□□□□□ -2.31
SCN1A-206ENST00000491429 TRAV9-1A0A075B6T8 112 aa0.63□□□□□ -2.31
SCN1A-206ENST00000491429 A0A087WX48 190 aa0.63□□□□□ -2.31
SCN1A-206ENST00000491429 A0A0D9SG52 128 aa0.63□□□□□ -2.31
SCN1A-206ENST00000491429 C2orf70A6NJV1 201 aa0.63□□□□□ -2.31
SCN1A-206ENST00000491429 AHSA1O95433 338 aa0.63□□□□□ -2.31
SCN1A-206ENST00000491429 HIST1H1TP22492 207 aaPredicted RBP0.63□□□□□ -2.31
SCN1A-206ENST00000491429 RPL5P46777 297 aaKnown RBP0.63□□□□□ -2.31
SCN1A-206ENST00000491429 NKX2-5P52952 324 aaPredicted RBP0.63□□□□□ -2.31
SCN1A-206ENST00000491429 RPS20P60866 119 aaKnown RBP0.63□□□□□ -2.31
SCN1A-206ENST00000491429 PSME3P61289 254 aa0.63□□□□□ -2.31
SCN1A-206ENST00000491429 MAGOHP61326 146 aaKnown RBP0.63□□□□□ -2.31
SCN1A-206ENST00000491429 HIST3H3Q16695 136 aa0.63□□□□□ -2.31
SCN1A-206ENST00000491429 RNASE10Q5GAN6 216 aaKnown RBP0.63□□□□□ -2.31
SCN1A-206ENST00000491429 SPOPLQ6IQ16 392 aa0.63□□□□□ -2.31
SCN1A-206ENST00000491429 LPCAT3Q6P1A2 487 aa0.63□□□□□ -2.31
SCN1A-206ENST00000491429 DEFB128Q7Z7B8 93 aa0.63□□□□□ -2.31
SCN1A-206ENST00000491429 PHF13Q86YI8 300 aaPredicted RBP0.63□□□□□ -2.31
SCN1A-206ENST00000491429 TERB2Q8NHR7 220 aa0.63□□□□□ -2.31
SCN1A-206ENST00000491429 H1FXQ92522 213 aaKnown RBP0.63□□□□□ -2.31
SCN1A-206ENST00000491429 OBSCN-AS1Q96MR7 158 aa0.63□□□□□ -2.31
SCN1A-206ENST00000491429 OR52E6Q96RD3 313 aa0.63□□□□□ -2.31
SCN1A-206ENST00000491429 NIPSNAP1Q9BPW8 284 aa0.63□□□□□ -2.31
SCN1A-206ENST00000491429 SLC39A9Q9NUM3 307 aa0.63□□□□□ -2.31
SCN1A-206ENST00000491429 KLK9Q9UKQ9 250 aa0.63□□□□□ -2.31
SCN1A-206ENST00000491429 RALGAPA2Q2PPJ7 1873 aa0.63□□□□□ -2.31
SCN1A-206ENST00000491429 MAST2Q6P0Q8 1798 aa0.62□□□□□ -2.31
SCN1A-206ENST00000491429 EXOC1LA0A1B0GW35 172 aa0.62□□□□□ -2.31
SCN1A-206ENST00000491429 BUB1B-PAK6H3BSN5 160 aa0.62□□□□□ -2.31
SCN1A-206ENST00000491429 OR1I1O60431 355 aa0.62□□□□□ -2.31
SCN1A-206ENST00000491429 CRYZL1O95825 349 aa0.62□□□□□ -2.31
SCN1A-206ENST00000491429 SULT1A1P50225 295 aa0.62□□□□□ -2.31
SCN1A-206ENST00000491429 RHEBQ15382 184 aa0.62□□□□□ -2.31
SCN1A-206ENST00000491429 SPANXN5Q5MJ07 72 aa0.62□□□□□ -2.31
SCN1A-206ENST00000491429 SIGLECL1Q8N7X8 197 aa0.62□□□□□ -2.31
SCN1A-206ENST00000491429 TOMM6Q96B49 74 aa0.62□□□□□ -2.31
SCN1A-206ENST00000491429 ERGIC3Q9Y282 383 aa0.62□□□□□ -2.31
SCN1A-206ENST00000491429 ZFP30Q9Y2G7 519 aa0.62□□□□□ -2.31
SCN1A-206ENST00000491429 NOTCH1P46531 2555 aa0.62□□□□□ -2.31
SCN1A-206ENST00000491429 POLEQ07864 2286 aa0.62□□□□□ -2.31
SCN1A-206ENST00000491429 MAP3K5Q99683 1374 aa0.61□□□□□ -2.31
SCN1A-206ENST00000491429 TOPBP1Q92547 1522 aa0.61□□□□□ -2.31
SCN1A-206ENST00000491429 OR4C46A6NHA9 309 aa0.61□□□□□ -2.31
SCN1A-206ENST00000491429 HYPMO75409 117 aa0.61□□□□□ -2.31
SCN1A-206ENST00000491429 IFNA10P01566 189 aa0.61□□□□□ -2.31
SCN1A-206ENST00000491429 MGST1P10620 155 aaKnown RBP0.61□□□□□ -2.31
SCN1A-206ENST00000491429 SSR2P43308 183 aa0.61□□□□□ -2.31
SCN1A-206ENST00000491429 ACOT6Q3I5F7 207 aaPredicted RBP0.61□□□□□ -2.31
SCN1A-206ENST00000491429 HIST3H2BBQ8N257 126 aa0.61□□□□□ -2.31
SCN1A-206ENST00000491429 OR52R1Q8NGF1 315 aa0.61□□□□□ -2.31
SCN1A-206ENST00000491429 TMEM56-RWDD3S4R434 201 aa0.61□□□□□ -2.31
SCN1A-206ENST00000491429 TECTAO75443 2155 aa0.61□□□□□ -2.31
SCN1A-206ENST00000491429 CACNA1BQ00975 2339 aa0.61□□□□□ -2.31
SCN1A-206ENST00000491429 WRNQ14191 1432 aaPredicted RBP eCLIP0.61□□□□□ -2.31
SCN1A-206ENST00000491429 CCDC88AQ3V6T2 1871 aa0.61□□□□□ -2.31
SCN1A-206ENST00000491429 HEATR5AQ86XA9 2040 aa0.6□□□□□ -2.31
SCN1A-206ENST00000491429 STRCQ7RTU9 1775 aa0.6□□□□□ -2.31
SCN1A-206ENST00000491429 MTUS2Q5JR59 1369 aa0.6□□□□□ -2.31
SCN1A-206ENST00000491429 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.6□□□□□ -2.31
SCN1A-206ENST00000491429 TRAV3A0A0B4J244 114 aa0.6□□□□□ -2.31
SCN1A-206ENST00000491429 M0R036 132 aa0.6□□□□□ -2.31
SCN1A-206ENST00000491429 CHP2O43745 196 aa0.6□□□□□ -2.31
SCN1A-206ENST00000491429 OR2T1O43869 369 aa0.6□□□□□ -2.31
SCN1A-206ENST00000491429 UBL3O95164 117 aa0.6□□□□□ -2.31
SCN1A-206ENST00000491429 IFNA16P05015 189 aa0.6□□□□□ -2.31
SCN1A-206ENST00000491429 COX6A1P12074 109 aa0.6□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms