RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 SPNP16150 400 aa8.39□□□□□ -1.07
VPS13D-210ENST00000489961 IAH1Q2TAA2 248 aaPredicted RBP8.39□□□□□ -1.07
VPS13D-210ENST00000489961 SLC24A4Q8NFF2 622 aa8.39□□□□□ -1.07
VPS13D-210ENST00000489961 S4R3C0 116 aa8.39□□□□□ -1.07
VPS13D-210ENST00000489961 C5orf51A6NDU8 294 aa8.38□□□□□ -1.07
VPS13D-210ENST00000489961 FAM25EA8MYX2 175 aa8.38□□□□□ -1.07
VPS13D-210ENST00000489961 WRBO00258 174 aa8.38□□□□□ -1.07
VPS13D-210ENST00000489961 CCSO14618 274 aa8.38□□□□□ -1.07
VPS13D-210ENST00000489961 SYNGR2O43760 224 aa8.38□□□□□ -1.07
VPS13D-210ENST00000489961 LY86O95711 162 aa8.38□□□□□ -1.07
VPS13D-210ENST00000489961 MT-CO2P00403 227 aa8.38□□□□□ -1.07
VPS13D-210ENST00000489961 IFNA10P01566 189 aa8.38□□□□□ -1.07
VPS13D-210ENST00000489961 IGHV3-23P01764 117 aa8.38□□□□□ -1.07
VPS13D-210ENST00000489961 NPY1RP25929 384 aa8.38□□□□□ -1.07
VPS13D-210ENST00000489961 NKX2-1P43699 371 aaPredicted RBP8.38□□□□□ -1.07
VPS13D-210ENST00000489961 ATP5IP56385 69 aaPredicted RBP8.38□□□□□ -1.07
VPS13D-210ENST00000489961 RGS21Q2M5E4 152 aa8.38□□□□□ -1.07
VPS13D-210ENST00000489961 RPEL1Q2QD12 228 aa8.38□□□□□ -1.07
VPS13D-210ENST00000489961 BSXQ3C1V8 233 aa8.38□□□□□ -1.07
VPS13D-210ENST00000489961 C2orf83Q53S99 150 aa8.38□□□□□ -1.07
VPS13D-210ENST00000489961 CLEC19AQ6UXS0 136 aa8.38□□□□□ -1.07
VPS13D-210ENST00000489961 GSG1LQ6UXU4 331 aa8.38□□□□□ -1.07
VPS13D-210ENST00000489961 ZBTB8BQ8NAP8 495 aaPredicted RBP8.38□□□□□ -1.07
VPS13D-210ENST00000489961 WFDC9Q8NEX5 89 aa8.38□□□□□ -1.07
VPS13D-210ENST00000489961 OR4D5Q8NGN0 318 aa8.38□□□□□ -1.07
VPS13D-210ENST00000489961 PINX1Q96BK5 328 aaKnown RBP8.38□□□□□ -1.07
VPS13D-210ENST00000489961 OR10C1Q96KK4 312 aa8.38□□□□□ -1.07
VPS13D-210ENST00000489961 CIB3Q96Q77 187 aaPredicted RBP8.38□□□□□ -1.07
VPS13D-210ENST00000489961 ATP6V0BQ99437 205 aa8.38□□□□□ -1.07
VPS13D-210ENST00000489961 MCRIP2Q9BUT9 160 aaKnown RBP8.38□□□□□ -1.07
VPS13D-210ENST00000489961 GAR1Q9NY12 217 aaKnown RBP8.38□□□□□ -1.07
VPS13D-210ENST00000489961 C21orf62Q9NYP8 219 aa8.38□□□□□ -1.07
VPS13D-210ENST00000489961 GSKIPQ9P0R6 139 aa8.38□□□□□ -1.07
VPS13D-210ENST00000489961 U3KQ87 197 aa8.38□□□□□ -1.07
VPS13D-210ENST00000489961 WNK1Q9H4A3 2382 aa8.37□□□□□ -1.07
VPS13D-210ENST00000489961 IGHV3-21A0A0B4J1V1 117 aa8.37□□□□□ -1.07
VPS13D-210ENST00000489961 I3L2K1 104 aa8.37□□□□□ -1.07
VPS13D-210ENST00000489961 K7EIM0 57 aa8.37□□□□□ -1.07
VPS13D-210ENST00000489961 GGCTO75223 188 aaKnown RBP8.37□□□□□ -1.07
VPS13D-210ENST00000489961 SCGB1D2O95969 90 aa8.37□□□□□ -1.07
VPS13D-210ENST00000489961 TRBV12-3P01733 135 aa8.37□□□□□ -1.07
VPS13D-210ENST00000489961 IAPPP10997 89 aa8.37□□□□□ -1.07
VPS13D-210ENST00000489961 HOXD3P31249 432 aaPredicted RBP8.37□□□□□ -1.07
VPS13D-210ENST00000489961 ARL3P36405 182 aa8.37□□□□□ -1.07
VPS13D-210ENST00000489961 SLURP1P55000 103 aa8.37□□□□□ -1.07
VPS13D-210ENST00000489961 RPP30P78346 268 aaKnown RBP8.37□□□□□ -1.07
VPS13D-210ENST00000489961 ID3Q02535 119 aa8.37□□□□□ -1.07
VPS13D-210ENST00000489961 TATDN3Q17R31 274 aa8.37□□□□□ -1.07
VPS13D-210ENST00000489961 PVRIGQ6DKI7 326 aa8.37□□□□□ -1.07
VPS13D-210ENST00000489961 ZNF502Q8TBZ5 544 aa8.37□□□□□ -1.07
VPS13D-210ENST00000489961 RNASEH2CQ8TDP1 164 aaKnown RBP8.37□□□□□ -1.07
VPS13D-210ENST00000489961 SCARB1Q8WTV0 552 aa8.37□□□□□ -1.07
VPS13D-210ENST00000489961 DCUN1D4Q92564 292 aa8.37□□□□□ -1.07
VPS13D-210ENST00000489961 RCC1LQ96I51 464 aaKnown RBP8.37□□□□□ -1.07
VPS13D-210ENST00000489961 C2orf50Q96LR7 162 aa8.37□□□□□ -1.07
VPS13D-210ENST00000489961 CCDC140Q96MF4 163 aa8.37□□□□□ -1.07
VPS13D-210ENST00000489961 GPR61Q9BZJ8 451 aa8.37□□□□□ -1.07
VPS13D-210ENST00000489961 MAGT1Q9H0U3 335 aa8.37□□□□□ -1.07
VPS13D-210ENST00000489961 RPS10-NUDT3A0A1W2PQS6 291 aa8.36□□□□□ -1.07
VPS13D-210ENST00000489961 PPP5D1E7EU14 171 aa8.36□□□□□ -1.07
VPS13D-210ENST00000489961 BMPR1BO00238 502 aa8.36□□□□□ -1.07
VPS13D-210ENST00000489961 OVOL1O14753 267 aa8.36□□□□□ -1.07
VPS13D-210ENST00000489961 SSNA1O43805 119 aa8.36□□□□□ -1.07
VPS13D-210ENST00000489961 CLEC3BP05452 202 aa8.36□□□□□ -1.07
VPS13D-210ENST00000489961 GPR183P32249 361 aa8.36□□□□□ -1.07
VPS13D-210ENST00000489961 OPRK1P41145 380 aa8.36□□□□□ -1.07
VPS13D-210ENST00000489961 MFAP4P55083 255 aa8.36□□□□□ -1.07
VPS13D-210ENST00000489961 POLR2GP62487 172 aaKnown RBP eCLIP8.36□□□□□ -1.07
VPS13D-210ENST00000489961 Q56UQ5 140 aa8.36□□□□□ -1.07
VPS13D-210ENST00000489961 ACSM6Q6P461 480 aa8.36□□□□□ -1.07
VPS13D-210ENST00000489961 UBAC2Q8NBM4 344 aa8.36□□□□□ -1.07
VPS13D-210ENST00000489961 DLX4Q92988 240 aaPredicted RBP8.36□□□□□ -1.07
VPS13D-210ENST00000489961 BSCL2Q96G97 398 aaPredicted RBP8.36□□□□□ -1.07
VPS13D-210ENST00000489961 TXN2Q99757 166 aa8.36□□□□□ -1.07
VPS13D-210ENST00000489961 C7orf66A4D0T2 115 aa8.35□□□□□ -1.07
VPS13D-210ENST00000489961 OR2T8A6NH00 312 aa8.35□□□□□ -1.07
VPS13D-210ENST00000489961 GOSR2O14653 212 aa8.35□□□□□ -1.07
VPS13D-210ENST00000489961 TGOLN2O43493 480 aa8.35□□□□□ -1.07
VPS13D-210ENST00000489961 SSSCA1O60232 199 aa8.35□□□□□ -1.07
VPS13D-210ENST00000489961 GNG7O60262 68 aa8.35□□□□□ -1.07
VPS13D-210ENST00000489961 IFNA4P05014 189 aa8.35□□□□□ -1.07
VPS13D-210ENST00000489961 IGLL1P15814 213 aa8.35□□□□□ -1.07
VPS13D-210ENST00000489961 NPBWR1P48145 328 aa8.35□□□□□ -1.07
VPS13D-210ENST00000489961 RAB11AP62491 216 aa8.35□□□□□ -1.07
VPS13D-210ENST00000489961 KLF5Q13887 457 aaPredicted RBP8.35□□□□□ -1.07
VPS13D-210ENST00000489961 ETFRF1Q6IPR1 90 aa8.35□□□□□ -1.07
VPS13D-210ENST00000489961 C11orf87Q6NUJ2 197 aa8.35□□□□□ -1.07
VPS13D-210ENST00000489961 SPSB3Q6PJ21 355 aa8.35□□□□□ -1.07
VPS13D-210ENST00000489961 C1QL4Q86Z23 238 aa8.35□□□□□ -1.07
VPS13D-210ENST00000489961 PAIP2BQ9ULR5 123 aaKnown RBP8.35□□□□□ -1.07
VPS13D-210ENST00000489961 SEC14L6B5MCN3 397 aa8.34□□□□□ -1.07
VPS13D-210ENST00000489961 NUPL2O15504 423 aaKnown RBP8.34□□□□□ -1.07
VPS13D-210ENST00000489961 SCGB2A1O75556 95 aa8.34□□□□□ -1.07
VPS13D-210ENST00000489961 OR2C1O95371 312 aa8.34□□□□□ -1.07
VPS13D-210ENST00000489961 IGHV3-48P01763 117 aa8.34□□□□□ -1.07
VPS13D-210ENST00000489961 MBPP02686 304 aaPredicted RBP8.34□□□□□ -1.07
VPS13D-210ENST00000489961 SLC25A4P12235 298 aa8.34□□□□□ -1.07
VPS13D-210ENST00000489961 FCGR2BP31994 310 aaPredicted RBP8.34□□□□□ -1.07
VPS13D-210ENST00000489961 SYNJ2BPP57105 145 aa8.34□□□□□ -1.07
VPS13D-210ENST00000489961 FAM106AQ4KMX7 169 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms