RNA–Protein interactions for RNA: ENST00000488186.5

C9orf3-219, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 1,211 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-219ENST00000488186 CMYA5Q8N3K9 4069 aa12.17□□□□□ -0.46
C9orf3-219ENST00000488186 IGHV4OR15-8A0A075B7B6 117 aa12.16□□□□□ -0.46
C9orf3-219ENST00000488186 A0A087WW49 117 aa12.16□□□□□ -0.46
C9orf3-219ENST00000488186 IGHV3-21A0A0B4J1V1 117 aa12.16□□□□□ -0.46
C9orf3-219ENST00000488186 SNRPGP15A8MWD9 76 aa12.16□□□□□ -0.46
C9orf3-219ENST00000488186 PITX3O75364 302 aa12.16□□□□□ -0.46
C9orf3-219ENST00000488186 SPNP16150 400 aa12.16□□□□□ -0.46
C9orf3-219ENST00000488186 ZP3P21754 424 aa12.16□□□□□ -0.46
C9orf3-219ENST00000488186 RPP30P78346 268 aaKnown RBP12.16□□□□□ -0.46
C9orf3-219ENST00000488186 KLK9Q2XQG4 91 aa12.16□□□□□ -0.46
C9orf3-219ENST00000488186 ETV3LQ6ZN32 361 aa12.16□□□□□ -0.46
C9orf3-219ENST00000488186 VN1R17PQ8TDU5 208 aa12.16□□□□□ -0.46
C9orf3-219ENST00000488186 MAGT1Q9H0U3 335 aa12.16□□□□□ -0.46
C9orf3-219ENST00000488186 KLK9Q9UKQ9 250 aa12.16□□□□□ -0.46
C9orf3-219ENST00000488186 U3KQ87 197 aa12.16□□□□□ -0.46
C9orf3-219ENST00000488186 NOTCH3Q9UM47 2321 aa12.15□□□□□ -0.46
C9orf3-219ENST00000488186 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.15□□□□□ -0.46
C9orf3-219ENST00000488186 MPTX1A8MV57 137 aa12.15□□□□□ -0.46
C9orf3-219ENST00000488186 CORTO00230 105 aa12.15□□□□□ -0.46
C9orf3-219ENST00000488186 CCSO14618 274 aa12.15□□□□□ -0.46
C9orf3-219ENST00000488186 SYNGR2O43760 224 aa12.15□□□□□ -0.46
C9orf3-219ENST00000488186 SSNA1O43805 119 aa12.15□□□□□ -0.46
C9orf3-219ENST00000488186 SCGB1D2O95969 90 aa12.15□□□□□ -0.46
C9orf3-219ENST00000488186 NKX2-1P43699 371 aaPredicted RBP12.15□□□□□ -0.46
C9orf3-219ENST00000488186 MFAP2P55001 183 aa12.15□□□□□ -0.46
C9orf3-219ENST00000488186 TATDN3Q17R31 274 aa12.15□□□□□ -0.46
C9orf3-219ENST00000488186 CLEC19AQ6UXS0 136 aa12.15□□□□□ -0.46
C9orf3-219ENST00000488186 GSG1LQ6UXU4 331 aa12.15□□□□□ -0.46
C9orf3-219ENST00000488186 SLC24A4Q8NFF2 622 aa12.15□□□□□ -0.46
C9orf3-219ENST00000488186 CIB3Q96Q77 187 aaPredicted RBP12.15□□□□□ -0.46
C9orf3-219ENST00000488186 PAIP2BQ9ULR5 123 aaKnown RBP12.15□□□□□ -0.46
C9orf3-219ENST00000488186 DMRT1Q9Y5R6 373 aa12.15□□□□□ -0.46
C9orf3-219ENST00000488186 MFSD2BA6NFX1 497 aa12.14□□□□□ -0.47
C9orf3-219ENST00000488186 CLEC3BP05452 202 aa12.14□□□□□ -0.47
C9orf3-219ENST00000488186 RNASE2P10153 161 aaKnown RBP12.14□□□□□ -0.47
C9orf3-219ENST00000488186 IAPPP10997 89 aa12.14□□□□□ -0.47
C9orf3-219ENST00000488186 RPEL1Q2QD12 228 aa12.14□□□□□ -0.47
C9orf3-219ENST00000488186 Q56UQ5 140 aa12.14□□□□□ -0.47
C9orf3-219ENST00000488186 LINC00482Q8N8I6 264 aa12.14□□□□□ -0.47
C9orf3-219ENST00000488186 ZBTB8BQ8NAP8 495 aaPredicted RBP12.14□□□□□ -0.47
C9orf3-219ENST00000488186 UBAC2Q8NBM4 344 aa12.14□□□□□ -0.47
C9orf3-219ENST00000488186 OR10C1Q96KK4 312 aa12.14□□□□□ -0.47
C9orf3-219ENST00000488186 C21orf62Q9NYP8 219 aa12.14□□□□□ -0.47
C9orf3-219ENST00000488186 LY86O95711 162 aa12.13□□□□□ -0.47
C9orf3-219ENST00000488186 MT-CO2P00403 227 aa12.13□□□□□ -0.47
C9orf3-219ENST00000488186 NPY1RP25929 384 aa12.13□□□□□ -0.47
C9orf3-219ENST00000488186 ARL3P36405 182 aa12.13□□□□□ -0.47
C9orf3-219ENST00000488186 OPRK1P41145 380 aa12.13□□□□□ -0.47
C9orf3-219ENST00000488186 SLURP1P55000 103 aa12.13□□□□□ -0.47
C9orf3-219ENST00000488186 MFAP4P55083 255 aa12.13□□□□□ -0.47
C9orf3-219ENST00000488186 ATP5IP56385 69 aaPredicted RBP12.13□□□□□ -0.47
C9orf3-219ENST00000488186 RAB11AP62491 216 aa12.13□□□□□ -0.47
C9orf3-219ENST00000488186 FHL3Q13643 280 aa12.13□□□□□ -0.47
C9orf3-219ENST00000488186 C2orf83Q53S99 150 aa12.13□□□□□ -0.47
C9orf3-219ENST00000488186 SCARB1Q8WTV0 552 aa12.13□□□□□ -0.47
C9orf3-219ENST00000488186 C2orf50Q96LR7 162 aa12.13□□□□□ -0.47
C9orf3-219ENST00000488186 MCRIP2Q9BUT9 160 aaKnown RBP12.13□□□□□ -0.47
C9orf3-219ENST00000488186 GAR1Q9NY12 217 aaKnown RBP12.13□□□□□ -0.47
C9orf3-219ENST00000488186 NOTCH1P46531 2555 aa12.12□□□□□ -0.47
C9orf3-219ENST00000488186 RPS10-NUDT3A0A1W2PQS6 291 aa12.12□□□□□ -0.47
C9orf3-219ENST00000488186 PPP5D1E7EU14 171 aa12.12□□□□□ -0.47
C9orf3-219ENST00000488186 GOSR2O14653 212 aa12.12□□□□□ -0.47
C9orf3-219ENST00000488186 GGCTO75223 188 aaKnown RBP12.12□□□□□ -0.47
C9orf3-219ENST00000488186 TRBV12-3P01733 135 aa12.12□□□□□ -0.47
C9orf3-219ENST00000488186 IFNA4P05014 189 aa12.12□□□□□ -0.47
C9orf3-219ENST00000488186 HOXD3P31249 432 aaPredicted RBP12.12□□□□□ -0.47
C9orf3-219ENST00000488186 GPR183P32249 361 aa12.12□□□□□ -0.47
C9orf3-219ENST00000488186 POLR2GP62487 172 aaKnown RBP eCLIP12.12□□□□□ -0.47
C9orf3-219ENST00000488186 ID3Q02535 119 aa12.12□□□□□ -0.47
C9orf3-219ENST00000488186 ACSM6Q6P461 480 aa12.12□□□□□ -0.47
C9orf3-219ENST00000488186 WFDC9Q8NEX5 89 aa12.12□□□□□ -0.47
C9orf3-219ENST00000488186 OR4D5Q8NGN0 318 aa12.12□□□□□ -0.47
C9orf3-219ENST00000488186 ZNF502Q8TBZ5 544 aa12.12□□□□□ -0.47
C9orf3-219ENST00000488186 DCUN1D4Q92564 292 aa12.12□□□□□ -0.47
C9orf3-219ENST00000488186 OR2T8A6NH00 312 aa12.11□□□□□ -0.47
C9orf3-219ENST00000488186 I3L2K1 104 aa12.11□□□□□ -0.47
C9orf3-219ENST00000488186 K7EIM0 57 aa12.11□□□□□ -0.47
C9orf3-219ENST00000488186 OVOL1O14753 267 aa12.11□□□□□ -0.47
C9orf3-219ENST00000488186 SSSCA1O60232 199 aa12.11□□□□□ -0.47
C9orf3-219ENST00000488186 IGHV3-48P01763 117 aa12.11□□□□□ -0.47
C9orf3-219ENST00000488186 NPBWR1P48145 328 aa12.11□□□□□ -0.47
C9orf3-219ENST00000488186 BSXQ3C1V8 233 aa12.11□□□□□ -0.47
C9orf3-219ENST00000488186 ETFRF1Q6IPR1 90 aa12.11□□□□□ -0.47
C9orf3-219ENST00000488186 RNASEH2CQ8TDP1 164 aaKnown RBP12.11□□□□□ -0.47
C9orf3-219ENST00000488186 DLX4Q92988 240 aaPredicted RBP12.11□□□□□ -0.47
C9orf3-219ENST00000488186 RCC1LQ96I51 464 aaKnown RBP12.11□□□□□ -0.47
C9orf3-219ENST00000488186 CCDC140Q96MF4 163 aa12.11□□□□□ -0.47
C9orf3-219ENST00000488186 TXN2Q99757 166 aa12.11□□□□□ -0.47
C9orf3-219ENST00000488186 GPR61Q9BZJ8 451 aa12.11□□□□□ -0.47
C9orf3-219ENST00000488186 ZC4H2Q9NQZ6 224 aa12.11□□□□□ -0.47
C9orf3-219ENST00000488186 L7N2F9 121 aa12.1□□□□□ -0.47
C9orf3-219ENST00000488186 BMPR1BO00238 502 aa12.1□□□□□ -0.47
C9orf3-219ENST00000488186 GNG7O60262 68 aa12.1□□□□□ -0.47
C9orf3-219ENST00000488186 SCGB2A1O75556 95 aa12.1□□□□□ -0.47
C9orf3-219ENST00000488186 OR2C1O95371 312 aa12.1□□□□□ -0.47
C9orf3-219ENST00000488186 IGLL1P15814 213 aa12.1□□□□□ -0.47
C9orf3-219ENST00000488186 VAMP2P63027 116 aa12.1□□□□□ -0.47
C9orf3-219ENST00000488186 FAM106AQ4KMX7 169 aa12.1□□□□□ -0.47
C9orf3-219ENST00000488186 SPANXN5Q5MJ07 72 aa12.1□□□□□ -0.47
C9orf3-219ENST00000488186 BSCL2Q96G97 398 aaPredicted RBP12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms