RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 PTPRSQ13332 1948 aa0.32□□□□□ -2.36
VPS50-216ENST00000484954 MTUS2Q5JR59 1369 aa0.32□□□□□ -2.36
VPS50-216ENST00000484954 WRNQ14191 1432 aaPredicted RBP eCLIP0.31□□□□□ -2.36
VPS50-216ENST00000484954 A0A1B0GV50 99 aa0.31□□□□□ -2.36
VPS50-216ENST00000484954 OR4C46A6NHA9 309 aa0.31□□□□□ -2.36
VPS50-216ENST00000484954 C2orf70A6NJV1 201 aa0.31□□□□□ -2.36
VPS50-216ENST00000484954 PHGR1C9JFL3 82 aa0.31□□□□□ -2.36
VPS50-216ENST00000484954 CHP2O43745 196 aa0.31□□□□□ -2.36
VPS50-216ENST00000484954 OR2T1O43869 369 aa0.31□□□□□ -2.36
VPS50-216ENST00000484954 NIPSNAP2O75323 286 aa0.31□□□□□ -2.36
VPS50-216ENST00000484954 AHSA1O95433 338 aa0.31□□□□□ -2.36
VPS50-216ENST00000484954 ASAH2BP0C7U1 165 aa0.31□□□□□ -2.36
VPS50-216ENST00000484954 SPI1P17947 270 aa0.31□□□□□ -2.36
VPS50-216ENST00000484954 RPL5P46777 297 aaKnown RBP0.31□□□□□ -2.36
VPS50-216ENST00000484954 AP2S1P53680 142 aaPredicted RBP0.31□□□□□ -2.36
VPS50-216ENST00000484954 DEFA1P59665 94 aa0.31□□□□□ -2.36
VPS50-216ENST00000484954 SPCS3P61009 180 aa0.31□□□□□ -2.36
VPS50-216ENST00000484954 MAGOHP61326 146 aaKnown RBP0.31□□□□□ -2.36
VPS50-216ENST00000484954 STX5Q13190 355 aa0.31□□□□□ -2.36
VPS50-216ENST00000484954 PDE6HQ13956 83 aa0.31□□□□□ -2.36
VPS50-216ENST00000484954 NDUFA5Q16718 116 aa0.31□□□□□ -2.36
VPS50-216ENST00000484954 RPL22L1Q6P5R6 122 aaKnown RBP0.31□□□□□ -2.36
VPS50-216ENST00000484954 OTUD6BQ8N6M0 293 aa0.31□□□□□ -2.36
VPS50-216ENST00000484954 C12orf29Q8N999 325 aa0.31□□□□□ -2.36
VPS50-216ENST00000484954 WFDC11Q8NEX6 87 aa0.31□□□□□ -2.36
VPS50-216ENST00000484954 IMP4Q96G21 291 aaKnown RBP0.31□□□□□ -2.36
VPS50-216ENST00000484954 TSPAN32Q96QS1 320 aa0.31□□□□□ -2.36
VPS50-216ENST00000484954 OR52E6Q96RD3 313 aa0.31□□□□□ -2.36
VPS50-216ENST00000484954 SERPINI1Q99574 410 aa0.31□□□□□ -2.36
VPS50-216ENST00000484954 C20orf27Q9GZN8 174 aa0.31□□□□□ -2.36
VPS50-216ENST00000484954 TRABDQ9H4I3 376 aa0.31□□□□□ -2.36
VPS50-216ENST00000484954 GUCA1BQ9UMX6 200 aa0.31□□□□□ -2.36
VPS50-216ENST00000484954 PCDH15Q96QU1 1955 aa0.31□□□□□ -2.36
VPS50-216ENST00000484954 GLI3P10071 1580 aa0.31□□□□□ -2.36
VPS50-216ENST00000484954 HEATR5AQ86XA9 2040 aa0.3□□□□□ -2.36
VPS50-216ENST00000484954 TRAV14DV4A0A0A6YYC5 116 aa0.3□□□□□ -2.36
VPS50-216ENST00000484954 TRAV26-2A0A0B4J265 109 aa0.3□□□□□ -2.36
VPS50-216ENST00000484954 KPNA3O00505 521 aaPredicted RBP0.3□□□□□ -2.36
VPS50-216ENST00000484954 GEMIN2O14893 280 aaKnown RBP0.3□□□□□ -2.36
VPS50-216ENST00000484954 FADS1O60427 444 aa0.3□□□□□ -2.36
VPS50-216ENST00000484954 OR2J2O76002 312 aa0.3□□□□□ -2.36
VPS50-216ENST00000484954 TTRP02766 147 aa0.3□□□□□ -2.36
VPS50-216ENST00000484954 IFNA16P05015 189 aa0.3□□□□□ -2.36
VPS50-216ENST00000484954 MIFP14174 115 aa0.3□□□□□ -2.36
VPS50-216ENST00000484954 ZNF93P35789 620 aaPredicted RBP0.3□□□□□ -2.36
VPS50-216ENST00000484954 PSME3P61289 254 aa0.3□□□□□ -2.36
VPS50-216ENST00000484954 SNRPD2P62316 118 aaKnown RBP0.3□□□□□ -2.36
VPS50-216ENST00000484954 SPANXN3Q5MJ09 141 aa0.3□□□□□ -2.36
VPS50-216ENST00000484954 TEX36Q5VZQ5 186 aa0.3□□□□□ -2.36
VPS50-216ENST00000484954 AAED1Q7RTV5 226 aa0.3□□□□□ -2.36
VPS50-216ENST00000484954 DEFB128Q7Z7B8 93 aa0.3□□□□□ -2.36
VPS50-216ENST00000484954 CLVS1Q8IUQ0 354 aaPredicted RBP0.3□□□□□ -2.36
VPS50-216ENST00000484954 IQCF2Q8IXL9 164 aa0.3□□□□□ -2.36
VPS50-216ENST00000484954 LINC00311Q8N616 119 aa0.3□□□□□ -2.36
VPS50-216ENST00000484954 OR5A1Q8NGJ0 315 aa0.3□□□□□ -2.36
VPS50-216ENST00000484954 TOMM6Q96B49 74 aa0.3□□□□□ -2.36
VPS50-216ENST00000484954 OBSCN-AS1Q96MR7 158 aa0.3□□□□□ -2.36
VPS50-216ENST00000484954 SCGB3A1Q96QR1 104 aa0.3□□□□□ -2.36
VPS50-216ENST00000484954 SLC50A1Q9BRV3 221 aa0.3□□□□□ -2.36
VPS50-216ENST00000484954 MRPS26Q9BYN8 205 aaKnown RBP0.3□□□□□ -2.36
VPS50-216ENST00000484954 RNASE7Q9H1E1 156 aaKnown RBP0.3□□□□□ -2.36
VPS50-216ENST00000484954 VPS29Q9UBQ0 182 aa0.3□□□□□ -2.36
VPS50-216ENST00000484954 CKLFQ9UBR5 152 aa0.3□□□□□ -2.36
VPS50-216ENST00000484954 ZFP30Q9Y2G7 519 aa0.3□□□□□ -2.36
VPS50-216ENST00000484954 NOSIPQ9Y314 301 aaKnown RBP0.3□□□□□ -2.36
VPS50-216ENST00000484954 ROBO3Q96MS0 1386 aa0.3□□□□□ -2.36
VPS50-216ENST00000484954 KMT2DO14686 5537 aa0.3□□□□□ -2.36
VPS50-216ENST00000484954 ZFYVE9O95405 1425 aa0.3□□□□□ -2.36
VPS50-216ENST00000484954 HEATR5BQ9P2D3 2071 aa0.29□□□□□ -2.36
VPS50-216ENST00000484954 MED12LQ86YW9 2145 aa0.29□□□□□ -2.36
VPS50-216ENST00000484954 MACF1Q9UPN3 7388 aaKnown RBP0.29□□□□□ -2.36
VPS50-216ENST00000484954 GREB1Q4ZG55 1949 aa0.29□□□□□ -2.36
VPS50-216ENST00000484954 A0A0D9SG52 128 aa0.29□□□□□ -2.36
VPS50-216ENST00000484954 FAM236DA0A1B0GTK5 79 aa0.29□□□□□ -2.36
VPS50-216ENST00000484954 EXOC1LA0A1B0GW35 172 aa0.29□□□□□ -2.36
VPS50-216ENST00000484954 M0R2N4 97 aa0.29□□□□□ -2.36
VPS50-216ENST00000484954 OR5F1O95221 314 aa0.29□□□□□ -2.36
VPS50-216ENST00000484954 CNIH1O95406 144 aa0.29□□□□□ -2.36
VPS50-216ENST00000484954 TNNC2P02585 160 aa0.29□□□□□ -2.36
VPS50-216ENST00000484954 SERPINA6P08185 405 aa0.29□□□□□ -2.36
VPS50-216ENST00000484954 SMIM10L2AP0DMW4 78 aa0.29□□□□□ -2.36
VPS50-216ENST00000484954 SMIM10L2BP0DMW5 78 aa0.29□□□□□ -2.36
VPS50-216ENST00000484954 FAM236CP0DP71 79 aa0.29□□□□□ -2.36
VPS50-216ENST00000484954 CDC42P60953 191 aa0.29□□□□□ -2.36
VPS50-216ENST00000484954 RAB4BP61018 213 aa0.29□□□□□ -2.36
VPS50-216ENST00000484954 RANP62826 216 aaKnown RBP0.29□□□□□ -2.36
VPS50-216ENST00000484954 DEFB115Q30KQ5 88 aa0.29□□□□□ -2.36
VPS50-216ENST00000484954 LINC01554Q52M75 96 aa0.29□□□□□ -2.36
VPS50-216ENST00000484954 CCDC122Q5T0U0 273 aa0.29□□□□□ -2.36
VPS50-216ENST00000484954 LPCAT3Q6P1A2 487 aa0.29□□□□□ -2.36
VPS50-216ENST00000484954 MIR17HGQ75NE6 70 aa0.29□□□□□ -2.36
VPS50-216ENST00000484954 ANKRD29Q8N6D5 301 aa0.29□□□□□ -2.36
VPS50-216ENST00000484954 OR8J2Q8NGG1 315 aa0.29□□□□□ -2.36
VPS50-216ENST00000484954 OR4D11Q8NGI4 311 aa0.29□□□□□ -2.36
VPS50-216ENST00000484954 C8orf76Q96K31 380 aa0.29□□□□□ -2.36
VPS50-216ENST00000484954 ARL5BQ96KC2 179 aa0.29□□□□□ -2.36
VPS50-216ENST00000484954 DCSTAMPQ9H295 470 aa0.29□□□□□ -2.36
VPS50-216ENST00000484954 PRTFDC1Q9NRG1 225 aa0.29□□□□□ -2.36
VPS50-216ENST00000484954 OR5AC2Q9NZP5 309 aa0.29□□□□□ -2.36
VPS50-216ENST00000484954 SNURFQ9Y675 71 aa0.29□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms