RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 ASPHD2Q6ICH7 369 aa11.31□□□□□ -0.6
COL6A3-209ENST00000472056 CT55Q8WUE5 264 aa11.31□□□□□ -0.6
COL6A3-209ENST00000472056 ZNF479Q96JC4 524 aa11.31□□□□□ -0.6
COL6A3-209ENST00000472056 DLEU1O43261 78 aa11.31□□□□□ -0.6
COL6A3-209ENST00000472056 TMEM144Q7Z5S9 345 aa11.31□□□□□ -0.6
COL6A3-209ENST00000472056 KLK15Q9H2R5 256 aa11.31□□□□□ -0.6
COL6A3-209ENST00000472056 ZG16O60844 167 aa11.31□□□□□ -0.6
COL6A3-209ENST00000472056 CLEC2AQ6UVW9 174 aa11.31□□□□□ -0.6
COL6A3-209ENST00000472056 CD160O95971 181 aa11.31□□□□□ -0.6
COL6A3-209ENST00000472056 PMVKQ15126 192 aa11.31□□□□□ -0.6
COL6A3-209ENST00000472056 RPL23P62829 140 aaKnown RBP11.31□□□□□ -0.6
COL6A3-209ENST00000472056 LOXL4Q96JB6 756 aa11.31□□□□□ -0.6
COL6A3-209ENST00000472056 FOXQ1Q9C009 403 aa11.31□□□□□ -0.6
COL6A3-209ENST00000472056 CEP192Q8TEP8 1941 aa11.31□□□□□ -0.6
COL6A3-209ENST00000472056 DUSP15Q9H1R2 295 aaPredicted RBP11.31□□□□□ -0.6
COL6A3-209ENST00000472056 TMEM74BQ9NUR3 256 aa11.31□□□□□ -0.6
COL6A3-209ENST00000472056 FOXD3Q9UJU5 478 aaPredicted RBP11.3□□□□□ -0.6
COL6A3-209ENST00000472056 NUP210Q8TEM1 1887 aaPredicted RBP11.3□□□□□ -0.6
COL6A3-209ENST00000472056 MYOD1P15172 320 aa11.3□□□□□ -0.6
COL6A3-209ENST00000472056 MAGEA5P43359 124 aa11.3□□□□□ -0.6
COL6A3-209ENST00000472056 ICAM4Q14773 271 aa11.3□□□□□ -0.6
COL6A3-209ENST00000472056 ZXDCQ2QGD7 858 aaPredicted RBP11.3□□□□□ -0.6
COL6A3-209ENST00000472056 IGKCP01834 107 aa11.3□□□□□ -0.6
COL6A3-209ENST00000472056 KIAA1644Q3SXP7 199 aa11.3□□□□□ -0.6
COL6A3-209ENST00000472056 GFRA1P56159 465 aa11.3□□□□□ -0.6
COL6A3-209ENST00000472056 HIST3H2BBQ8N257 126 aa11.3□□□□□ -0.6
COL6A3-209ENST00000472056 FAM60AQ9NP50 221 aa11.3□□□□□ -0.6
COL6A3-209ENST00000472056 IGHV1OR15-9A0A0B4J2B8 117 aa11.3□□□□□ -0.6
COL6A3-209ENST00000472056 SSBP2P81877 361 aaPredicted RBP11.3□□□□□ -0.6
COL6A3-209ENST00000472056 PVRIGQ6DKI7 326 aa11.3□□□□□ -0.6
COL6A3-209ENST00000472056 TSKUQ8WUA8 353 aa11.3□□□□□ -0.6
COL6A3-209ENST00000472056 MDKP21741 143 aaPredicted RBP11.3□□□□□ -0.6
COL6A3-209ENST00000472056 LEPP41159 167 aa11.3□□□□□ -0.6
COL6A3-209ENST00000472056 IGHV3-13P01766 116 aa11.29□□□□□ -0.6
COL6A3-209ENST00000472056 IGHV3-7P01780 117 aa11.29□□□□□ -0.6
COL6A3-209ENST00000472056 PLA2G3Q9NZ20 509 aa11.29□□□□□ -0.6
COL6A3-209ENST00000472056 C2orf16Q68DN1 1984 aa11.29□□□□□ -0.6
COL6A3-209ENST00000472056 CHTOPQ9Y3Y2 248 aaKnown RBP11.29□□□□□ -0.6
COL6A3-209ENST00000472056 FABP5P3A8MUU1 101 aa11.29□□□□□ -0.6
COL6A3-209ENST00000472056 CEACAM1P13688 526 aa11.29□□□□□ -0.6
COL6A3-209ENST00000472056 GAGE1Q13065 139 aa11.29□□□□□ -0.6
COL6A3-209ENST00000472056 TMEM171Q8WVE6 324 aa11.29□□□□□ -0.6
COL6A3-209ENST00000472056 OR5P3Q8WZ94 311 aa11.29□□□□□ -0.6
COL6A3-209ENST00000472056 IFI27L2Q9H2X8 130 aa11.29□□□□□ -0.6
COL6A3-209ENST00000472056 IL6RP08887 468 aaPredicted RBP11.29□□□□□ -0.6
COL6A3-209ENST00000472056 MALP21145 153 aa11.29□□□□□ -0.6
COL6A3-209ENST00000472056 UCN2Q96RP3 112 aa11.29□□□□□ -0.6
COL6A3-209ENST00000472056 ZNF106Q9H2Y7 1883 aaKnown RBP11.29□□□□□ -0.6
COL6A3-209ENST00000472056 INAFM2P0DMQ5 153 aa11.29□□□□□ -0.6
COL6A3-209ENST00000472056 CTHRC1Q96CG8 243 aa11.29□□□□□ -0.6
COL6A3-209ENST00000472056 IGHV5-10-1A0A0J9YXX1 117 aa11.28□□□□□ -0.6
COL6A3-209ENST00000472056 CCL3P10147 92 aa11.28□□□□□ -0.6
COL6A3-209ENST00000472056 MAJINQ3KP22 176 aa11.28□□□□□ -0.6
COL6A3-209ENST00000472056 SEMA5BQ9P283 1151 aa11.28□□□□□ -0.6
COL6A3-209ENST00000472056 ERG28Q9UKR5 140 aa11.28□□□□□ -0.6
COL6A3-209ENST00000472056 M0R2P5 195 aa11.28□□□□□ -0.6
COL6A3-209ENST00000472056 LAGE3Q14657 143 aa11.28□□□□□ -0.6
COL6A3-209ENST00000472056 NHP2Q9NX24 153 aaKnown RBP11.28□□□□□ -0.6
COL6A3-209ENST00000472056 COL11A2P13942 1736 aaPredicted RBP11.28□□□□□ -0.6
COL6A3-209ENST00000472056 PATE4P0C8F1 98 aa11.28□□□□□ -0.6
COL6A3-209ENST00000472056 ZP1P60852 638 aa11.28□□□□□ -0.6
COL6A3-209ENST00000472056 DCAF10Q5QP82 559 aa11.28□□□□□ -0.6
COL6A3-209ENST00000472056 TIMP3P35625 211 aa11.28□□□□□ -0.6
COL6A3-209ENST00000472056 ARRDC1-AS1Q9H2J1 176 aa11.28□□□□□ -0.6
COL6A3-209ENST00000472056 IGHV4-39P01824 125 aa11.28□□□□□ -0.6
COL6A3-209ENST00000472056 GAGE12BA1L429 117 aa11.27□□□□□ -0.6
COL6A3-209ENST00000472056 LINC00271P0C7V0 271 aa11.27□□□□□ -0.6
COL6A3-209ENST00000472056 HOXD3P31249 432 aaPredicted RBP11.27□□□□□ -0.6
COL6A3-209ENST00000472056 RIPPLY3P57055 190 aa11.27□□□□□ -0.6
COL6A3-209ENST00000472056 C18orf12Q96KH6 178 aa11.27□□□□□ -0.6
COL6A3-209ENST00000472056 SLC25A53Q5H9E4 307 aa11.27□□□□□ -0.6
COL6A3-209ENST00000472056 DTX2Q86UW9 622 aa11.27□□□□□ -0.6
COL6A3-209ENST00000472056 FNDC4Q9H6D8 234 aaPredicted RBP11.27□□□□□ -0.6
COL6A3-209ENST00000472056 TRBV6-7A0A0A0MS04 114 aa11.27□□□□□ -0.61
COL6A3-209ENST00000472056 NAPSAO96009 420 aa11.27□□□□□ -0.61
COL6A3-209ENST00000472056 TMEM54Q969K7 222 aa11.27□□□□□ -0.61
COL6A3-209ENST00000472056 C3AR1Q16581 482 aa11.27□□□□□ -0.61
COL6A3-209ENST00000472056 ACTL10Q5JWF8 245 aa11.27□□□□□ -0.61
COL6A3-209ENST00000472056 LINC01590Q5TEZ4 76 aa11.27□□□□□ -0.61
COL6A3-209ENST00000472056 CHAC1Q9BUX1 264 aa11.27□□□□□ -0.61
COL6A3-209ENST00000472056 A0A0G2JMM0 328 aa11.27□□□□□ -0.61
COL6A3-209ENST00000472056 A0A1W2PPB8 328 aa11.27□□□□□ -0.61
COL6A3-209ENST00000472056 KIR3DP1A8MWS1 328 aa11.27□□□□□ -0.61
COL6A3-209ENST00000472056 C1orf185Q5T7R7 199 aa11.27□□□□□ -0.61
COL6A3-209ENST00000472056 PRRC2AP48634 2157 aaKnown RBP11.27□□□□□ -0.61
COL6A3-209ENST00000472056 RNF222A6NCQ9 220 aa11.27□□□□□ -0.61
COL6A3-209ENST00000472056 CFAP161Q6P656 301 aa11.27□□□□□ -0.61
COL6A3-209ENST00000472056 PTPRQQ9UMZ3 2332 aa11.26□□□□□ -0.61
COL6A3-209ENST00000472056 TRAV8-1A0A0A6YYK1 113 aa11.26□□□□□ -0.61
COL6A3-209ENST00000472056 WFDC3Q8IUB2 231 aa11.26□□□□□ -0.61
COL6A3-209ENST00000472056 ZNF415Q09FC8 603 aa11.26□□□□□ -0.61
COL6A3-209ENST00000472056 HCP5Q6MZN7 132 aa11.26□□□□□ -0.61
COL6A3-209ENST00000472056 KLF4O43474 513 aa11.26□□□□□ -0.61
COL6A3-209ENST00000472056 NDUFS6O75380 124 aaKnown RBP11.26□□□□□ -0.61
COL6A3-209ENST00000472056 MOSP00540 346 aa11.26□□□□□ -0.61
COL6A3-209ENST00000472056 SIGLEC14Q08ET2 396 aa11.26□□□□□ -0.61
COL6A3-209ENST00000472056 RPRMLQ8N4K4 120 aa11.26□□□□□ -0.61
COL6A3-209ENST00000472056 TTTY12Q9BZ98 90 aa11.26□□□□□ -0.61
COL6A3-209ENST00000472056 TMEM8BA6NDV4 472 aa11.26□□□□□ -0.61
COL6A3-209ENST00000472056 FNDC10F2Z333 226 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms