RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	RPL5	P46777	297 aa	Known RBP	1.05	□□□□□ -2.24
PTCD3-209	ENST00000472044	CDK5R1	Q15078	307 aa		1.05	□□□□□ -2.24
PTCD3-209	ENST00000472044	RGS21	Q2M5E4	152 aa		1.05	□□□□□ -2.24
PTCD3-209	ENST00000472044	LPCAT3	Q6P1A2	487 aa		1.05	□□□□□ -2.24
PTCD3-209	ENST00000472044	ZNF826P	Q6ZT77	177 aa		1.05	□□□□□ -2.24
PTCD3-209	ENST00000472044	DEFB128	Q7Z7B8	93 aa		1.05	□□□□□ -2.24
PTCD3-209	ENST00000472044	TOMM6	Q96B49	74 aa		1.05	□□□□□ -2.24
PTCD3-209	ENST00000472044	PPP1R2P1	Q96PQ5	205 aa		1.05	□□□□□ -2.24
PTCD3-209	ENST00000472044	TSPAN32	Q96QS1	320 aa		1.05	□□□□□ -2.24
PTCD3-209	ENST00000472044	CKLF	Q9UBR5	152 aa		1.05	□□□□□ -2.24
PTCD3-209	ENST00000472044	TMEM56-RWDD3	S4R434	201 aa		1.05	□□□□□ -2.24
PTCD3-209	ENST00000472044	NEO1	Q92859	1461 aa		1.05	□□□□□ -2.24
PTCD3-209	ENST00000472044	DIDO1	Q9BTC0	2240 aa	Known RBP	1.04	□□□□□ -2.24
PTCD3-209	ENST00000472044	DPRX	A6NFQ7	191 aa		1.04	□□□□□ -2.24
PTCD3-209	ENST00000472044	CLDN24	A6NM45	220 aa		1.04	□□□□□ -2.24
PTCD3-209	ENST00000472044	KPNA3	O00505	521 aa	Predicted RBP	1.04	□□□□□ -2.24
PTCD3-209	ENST00000472044	IFNA10	P01566	189 aa		1.04	□□□□□ -2.24
PTCD3-209	ENST00000472044	HTR1A	P08908	422 aa		1.04	□□□□□ -2.24
PTCD3-209	ENST00000472044	RNASE3	P12724	160 aa	Known RBP	1.04	□□□□□ -2.24
PTCD3-209	ENST00000472044	OMP	P47874	163 aa		1.04	□□□□□ -2.24
PTCD3-209	ENST00000472044	RUNX1	Q01196	453 aa		1.04	□□□□□ -2.24
PTCD3-209	ENST00000472044	ZNF846	Q147U1	533 aa		1.04	□□□□□ -2.24
PTCD3-209	ENST00000472044	LCN15	Q6UWW0	184 aa		1.04	□□□□□ -2.24
PTCD3-209	ENST00000472044	AAED1	Q7RTV5	226 aa		1.04	□□□□□ -2.24
PTCD3-209	ENST00000472044	CLDN22	Q8N7P3	220 aa		1.04	□□□□□ -2.24
PTCD3-209	ENST00000472044	C15orf53	Q8NAA6	179 aa		1.04	□□□□□ -2.24
PTCD3-209	ENST00000472044	TERB2	Q8NHR7	220 aa		1.04	□□□□□ -2.24
PTCD3-209	ENST00000472044	C20orf27	Q9GZN8	174 aa		1.04	□□□□□ -2.24
PTCD3-209	ENST00000472044	PKIG	Q9Y2B9	76 aa		1.04	□□□□□ -2.24
PTCD3-209	ENST00000472044	TTC21A	Q8NDW8	1320 aa		1.04	□□□□□ -2.24
PTCD3-209	ENST00000472044	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	1.04	□□□□□ -2.24
PTCD3-209	ENST00000472044	HECW1	Q76N89	1606 aa		1.04	□□□□□ -2.24
PTCD3-209	ENST00000472044	TNRC6B	Q9UPQ9	1833 aa	Known RBP	1.03	□□□□□ -2.24
PTCD3-209	ENST00000472044	POLE	Q07864	2286 aa		1.03	□□□□□ -2.24
PTCD3-209	ENST00000472044	EXOC1L	A0A1B0GW35	172 aa		1.03	□□□□□ -2.24
PTCD3-209	ENST00000472044	FUOM	A2VDF0	154 aa		1.03	□□□□□ -2.24
PTCD3-209	ENST00000472044	HCRT	O43612	131 aa		1.03	□□□□□ -2.24
PTCD3-209	ENST00000472044	TTR	P02766	147 aa		1.03	□□□□□ -2.24
PTCD3-209	ENST00000472044	UBB	P0CG47	229 aa		1.03	□□□□□ -2.24
PTCD3-209	ENST00000472044	RPS20	P60866	119 aa	Known RBP	1.03	□□□□□ -2.24
PTCD3-209	ENST00000472044	KCNJ8	Q15842	424 aa		1.03	□□□□□ -2.24
PTCD3-209	ENST00000472044	MIR17HG	Q75NE6	70 aa		1.03	□□□□□ -2.24
PTCD3-209	ENST00000472044	OR4D11	Q8NGI4	311 aa		1.03	□□□□□ -2.24
PTCD3-209	ENST00000472044	H1FX	Q92522	213 aa	Known RBP	1.03	□□□□□ -2.24
PTCD3-209	ENST00000472044	DCUN1D1	Q96GG9	259 aa		1.03	□□□□□ -2.24
PTCD3-209	ENST00000472044	CCDC42	Q96M95	316 aa		1.03	□□□□□ -2.24
PTCD3-209	ENST00000472044	C11orf68	Q9H3H3	251 aa	Known RBP	1.03	□□□□□ -2.24
PTCD3-209	ENST00000472044	NCOA1	Q15788	1441 aa		1.03	□□□□□ -2.24
PTCD3-209	ENST00000472044	RIC1	Q4ADV7	1423 aa		1.03	□□□□□ -2.24
PTCD3-209	ENST00000472044	DENND4C	Q5VZ89	1909 aa		1.03	□□□□□ -2.25
PTCD3-209	ENST00000472044	OR4C46	A6NHA9	309 aa		1.02	□□□□□ -2.25
PTCD3-209	ENST00000472044	TMEM212	A6NML5	194 aa		1.02	□□□□□ -2.25
PTCD3-209	ENST00000472044	OR5F1	O95221	314 aa		1.02	□□□□□ -2.25
PTCD3-209	ENST00000472044	SBF1	O95248	1867 aa		1.02	□□□□□ -2.25
PTCD3-209	ENST00000472044	SHBG	P04278	402 aa		1.02	□□□□□ -2.25
PTCD3-209	ENST00000472044	CTSD	P07339	412 aa	Predicted RBP	1.02	□□□□□ -2.25
PTCD3-209	ENST00000472044	COX6A1	P12074	109 aa		1.02	□□□□□ -2.25
PTCD3-209	ENST00000472044	CEBPG	P53567	150 aa		1.02	□□□□□ -2.25
PTCD3-209	ENST00000472044	SPOPL	Q6IQ16	392 aa		1.02	□□□□□ -2.25
PTCD3-209	ENST00000472044	UNQ6493/PRO21345	Q6UXR8	122 aa	Predicted RBP	1.02	□□□□□ -2.25
PTCD3-209	ENST00000472044	EML6	Q6ZMW3	1958 aa		1.02	□□□□□ -2.25
PTCD3-209	ENST00000472044	ANKRD29	Q8N6D5	301 aa		1.02	□□□□□ -2.25
PTCD3-209	ENST00000472044	C12orf29	Q8N999	325 aa		1.02	□□□□□ -2.25
PTCD3-209	ENST00000472044	WFDC11	Q8NEX6	87 aa		1.02	□□□□□ -2.25
PTCD3-209	ENST00000472044	C8orf76	Q96K31	380 aa		1.02	□□□□□ -2.25
PTCD3-209	ENST00000472044	REG4	Q9BYZ8	158 aa		1.02	□□□□□ -2.25
PTCD3-209	ENST00000472044	MIXL1	Q9H2W2	232 aa		1.02	□□□□□ -2.25
PTCD3-209	ENST00000472044	MYO3B	Q8WXR4	1341 aa		1.01	□□□□□ -2.25
PTCD3-209	ENST00000472044	TRAV9-1	A0A075B6T8	112 aa		1.01	□□□□□ -2.25
PTCD3-209	ENST00000472044	TRAV26-2	A0A0B4J265	109 aa		1.01	□□□□□ -2.25
PTCD3-209	ENST00000472044		A0A0D9SG52	128 aa		1.01	□□□□□ -2.25
PTCD3-209	ENST00000472044	BUB1B-PAK6	H3BSN5	160 aa		1.01	□□□□□ -2.25
PTCD3-209	ENST00000472044	SMIM10L2A	P0DMW4	78 aa		1.01	□□□□□ -2.25
PTCD3-209	ENST00000472044	SMIM10L2B	P0DMW5	78 aa		1.01	□□□□□ -2.25
PTCD3-209	ENST00000472044	SURF2	Q15527	256 aa	Predicted RBP	1.01	□□□□□ -2.25
PTCD3-209	ENST00000472044		Q6ZQT0	140 aa		1.01	□□□□□ -2.25
PTCD3-209	ENST00000472044	TRAPPC5	Q8IUR0	188 aa		1.01	□□□□□ -2.25
PTCD3-209	ENST00000472044	ZNF565	Q8N9K5	539 aa		1.01	□□□□□ -2.25
PTCD3-209	ENST00000472044	SERPINI1	Q99574	410 aa		1.01	□□□□□ -2.25
PTCD3-209	ENST00000472044	OR5AC2	Q9NZP5	309 aa		1.01	□□□□□ -2.25
PTCD3-209	ENST00000472044	CACNA1B	Q00975	2339 aa		1.01	□□□□□ -2.25
PTCD3-209	ENST00000472044	TECTA	O75443	2155 aa		1.01	□□□□□ -2.25
PTCD3-209	ENST00000472044	ROS1	P08922	2347 aa		1	□□□□□ -2.25
PTCD3-209	ENST00000472044	ROBO3	Q96MS0	1386 aa		1	□□□□□ -2.25
PTCD3-209	ENST00000472044	IGKV1D-42	A0A075B6H8	117 aa		1	□□□□□ -2.25
PTCD3-209	ENST00000472044	GOLGA6L19	H0YKK7	550 aa		1	□□□□□ -2.25
PTCD3-209	ENST00000472044	C19orf84	I3L1E1	186 aa		1	□□□□□ -2.25
PTCD3-209	ENST00000472044	RPP14	O95059	124 aa	Known RBP	1	□□□□□ -2.25
PTCD3-209	ENST00000472044	LYPLA2	O95372	231 aa		1	□□□□□ -2.25
PTCD3-209	ENST00000472044	CDC42	P60953	191 aa		1	□□□□□ -2.25
PTCD3-209	ENST00000472044	RAN	P62826	216 aa	Known RBP	1	□□□□□ -2.25
PTCD3-209	ENST00000472044	PLCXD2	Q0VAA5	305 aa		1	□□□□□ -2.25
PTCD3-209	ENST00000472044	IAH1	Q2TAA2	248 aa	Predicted RBP	1	□□□□□ -2.25
PTCD3-209	ENST00000472044	CLVS1	Q8IUQ0	354 aa	Predicted RBP	1	□□□□□ -2.25
PTCD3-209	ENST00000472044	AQP3	Q92482	292 aa		1	□□□□□ -2.25
PTCD3-209	ENST00000472044	TMEM147	Q9BVK8	224 aa		1	□□□□□ -2.25
PTCD3-209	ENST00000472044	ULBP3	Q9BZM4	244 aa		1	□□□□□ -2.25
PTCD3-209	ENST00000472044	CTNNBIP1	Q9NSA3	81 aa	Predicted RBP	1	□□□□□ -2.25
PTCD3-209	ENST00000472044	ERGIC3	Q9Y282	383 aa		1	□□□□□ -2.25
PTCD3-209	ENST00000472044	PIK3C2G	O75747	1445 aa		0.99	□□□□□ -2.25

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