RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 MUC21A0A140T8X8 626 aa10.17□□□□□ -0.78
CCDC88A-207ENST00000436346 PLA2G10O15496 165 aa10.17□□□□□ -0.78
CCDC88A-207ENST00000436346 AGAP20933 346 aa10.17□□□□□ -0.78
CCDC88A-207ENST00000436346 MUC21Q5SSG8 566 aa10.17□□□□□ -0.78
CCDC88A-207ENST00000436346 PRELID3AQ96N28 172 aa10.17□□□□□ -0.78
CCDC88A-207ENST00000436346 C18orf15Q96N68 181 aa10.17□□□□□ -0.78
CCDC88A-207ENST00000436346 ELF5Q9UKW6 265 aaPredicted RBP10.17□□□□□ -0.78
CCDC88A-207ENST00000436346 TECTAO75443 2155 aa10.17□□□□□ -0.78
CCDC88A-207ENST00000436346 NPIPB13A6NJU9 1138 aa10.17□□□□□ -0.78
CCDC88A-207ENST00000436346 H0YL77 283 aa10.17□□□□□ -0.78
CCDC88A-207ENST00000436346 PEX7O00628 323 aa10.17□□□□□ -0.78
CCDC88A-207ENST00000436346 CRPP02741 224 aa10.17□□□□□ -0.78
CCDC88A-207ENST00000436346 CXCL2P19875 107 aa10.17□□□□□ -0.78
CCDC88A-207ENST00000436346 PAX1P15863 534 aa10.17□□□□□ -0.78
CCDC88A-207ENST00000436346 THBDP07204 575 aa10.17□□□□□ -0.78
CCDC88A-207ENST00000436346 TMEM105Q8N8V8 129 aa10.17□□□□□ -0.78
CCDC88A-207ENST00000436346 EIF3GO75821 320 aaKnown RBP eCLIP10.17□□□□□ -0.78
CCDC88A-207ENST00000436346 NRN1LQ496H8 165 aa10.17□□□□□ -0.78
CCDC88A-207ENST00000436346 NRIP2Q9BQI9 281 aa10.17□□□□□ -0.78
CCDC88A-207ENST00000436346 J3QW42 95 aa10.17□□□□□ -0.78
CCDC88A-207ENST00000436346 NBR2O15453 112 aa10.17□□□□□ -0.78
CCDC88A-207ENST00000436346 NABP2Q9BQ15 211 aa10.17□□□□□ -0.78
CCDC88A-207ENST00000436346 MRPS18AQ9NVS2 196 aaKnown RBP10.17□□□□□ -0.78
CCDC88A-207ENST00000436346 LINC00312Q9Y6C7 94 aa10.17□□□□□ -0.78
CCDC88A-207ENST00000436346 TRBV5-7A0A0A0MS05 114 aa10.17□□□□□ -0.78
CCDC88A-207ENST00000436346 RRHO14718 337 aa10.17□□□□□ -0.78
CCDC88A-207ENST00000436346 KLF4O43474 513 aa10.17□□□□□ -0.78
CCDC88A-207ENST00000436346 C11orf44Q8N8P7 122 aa10.17□□□□□ -0.78
CCDC88A-207ENST00000436346 FHITP49789 147 aa10.17□□□□□ -0.78
CCDC88A-207ENST00000436346 ZNF385CQ66K41 422 aaPredicted RBP10.17□□□□□ -0.78
CCDC88A-207ENST00000436346 OR5AN1Q8NGI8 311 aa10.17□□□□□ -0.78
CCDC88A-207ENST00000436346 CD7P09564 240 aa10.16□□□□□ -0.78
CCDC88A-207ENST00000436346 CTHRC1Q96CG8 243 aa10.16□□□□□ -0.78
CCDC88A-207ENST00000436346 TRGC2P03986 189 aa10.16□□□□□ -0.78
CCDC88A-207ENST00000436346 LHX2P50458 406 aa10.16□□□□□ -0.78
CCDC88A-207ENST00000436346 SAPCD1Q5SSQ6 148 aa10.16□□□□□ -0.78
CCDC88A-207ENST00000436346 C9orf106Q8NAJ2 232 aa10.16□□□□□ -0.78
CCDC88A-207ENST00000436346 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.16□□□□□ -0.78
CCDC88A-207ENST00000436346 TRAV40A0A0B4J280 105 aa10.16□□□□□ -0.78
CCDC88A-207ENST00000436346 RAMP3O60896 148 aa10.16□□□□□ -0.78
CCDC88A-207ENST00000436346 C11orf68Q9H3H3 251 aaKnown RBP10.16□□□□□ -0.78
CCDC88A-207ENST00000436346 METRNQ9UJH8 293 aa10.16□□□□□ -0.78
CCDC88A-207ENST00000436346 TCF21O43680 179 aa10.16□□□□□ -0.78
CCDC88A-207ENST00000436346 FAM71F2Q6NXP2 309 aa10.16□□□□□ -0.78
CCDC88A-207ENST00000436346 TMEM250H0YL14 139 aa10.16□□□□□ -0.78
CCDC88A-207ENST00000436346 OR10J3Q5JRS4 329 aa10.16□□□□□ -0.78
CCDC88A-207ENST00000436346 TMEM252Q8N6L7 170 aa10.16□□□□□ -0.78
CCDC88A-207ENST00000436346 RPRMQ9NS64 109 aa10.16□□□□□ -0.78
CCDC88A-207ENST00000436346 GCHFRP30047 84 aa10.16□□□□□ -0.78
CCDC88A-207ENST00000436346 TRBV9A0A0B4J1U6 114 aa10.16□□□□□ -0.78
CCDC88A-207ENST00000436346 GRIFINA4D1Z8 144 aa10.16□□□□□ -0.78
CCDC88A-207ENST00000436346 BIVMQ86UB2 503 aa10.16□□□□□ -0.78
CCDC88A-207ENST00000436346 TFF3Q07654 80 aa10.15□□□□□ -0.78
CCDC88A-207ENST00000436346 TEX45Q8NA69 505 aa10.15□□□□□ -0.78
CCDC88A-207ENST00000436346 RAMP1O60894 148 aa10.15□□□□□ -0.78
CCDC88A-207ENST00000436346 SRD5A1P18405 259 aa10.15□□□□□ -0.78
CCDC88A-207ENST00000436346 IFI6P09912 130 aa10.15□□□□□ -0.78
CCDC88A-207ENST00000436346 PLP1P60201 277 aa10.15□□□□□ -0.78
CCDC88A-207ENST00000436346 CBLN1P23435 193 aa10.15□□□□□ -0.78
CCDC88A-207ENST00000436346 CD24P25063 80 aa10.15□□□□□ -0.78
CCDC88A-207ENST00000436346 APCDD1LQ8NCL9 501 aa10.15□□□□□ -0.78
CCDC88A-207ENST00000436346 IGKV3D-20A0A0C4DH25 116 aa10.15□□□□□ -0.79
CCDC88A-207ENST00000436346 TMEM187Q14656 261 aa10.15□□□□□ -0.79
CCDC88A-207ENST00000436346 OSR1Q8TAX0 266 aaPredicted RBP10.15□□□□□ -0.79
CCDC88A-207ENST00000436346 TRAV24A0A0B4J272 114 aa10.15□□□□□ -0.79
CCDC88A-207ENST00000436346 C17orf100A8MU93 164 aa10.15□□□□□ -0.79
CCDC88A-207ENST00000436346 NDUFA3O95167 84 aa10.15□□□□□ -0.79
CCDC88A-207ENST00000436346 UMODP07911 640 aa10.15□□□□□ -0.79
CCDC88A-207ENST00000436346 CNTFRP26992 372 aa10.15□□□□□ -0.79
CCDC88A-207ENST00000436346 OR13A1Q8NGR1 328 aa10.14□□□□□ -0.79
CCDC88A-207ENST00000436346 OR1P1Q8NH06 330 aa10.14□□□□□ -0.79
CCDC88A-207ENST00000436346 OR11H4Q8NGC9 324 aa10.14□□□□□ -0.79
CCDC88A-207ENST00000436346 A0A1W2PR77 199 aa10.14□□□□□ -0.79
CCDC88A-207ENST00000436346 SMIM10L1P0DMW3 83 aa10.14□□□□□ -0.79
CCDC88A-207ENST00000436346 EGR4Q05215 589 aa10.14□□□□□ -0.79
CCDC88A-207ENST00000436346 SMIM10Q96HG1 83 aa10.14□□□□□ -0.79
CCDC88A-207ENST00000436346 CXorf65A6NEN9 183 aa10.14□□□□□ -0.79
CCDC88A-207ENST00000436346 SAA1P0DJI8 122 aaPredicted RBP10.14□□□□□ -0.79
CCDC88A-207ENST00000436346 ZNF415Q09FC8 603 aa10.14□□□□□ -0.79
CCDC88A-207ENST00000436346 C1orf100Q5SVJ3 147 aa10.14□□□□□ -0.79
CCDC88A-207ENST00000436346 BEND2Q8NDZ0 799 aa10.14□□□□□ -0.79
CCDC88A-207ENST00000436346 SPRR3Q9UBC9 169 aa10.14□□□□□ -0.79
CCDC88A-207ENST00000436346 LINC00862A6NCI5 91 aa10.14□□□□□ -0.79
CCDC88A-207ENST00000436346 Q9H3A6 140 aa10.14□□□□□ -0.79
CCDC88A-207ENST00000436346 SPTBN4Q9H254 2564 aa10.14□□□□□ -0.79
CCDC88A-207ENST00000436346 FAM90A1Q86YD7 464 aa10.14□□□□□ -0.79
CCDC88A-207ENST00000436346 LRTM2Q8N967 370 aa10.14□□□□□ -0.79
CCDC88A-207ENST00000436346 KIAA1644Q3SXP7 199 aa10.14□□□□□ -0.79
CCDC88A-207ENST00000436346 WDYHV1Q96HA8 205 aa10.14□□□□□ -0.79
CCDC88A-207ENST00000436346 C1QTNF5Q9BXJ0 243 aa10.14□□□□□ -0.79
CCDC88A-207ENST00000436346 ALX4Q9H161 411 aaPredicted RBP10.14□□□□□ -0.79
CCDC88A-207ENST00000436346 UQCR10Q9UDW1 63 aa10.14□□□□□ -0.79
CCDC88A-207ENST00000436346 ZNF688P0C7X2 276 aa10.13□□□□□ -0.79
CCDC88A-207ENST00000436346 SLC25A38Q96DW6 304 aa10.13□□□□□ -0.79
CCDC88A-207ENST00000436346 WNT10AQ9GZT5 417 aa10.13□□□□□ -0.79
CCDC88A-207ENST00000436346 PQLC2LA1A4F0 135 aa10.13□□□□□ -0.79
CCDC88A-207ENST00000436346 SCGB3A1Q96QR1 104 aa10.13□□□□□ -0.79
CCDC88A-207ENST00000436346 PRSS22Q9GZN4 317 aa10.13□□□□□ -0.79
CCDC88A-207ENST00000436346 PLSCR2Q9NRY7 297 aa10.13□□□□□ -0.79
CCDC88A-207ENST00000436346 COL5A1P20908 1838 aaPredicted RBP10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms