RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 ONECUT1Q9UBC0 465 aa6.82□□□□□ -1.32
CD44-208ENST00000428726 PXMP4Q9Y6I8 212 aa6.82□□□□□ -1.32
CD44-208ENST00000428726 IGKV1OR2-108A0A075B7D4 117 aa6.81□□□□□ -1.32
CD44-208ENST00000428726 SCO2A0A1W2PP80 73 aa6.81□□□□□ -1.32
CD44-208ENST00000428726 ZNF320A2RRD8 509 aa6.81□□□□□ -1.32
CD44-208ENST00000428726 FAM90A9PA6NNJ1 464 aa6.81□□□□□ -1.32
CD44-208ENST00000428726 TSTD3H0UI37 97 aa6.81□□□□□ -1.32
CD44-208ENST00000428726 F2RL2O00254 374 aa6.81□□□□□ -1.32
CD44-208ENST00000428726 IGHV3-23P01764 117 aa6.81□□□□□ -1.32
CD44-208ENST00000428726 MBP02144 154 aa6.81□□□□□ -1.32
CD44-208ENST00000428726 GATA4P43694 442 aa6.81□□□□□ -1.32
CD44-208ENST00000428726 RPL23P62829 140 aaKnown RBP6.81□□□□□ -1.32
CD44-208ENST00000428726 MEF2BQ02080 365 aaPredicted RBP6.81□□□□□ -1.32
CD44-208ENST00000428726 ZNF90Q03938 601 aa6.81□□□□□ -1.32
CD44-208ENST00000428726 TMEM241Q24JQ0 296 aa6.81□□□□□ -1.32
CD44-208ENST00000428726 TDRG1Q3Y452 100 aa6.81□□□□□ -1.32
CD44-208ENST00000428726 FBLN7Q53RD9 439 aa6.81□□□□□ -1.32
CD44-208ENST00000428726 MRGPRGQ86SM5 289 aa6.81□□□□□ -1.32
CD44-208ENST00000428726 MTORP42345 2549 aa6.81□□□□□ -1.32
CD44-208ENST00000428726 B4DEV8 164 aa6.81□□□□□ -1.32
CD44-208ENST00000428726 CA1P00915 261 aaPredicted RBP6.81□□□□□ -1.32
CD44-208ENST00000428726 GZMBP10144 247 aa6.81□□□□□ -1.32
CD44-208ENST00000428726 NBL1P41271 181 aa6.81□□□□□ -1.32
CD44-208ENST00000428726 FXYD3Q14802 87 aa6.81□□□□□ -1.32
CD44-208ENST00000428726 ZNF788Q6ZQV5 615 aa6.81□□□□□ -1.32
CD44-208ENST00000428726 NAV2Q8IVL1 2488 aa6.81□□□□□ -1.32
CD44-208ENST00000428726 BLNKQ8WV28 456 aa6.81□□□□□ -1.32
CD44-208ENST00000428726 OR5B12Q96R08 314 aa6.81□□□□□ -1.32
CD44-208ENST00000428726 IDI2-AS1Q9NZ38 188 aa6.81□□□□□ -1.32
CD44-208ENST00000428726 IL19Q9UHD0 177 aa6.81□□□□□ -1.32
CD44-208ENST00000428726 VAX2Q9UIW0 290 aa6.81□□□□□ -1.32
CD44-208ENST00000428726 TRAV34A0A0B4J273 112 aa6.8□□□□□ -1.32
CD44-208ENST00000428726 ZNF705FA8MVS1 300 aaPredicted RBP6.8□□□□□ -1.32
CD44-208ENST00000428726 EREGO14944 169 aa6.8□□□□□ -1.32
CD44-208ENST00000428726 RBFOX2O43251 390 aaKnown RBP eCLIP6.8□□□□□ -1.32
CD44-208ENST00000428726 NDUFB3O43676 98 aa6.8□□□□□ -1.32
CD44-208ENST00000428726 ZNF705DP0CH99 300 aaPredicted RBP6.8□□□□□ -1.32
CD44-208ENST00000428726 ZNF705BP0CI00 300 aaPredicted RBP6.8□□□□□ -1.32
CD44-208ENST00000428726 ORM2P19652 201 aa6.8□□□□□ -1.32
CD44-208ENST00000428726 NPY1RP25929 384 aa6.8□□□□□ -1.32
CD44-208ENST00000428726 OR10J1P30954 320 aa6.8□□□□□ -1.32
CD44-208ENST00000428726 PIP4P2Q8N4L2 257 aa6.8□□□□□ -1.32
CD44-208ENST00000428726 DSCAML1Q8TD84 2053 aa6.8□□□□□ -1.32
CD44-208ENST00000428726 A6NNC1 897 aa6.8□□□□□ -1.32
CD44-208ENST00000428726 FCN1O00602 326 aa6.8□□□□□ -1.32
CD44-208ENST00000428726 ITGB1BP1O14713 200 aa6.8□□□□□ -1.32
CD44-208ENST00000428726 PYYP10082 97 aa6.8□□□□□ -1.32
CD44-208ENST00000428726 RPL29P47914 159 aaKnown RBP6.8□□□□□ -1.32
CD44-208ENST00000428726 PSMB3P49720 205 aa6.8□□□□□ -1.32
CD44-208ENST00000428726 RAB7AP51149 207 aa6.8□□□□□ -1.32
CD44-208ENST00000428726 RPP30P78346 268 aaKnown RBP6.8□□□□□ -1.32
CD44-208ENST00000428726 PNRC1Q12796 327 aaPredicted RBP6.8□□□□□ -1.32
CD44-208ENST00000428726 HES1Q14469 280 aa6.8□□□□□ -1.32
CD44-208ENST00000428726 VWC2Q2TAL6 325 aa6.8□□□□□ -1.32
CD44-208ENST00000428726 AARDQ4LEZ3 155 aa6.8□□□□□ -1.32
CD44-208ENST00000428726 SLC24A4Q8NFF2 622 aa6.8□□□□□ -1.32
CD44-208ENST00000428726 FAM222BQ8WU58 562 aa6.8□□□□□ -1.32
CD44-208ENST00000428726 C1orf159Q96HA4 380 aa6.8□□□□□ -1.32
CD44-208ENST00000428726 ZNF714Q96N38 554 aa6.8□□□□□ -1.32
CD44-208ENST00000428726 SHISA9B4DS77 424 aa6.79□□□□□ -1.32
CD44-208ENST00000428726 C17orf112F2Z3M2 114 aa6.79□□□□□ -1.32
CD44-208ENST00000428726 OR5G3P0C626 314 aa6.79□□□□□ -1.32
CD44-208ENST00000428726 CGB3P0DN86 165 aa6.79□□□□□ -1.32
CD44-208ENST00000428726 CGB7P0DN87 165 aa6.79□□□□□ -1.32
CD44-208ENST00000428726 OPRK1P41145 380 aa6.79□□□□□ -1.32
CD44-208ENST00000428726 KIR2DS2P43631 304 aa6.79□□□□□ -1.32
CD44-208ENST00000428726 PLGLAQ15195 96 aa6.79□□□□□ -1.32
CD44-208ENST00000428726 PSG5Q15238 335 aa6.79□□□□□ -1.32
CD44-208ENST00000428726 KIAA1644Q3SXP7 199 aa6.79□□□□□ -1.32
CD44-208ENST00000428726 PRR27Q6MZM9 219 aa6.79□□□□□ -1.32
CD44-208ENST00000428726 Q71RC1 249 aaPredicted RBP6.79□□□□□ -1.32
CD44-208ENST00000428726 MUC15Q8N387 334 aa6.79□□□□□ -1.32
CD44-208ENST00000428726 STPG3Q8N7X2 389 aa6.79□□□□□ -1.32
CD44-208ENST00000428726 CTXND1A0A1B0GTU2 59 aa6.79□□□□□ -1.32
CD44-208ENST00000428726 TMEM178BH3BS89 294 aa6.79□□□□□ -1.32
CD44-208ENST00000428726 K7ENP7 123 aa6.79□□□□□ -1.32
CD44-208ENST00000428726 AREGP15514 252 aa6.79□□□□□ -1.32
CD44-208ENST00000428726 SPCS3P61009 180 aa6.79□□□□□ -1.32
CD44-208ENST00000428726 TNXAQ16473 311 aa6.79□□□□□ -1.32
CD44-208ENST00000428726 OR52E5Q8NH55 327 aa6.79□□□□□ -1.32
CD44-208ENST00000428726 OR4S2Q8NH73 311 aa6.79□□□□□ -1.32
CD44-208ENST00000428726 EAF1Q96JC9 268 aaPredicted RBP6.79□□□□□ -1.32
CD44-208ENST00000428726 ACTR3CQ9C0K3 210 aaPredicted RBP6.79□□□□□ -1.32
CD44-208ENST00000428726 COMMD5Q9GZQ3 224 aa6.79□□□□□ -1.32
CD44-208ENST00000428726 FBXL15Q9H469 300 aa6.79□□□□□ -1.32
CD44-208ENST00000428726 PLEKHA3Q9HB20 300 aa6.79□□□□□ -1.32
CD44-208ENST00000428726 IGHV1-69-2A0A0G2JMI3 117 aa6.79□□□□□ -1.32
CD44-208ENST00000428726 TEX50A0A1B0GTY4 177 aa6.79□□□□□ -1.32
CD44-208ENST00000428726 A0A1W2PPR1 153 aa6.79□□□□□ -1.32
CD44-208ENST00000428726 F2Z2F3 143 aa6.79□□□□□ -1.32
CD44-208ENST00000428726 TNFRSF1AP19438 455 aa6.79□□□□□ -1.32
CD44-208ENST00000428726 NHLH1Q02575 133 aa6.79□□□□□ -1.32
CD44-208ENST00000428726 ZNF439Q8NDP4 499 aa6.79□□□□□ -1.32
CD44-208ENST00000428726 OR1P1Q8NH06 330 aa6.79□□□□□ -1.32
CD44-208ENST00000428726 NPIPB3Q92617 1050 aa6.79□□□□□ -1.32
CD44-208ENST00000428726 GGTLC1Q9BX51 225 aa6.79□□□□□ -1.32
CD44-208ENST00000428726 YTHDF2Q9Y5A9 579 aaKnown RBP6.79□□□□□ -1.32
CD44-208ENST00000428726 TRBV20OR9-2A0A075B6H5 130 aa6.78□□□□□ -1.32
CD44-208ENST00000428726 hADV38S2A0JD32 116 aa6.78□□□□□ -1.32
CD44-208ENST00000428726 IL6RP08887 468 aaPredicted RBP6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms