RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 GAGE12IP0CL82 117 aa10.97□□□□□ -0.65
COL6A3-206ENST00000409809 GAGE4Q13068 117 aa10.97□□□□□ -0.65
COL6A3-206ENST00000409809 GFRA4Q9GZZ7 299 aa10.97□□□□□ -0.65
COL6A3-206ENST00000409809 KLK15Q9H2R5 256 aa10.97□□□□□ -0.65
COL6A3-206ENST00000409809 SCO2A0A1W2PP80 73 aa10.97□□□□□ -0.65
COL6A3-206ENST00000409809 NPIPB11E5RHQ5 1161 aa10.97□□□□□ -0.65
COL6A3-206ENST00000409809 OR2H2O95918 312 aa10.97□□□□□ -0.65
COL6A3-206ENST00000409809 MESP2Q0VG99 397 aa10.97□□□□□ -0.65
COL6A3-206ENST00000409809 HELZP42694 1942 aaKnown RBP10.96□□□□□ -0.65
COL6A3-206ENST00000409809 PSMB11A5LHX3 300 aa10.96□□□□□ -0.65
COL6A3-206ENST00000409809 SCTP09683 121 aa10.96□□□□□ -0.65
COL6A3-206ENST00000409809 RTP5Q14D33 572 aa10.96□□□□□ -0.65
COL6A3-206ENST00000409809 TMEM155Q4W5P6 130 aa10.96□□□□□ -0.65
COL6A3-206ENST00000409809 ST6GALNAC6Q969X2 333 aa10.96□□□□□ -0.65
COL6A3-206ENST00000409809 C9orf118A6NHY6 69 aa10.96□□□□□ -0.65
COL6A3-206ENST00000409809 FCN3O75636 299 aa10.96□□□□□ -0.65
COL6A3-206ENST00000409809 LIFP15018 202 aa10.96□□□□□ -0.65
COL6A3-206ENST00000409809 PTCRAQ6ISU1 281 aaPredicted RBP10.96□□□□□ -0.65
COL6A3-206ENST00000409809 ST6GALNAC3Q8NDV1 305 aa10.96□□□□□ -0.65
COL6A3-206ENST00000409809 A6NNC1 897 aa10.96□□□□□ -0.65
COL6A3-206ENST00000409809 SYS1-DBNDD2H3BUS1 97 aa10.96□□□□□ -0.65
COL6A3-206ENST00000409809 ZG16O60844 167 aa10.96□□□□□ -0.65
COL6A3-206ENST00000409809 CTGFP29279 349 aa10.96□□□□□ -0.66
COL6A3-206ENST00000409809 Q0VG73 95 aa10.96□□□□□ -0.66
COL6A3-206ENST00000409809 TICRRQ7Z2Z1 1910 aa10.96□□□□□ -0.66
COL6A3-206ENST00000409809 NAPSAO96009 420 aa10.96□□□□□ -0.66
COL6A3-206ENST00000409809 PSG1P11464 419 aa10.96□□□□□ -0.66
COL6A3-206ENST00000409809 COX7A1P24310 79 aa10.96□□□□□ -0.66
COL6A3-206ENST00000409809 OR9G1Q8NH87 305 aa10.96□□□□□ -0.66
COL6A3-206ENST00000409809 C18orf12Q96KH6 178 aa10.96□□□□□ -0.66
COL6A3-206ENST00000409809 VKORC1Q9BQB6 163 aa10.96□□□□□ -0.66
COL6A3-206ENST00000409809 SLC50A1Q9BRV3 221 aa10.96□□□□□ -0.66
COL6A3-206ENST00000409809 PRKNO60260 465 aaPredicted RBP10.96□□□□□ -0.66
COL6A3-206ENST00000409809 SEMA5BQ9P283 1151 aa10.96□□□□□ -0.66
COL6A3-206ENST00000409809 PRRT4C9JH25 899 aa10.95□□□□□ -0.66
COL6A3-206ENST00000409809 H3BMM0 161 aa10.95□□□□□ -0.66
COL6A3-206ENST00000409809 GFERP55789 205 aa10.95□□□□□ -0.66
COL6A3-206ENST00000409809 DEFB103AP81534 67 aa10.95□□□□□ -0.66
COL6A3-206ENST00000409809 UBE2WQ96B02 151 aa10.95□□□□□ -0.66
COL6A3-206ENST00000409809 SSBP3Q9BWW4 388 aaPredicted RBP10.95□□□□□ -0.66
COL6A3-206ENST00000409809 GAGE5Q13069 117 aa10.95□□□□□ -0.66
COL6A3-206ENST00000409809 GAGE6Q13070 117 aa10.95□□□□□ -0.66
COL6A3-206ENST00000409809 TFPI2P48307 235 aa10.95□□□□□ -0.66
COL6A3-206ENST00000409809 SLC25A39Q9BZJ4 359 aaPredicted RBP10.95□□□□□ -0.66
COL6A3-206ENST00000409809 C21orf140B9A014 251 aa10.95□□□□□ -0.66
COL6A3-206ENST00000409809 CD3EP07766 207 aa10.95□□□□□ -0.66
COL6A3-206ENST00000409809 TMEM144Q7Z5S9 345 aa10.95□□□□□ -0.66
COL6A3-206ENST00000409809 EEF1AKMT3Q96AZ1 226 aa10.95□□□□□ -0.66
COL6A3-206ENST00000409809 NPFFR1Q9GZQ6 430 aa10.95□□□□□ -0.66
COL6A3-206ENST00000409809 DMRTC1Q5HYR2 192 aa10.95□□□□□ -0.66
COL6A3-206ENST00000409809 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.95□□□□□ -0.66
COL6A3-206ENST00000409809 PLPPR2Q96GM1 343 aa10.95□□□□□ -0.66
COL6A3-206ENST00000409809 RASL10BQ96S79 203 aa10.95□□□□□ -0.66
COL6A3-206ENST00000409809 BTCP35070 178 aa10.94□□□□□ -0.66
COL6A3-206ENST00000409809 ZXDCQ2QGD7 858 aaPredicted RBP10.94□□□□□ -0.66
COL6A3-206ENST00000409809 LINC01545Q5VT33 79 aa10.94□□□□□ -0.66
COL6A3-206ENST00000409809 ZNF525Q8N782 197 aa10.94□□□□□ -0.66
COL6A3-206ENST00000409809 TANC2Q9HCD6 1990 aa10.94□□□□□ -0.66
COL6A3-206ENST00000409809 ARHGAP21Q5T5U3 1957 aa10.94□□□□□ -0.66
COL6A3-206ENST00000409809 IGLV1-36A0A0B4J1U3 117 aa10.94□□□□□ -0.66
COL6A3-206ENST00000409809 A0A0G2JMZ2 1700 aa10.94□□□□□ -0.66
COL6A3-206ENST00000409809 LRRC37A2A6NM11 1700 aa10.94□□□□□ -0.66
COL6A3-206ENST00000409809 LRRC37AA6NMS7 1700 aa10.94□□□□□ -0.66
COL6A3-206ENST00000409809 A0A1W2PR80 420 aa10.94□□□□□ -0.66
COL6A3-206ENST00000409809 ZSWIM8A7E2V4 1837 aa10.94□□□□□ -0.66
COL6A3-206ENST00000409809 PLXND1Q9Y4D7 1925 aa10.94□□□□□ -0.66
COL6A3-206ENST00000409809 NXPH1P58417 271 aa10.94□□□□□ -0.66
COL6A3-206ENST00000409809 GUSBP1Q15486 140 aa10.94□□□□□ -0.66
COL6A3-206ENST00000409809 C6orf106Q9H6K1 298 aaPredicted RBP10.94□□□□□ -0.66
COL6A3-206ENST00000409809 GREB1LQ9C091 1923 aaPredicted RBP10.94□□□□□ -0.66
COL6A3-206ENST00000409809 GAGE12HA6NDE8 117 aa10.94□□□□□ -0.66
COL6A3-206ENST00000409809 IGHG4P01861 327 aa10.94□□□□□ -0.66
COL6A3-206ENST00000409809 NPPCP23582 126 aa10.94□□□□□ -0.66
COL6A3-206ENST00000409809 RTBDNQ9BSG5 229 aaPredicted RBP10.94□□□□□ -0.66
COL6A3-206ENST00000409809 K7EP13 123 aa10.94□□□□□ -0.66
COL6A3-206ENST00000409809 K7EP34 96 aa10.94□□□□□ -0.66
COL6A3-206ENST00000409809 ACYP1P07311 99 aa10.94□□□□□ -0.66
COL6A3-206ENST00000409809 CALYQ9NYX4 217 aa10.94□□□□□ -0.66
COL6A3-206ENST00000409809 TET1Q8NFU7 2136 aa10.93□□□□□ -0.66
COL6A3-206ENST00000409809 RNF126Q9BV68 326 aa10.93□□□□□ -0.66
COL6A3-206ENST00000409809 SBF1O95248 1867 aa10.93□□□□□ -0.66
COL6A3-206ENST00000409809 CGAP01215 116 aa10.93□□□□□ -0.66
COL6A3-206ENST00000409809 PCSK4Q6UW60 755 aa10.93□□□□□ -0.66
COL6A3-206ENST00000409809 IFI27L2Q9H2X8 130 aa10.93□□□□□ -0.66
COL6A3-206ENST00000409809 FRMPD3Q5JV73 1810 aa10.93□□□□□ -0.66
COL6A3-206ENST00000409809 ATXN7O15265 892 aaPredicted RBP10.93□□□□□ -0.66
COL6A3-206ENST00000409809 SPINT1O43278 529 aa10.93□□□□□ -0.66
COL6A3-206ENST00000409809 LOXL3P58215 753 aa10.93□□□□□ -0.66
COL6A3-206ENST00000409809 TPRX1Q8N7U7 411 aa10.93□□□□□ -0.66
COL6A3-206ENST00000409809 ZNF576Q9H609 170 aa10.93□□□□□ -0.66
COL6A3-206ENST00000409809 VWC2LB2RUY7 222 aa10.93□□□□□ -0.66
COL6A3-206ENST00000409809 SLC25A47Q6Q0C1 308 aa10.93□□□□□ -0.66
COL6A3-206ENST00000409809 H0Y8X5 98 aa10.93□□□□□ -0.66
COL6A3-206ENST00000409809 J3KT08 172 aa10.93□□□□□ -0.66
COL6A3-206ENST00000409809 IGFBP3P17936 291 aaPredicted RBP10.93□□□□□ -0.66
COL6A3-206ENST00000409809 ECSCRQ19T08 205 aa10.93□□□□□ -0.66
COL6A3-206ENST00000409809 ASPHD2Q6ICH7 369 aa10.93□□□□□ -0.66
COL6A3-206ENST00000409809 ZNF664Q8N3J9 261 aa10.93□□□□□ -0.66
COL6A3-206ENST00000409809 IGHV1-24A0A0C4DH33 117 aa10.93□□□□□ -0.66
COL6A3-206ENST00000409809 FABP5P3A8MUU1 101 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms