RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 ESDP10768 282 aa17.13■□□□□ 0.33
CTCF-202ENST00000401394 CTRLP40313 264 aa17.13■□□□□ 0.33
CTCF-202ENST00000401394 HSPE1P61604 102 aaKnown RBP17.13■□□□□ 0.33
CTCF-202ENST00000401394 Q0VG73 95 aa17.13■□□□□ 0.33
CTCF-202ENST00000401394 C1orf210Q8IVY1 113 aa17.13■□□□□ 0.33
CTCF-202ENST00000401394 TSKUQ8WUA8 353 aa17.13■□□□□ 0.33
CTCF-202ENST00000401394 PLEKHA3Q9HB20 300 aa17.13■□□□□ 0.33
CTCF-202ENST00000401394 J3QR06 171 aa17.12■□□□□ 0.33
CTCF-202ENST00000401394 AARDQ4LEZ3 155 aa17.12■□□□□ 0.33
CTCF-202ENST00000401394 IBA57Q5T440 356 aaKnown RBP17.12■□□□□ 0.33
CTCF-202ENST00000401394 RUSC1-AS1Q66K80 236 aa17.12■□□□□ 0.33
CTCF-202ENST00000401394 INO80CQ6PI98 192 aaPredicted RBP17.12■□□□□ 0.33
CTCF-202ENST00000401394 UNQ5815/PRO19632Q6UWF5 114 aa17.12■□□□□ 0.33
CTCF-202ENST00000401394 SPATA12Q7Z6I5 190 aa17.12■□□□□ 0.33
CTCF-202ENST00000401394 C1orf174Q8IYL3 243 aa17.12■□□□□ 0.33
CTCF-202ENST00000401394 OR52E5Q8NH55 327 aa17.12■□□□□ 0.33
CTCF-202ENST00000401394 C11orf52Q96A22 123 aa17.12■□□□□ 0.33
CTCF-202ENST00000401394 MCRIP2Q9BUT9 160 aaKnown RBP17.12■□□□□ 0.33
CTCF-202ENST00000401394 SLC45A2Q9UMX9 530 aa17.12■□□□□ 0.33
CTCF-202ENST00000401394 NKX2-8O15522 239 aa17.12■□□□□ 0.33
CTCF-202ENST00000401394 APELAP0DMC3 54 aa17.12■□□□□ 0.33
CTCF-202ENST00000401394 CAMPP49913 170 aa17.12■□□□□ 0.33
CTCF-202ENST00000401394 RPL8P62917 257 aaKnown RBP17.12■□□□□ 0.33
CTCF-202ENST00000401394 GNG5P63218 68 aa17.12■□□□□ 0.33
CTCF-202ENST00000401394 C10orf55Q5SWW7 151 aa17.12■□□□□ 0.33
CTCF-202ENST00000401394 CLEC7AQ9BXN2 247 aa17.12■□□□□ 0.33
CTCF-202ENST00000401394 ENY2Q9NPA8 101 aa17.12■□□□□ 0.33
CTCF-202ENST00000401394 TNXAQ16473 311 aa17.11■□□□□ 0.33
CTCF-202ENST00000401394 PEAR1Q5VY43 1037 aaPredicted RBP17.11■□□□□ 0.33
CTCF-202ENST00000401394 C19orf35Q6ZS72 473 aa17.11■□□□□ 0.33
CTCF-202ENST00000401394 Q71RC1 249 aaPredicted RBP17.11■□□□□ 0.33
CTCF-202ENST00000401394 ZCCHC24Q8N2G6 241 aaKnown RBP17.11■□□□□ 0.33
CTCF-202ENST00000401394 GNB1LQ9BYB4 327 aa17.11■□□□□ 0.33
CTCF-202ENST00000401394 TMEM14BQ9NUH8 114 aa17.11■□□□□ 0.33
CTCF-202ENST00000401394 CLCF1Q9UBD9 225 aa17.11■□□□□ 0.33
CTCF-202ENST00000401394 C9JCJ5 164 aa17.1■□□□□ 0.33
CTCF-202ENST00000401394 AREGP15514 252 aa17.1■□□□□ 0.33
CTCF-202ENST00000401394 PRB3Q04118 309 aaPredicted RBP17.1■□□□□ 0.33
CTCF-202ENST00000401394 TMEM164Q5U3C3 297 aa17.1■□□□□ 0.33
CTCF-202ENST00000401394 FAM216BQ8N7L0 139 aa17.1■□□□□ 0.33
CTCF-202ENST00000401394 JPT1Q9UK76 154 aa17.1■□□□□ 0.33
CTCF-202ENST00000401394 RPH3ALQ9UNE2 315 aa17.1■□□□□ 0.33
CTCF-202ENST00000401394 TIGITQ495A1 244 aa17.1■□□□□ 0.33
CTCF-202ENST00000401394 Q56UQ5 140 aa17.1■□□□□ 0.33
CTCF-202ENST00000401394 RPRMLQ8N4K4 120 aa17.1■□□□□ 0.33
CTCF-202ENST00000401394 TCTEX1D1Q8N7M0 179 aa17.1■□□□□ 0.33
CTCF-202ENST00000401394 ITLN1Q8WWA0 313 aa17.1■□□□□ 0.33
CTCF-202ENST00000401394 KCNS1Q96KK3 526 aa17.1■□□□□ 0.33
CTCF-202ENST00000401394 IL19Q9UHD0 177 aa17.1■□□□□ 0.33
CTCF-202ENST00000401394 ZNF324O75467 553 aaPredicted RBP17.1■□□□□ 0.33
CTCF-202ENST00000401394 IGLC2P0DOY2 106 aa17.1■□□□□ 0.33
CTCF-202ENST00000401394 IGLC3P0DOY3 106 aa17.1■□□□□ 0.33
CTCF-202ENST00000401394 OR4S2Q8NH73 311 aa17.1■□□□□ 0.33
CTCF-202ENST00000401394 DPRXA6NFQ7 191 aa17.09■□□□□ 0.33
CTCF-202ENST00000401394 VWC2LB2RUY7 222 aa17.09■□□□□ 0.33
CTCF-202ENST00000401394 SRRM5B3KS81 715 aa17.09■□□□□ 0.33
CTCF-202ENST00000401394 USF1P22415 310 aaPredicted RBP17.09■□□□□ 0.33
CTCF-202ENST00000401394 NEUROG1Q92886 237 aa17.09■□□□□ 0.33
CTCF-202ENST00000401394 CCL13Q99616 98 aa17.09■□□□□ 0.33
CTCF-202ENST00000401394 TTC28Q96AY4 2481 aa17.09■□□□□ 0.33
CTCF-202ENST00000401394 M0QZK8 103 aa17.09■□□□□ 0.33
CTCF-202ENST00000401394 C22orf34Q6ZV56 151 aa17.09■□□□□ 0.33
CTCF-202ENST00000401394 RNF2Q99496 336 aa17.09■□□□□ 0.33
CTCF-202ENST00000401394 CLEC5AQ9NY25 188 aa17.09■□□□□ 0.33
CTCF-202ENST00000401394 OR5G3P0C626 314 aa17.08■□□□□ 0.33
CTCF-202ENST00000401394 DIAPH2-AS1Q14236 149 aa17.08■□□□□ 0.33
CTCF-202ENST00000401394 SLC35E1Q96K37 410 aa17.08■□□□□ 0.33
CTCF-202ENST00000401394 MGST3O14880 152 aa17.08■□□□□ 0.32
CTCF-202ENST00000401394 MFAP2P55001 183 aa17.08■□□□□ 0.32
CTCF-202ENST00000401394 MRPL36Q9P0J6 103 aaKnown RBP17.08■□□□□ 0.32
CTCF-202ENST00000401394 IGHV3-21A0A0B4J1V1 117 aa17.07■□□□□ 0.32
CTCF-202ENST00000401394 EBLN2Q6P2I7 272 aa17.07■□□□□ 0.32
CTCF-202ENST00000401394 TRAT1Q6PIZ9 186 aa17.07■□□□□ 0.32
CTCF-202ENST00000401394 FDCSPQ8NFU4 85 aa17.07■□□□□ 0.32
CTCF-202ENST00000401394 ASCL2Q99929 193 aa17.07■□□□□ 0.32
CTCF-202ENST00000401394 CCL25O15444 150 aa17.07■□□□□ 0.32
CTCF-202ENST00000401394 APCSP02743 223 aa17.07■□□□□ 0.32
CTCF-202ENST00000401394 REG1AP05451 166 aa17.07■□□□□ 0.32
CTCF-202ENST00000401394 RAB31Q13636 194 aa17.07■□□□□ 0.32
CTCF-202ENST00000401394 C18orf32Q8TCD1 76 aa17.07■□□□□ 0.32
CTCF-202ENST00000401394 M0R1B8 84 aa17.07■□□□□ 0.32
CTCF-202ENST00000401394 FOXA3P55318 350 aaPredicted RBP17.07■□□□□ 0.32
CTCF-202ENST00000401394 ZNF841Q6ZN19 808 aa17.07■□□□□ 0.32
CTCF-202ENST00000401394 SPACA3Q8IXA5 215 aa17.07■□□□□ 0.32
CTCF-202ENST00000401394 TEX50A0A1B0GTY4 177 aa17.06■□□□□ 0.32
CTCF-202ENST00000401394 HNRNPA3P51991 378 aaKnown RBP17.06■□□□□ 0.32
CTCF-202ENST00000401394 COL5A1-AS1Q5SY13 56 aa17.06■□□□□ 0.32
CTCF-202ENST00000401394 LINC00173Q6ZV60 143 aa17.06■□□□□ 0.32
CTCF-202ENST00000401394 ZNF439Q8NDP4 499 aa17.06■□□□□ 0.32
CTCF-202ENST00000401394 IGF2BP2-AS1Q96M15 143 aa17.06■□□□□ 0.32
CTCF-202ENST00000401394 TXNDC17Q9BRA2 123 aa17.06■□□□□ 0.32
CTCF-202ENST00000401394 ZPBPQ9BS86 351 aa17.06■□□□□ 0.32
CTCF-202ENST00000401394 ISLRO14498 428 aa17.06■□□□□ 0.32
CTCF-202ENST00000401394 MT-CO2P00403 227 aa17.06■□□□□ 0.32
CTCF-202ENST00000401394 CT45A6P0DMU7 189 aa17.06■□□□□ 0.32
CTCF-202ENST00000401394 CT45A5P0DMU8 189 aa17.06■□□□□ 0.32
CTCF-202ENST00000401394 CT45A7P0DMV0 189 aa17.06■□□□□ 0.32
CTCF-202ENST00000401394 LAMTOR2Q9Y2Q5 125 aa17.06■□□□□ 0.32
CTCF-202ENST00000401394 TRGV8A0A0C4DH27 118 aa17.05■□□□□ 0.32
CTCF-202ENST00000401394 C21orf140B9A014 251 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms