RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 KIR3DS1Q14943 382 aa9.98□□□□□ -0.81
SYNPO-202ENST00000394243 ZNRF1Q8ND25 227 aa9.98□□□□□ -0.81
SYNPO-202ENST00000394243 OR9G1Q8NH87 305 aa9.98□□□□□ -0.81
SYNPO-202ENST00000394243 EEF1AKMT3Q96AZ1 226 aa9.98□□□□□ -0.81
SYNPO-202ENST00000394243 A0A0G2JMM0 328 aa9.98□□□□□ -0.81
SYNPO-202ENST00000394243 A0A1W2PPB8 328 aa9.98□□□□□ -0.81
SYNPO-202ENST00000394243 KIR3DP1A8MWS1 328 aa9.98□□□□□ -0.81
SYNPO-202ENST00000394243 CD33P20138 364 aa9.98□□□□□ -0.81
SYNPO-202ENST00000394243 TIMP3P35625 211 aa9.98□□□□□ -0.81
SYNPO-202ENST00000394243 ADAMTSL5Q6ZMM2 481 aa9.98□□□□□ -0.81
SYNPO-202ENST00000394243 SRXN1Q9BYN0 137 aa9.98□□□□□ -0.81
SYNPO-202ENST00000394243 PLSCR4Q9NRQ2 329 aa9.98□□□□□ -0.81
SYNPO-202ENST00000394243 IGHV1-69-2A0A0G2JMI3 117 aa9.97□□□□□ -0.81
SYNPO-202ENST00000394243 C12orf77C9JDV5 145 aa9.97□□□□□ -0.81
SYNPO-202ENST00000394243 CST9LQ9H4G1 147 aa9.97□□□□□ -0.81
SYNPO-202ENST00000394243 A8MWP6 167 aa9.97□□□□□ -0.81
SYNPO-202ENST00000394243 FAM214BQ7L5A3 538 aa9.97□□□□□ -0.81
SYNPO-202ENST00000394243 DUX5Q96PT3 197 aa9.97□□□□□ -0.81
SYNPO-202ENST00000394243 CFHR5Q9BXR6 569 aa9.97□□□□□ -0.81
SYNPO-202ENST00000394243 MRPL52Q86TS9 123 aaKnown RBP9.97□□□□□ -0.81
SYNPO-202ENST00000394243 NXT2Q9NPJ8 142 aaKnown RBP9.97□□□□□ -0.81
SYNPO-202ENST00000394243 TDRD15B5MCY1 1934 aaKnown RBP9.97□□□□□ -0.81
SYNPO-202ENST00000394243 PLNP26678 52 aa9.97□□□□□ -0.81
SYNPO-202ENST00000394243 CSRP3P50461 194 aa9.97□□□□□ -0.81
SYNPO-202ENST00000394243 APOBEC4Q8WW27 367 aaKnown RBP9.97□□□□□ -0.81
SYNPO-202ENST00000394243 RNASE4P34096 147 aaKnown RBP9.97□□□□□ -0.81
SYNPO-202ENST00000394243 SNRPD3P62318 126 aaKnown RBP9.97□□□□□ -0.81
SYNPO-202ENST00000394243 TMEM74BQ9NUR3 256 aa9.97□□□□□ -0.81
SYNPO-202ENST00000394243 ABCA3Q99758 1704 aa9.97□□□□□ -0.81
SYNPO-202ENST00000394243 IGHV3-64A0A075B6Q5 118 aa9.97□□□□□ -0.81
SYNPO-202ENST00000394243 C3orf79P0CE67 100 aa9.97□□□□□ -0.81
SYNPO-202ENST00000394243 TSPAN7P41732 249 aa9.97□□□□□ -0.81
SYNPO-202ENST00000394243 EIF4EBP2Q13542 120 aaPredicted RBP9.97□□□□□ -0.81
SYNPO-202ENST00000394243 PRR31Q5SQ13 230 aa9.97□□□□□ -0.81
SYNPO-202ENST00000394243 CYTL1Q9NRR1 136 aa9.97□□□□□ -0.81
SYNPO-202ENST00000394243 DEFB124Q8NES8 71 aa9.96□□□□□ -0.81
SYNPO-202ENST00000394243 TMEM54Q969K7 222 aa9.96□□□□□ -0.81
SYNPO-202ENST00000394243 LOC105371242A0A075B767 164 aa9.96□□□□□ -0.81
SYNPO-202ENST00000394243 PPIAL4CA0A0B4J2A2 164 aa9.96□□□□□ -0.81
SYNPO-202ENST00000394243 PPIAL4GP0DN37 164 aa9.96□□□□□ -0.81
SYNPO-202ENST00000394243 IGFBP3P17936 291 aaPredicted RBP9.96□□□□□ -0.81
SYNPO-202ENST00000394243 ZXDCQ2QGD7 858 aaPredicted RBP9.96□□□□□ -0.81
SYNPO-202ENST00000394243 DLX4Q92988 240 aaPredicted RBP9.96□□□□□ -0.81
SYNPO-202ENST00000394243 SCARF2Q96GP6 870 aaPredicted RBP9.96□□□□□ -0.81
SYNPO-202ENST00000394243 C21orf140B9A014 251 aa9.96□□□□□ -0.81
SYNPO-202ENST00000394243 C9orf172C9J069 976 aa9.96□□□□□ -0.81
SYNPO-202ENST00000394243 M0R2P5 195 aa9.96□□□□□ -0.81
SYNPO-202ENST00000394243 MPZP25189 248 aa9.96□□□□□ -0.81
SYNPO-202ENST00000394243 CD300EQ496F6 205 aaPredicted RBP9.96□□□□□ -0.81
SYNPO-202ENST00000394243 OTORQ9NRC9 128 aa9.96□□□□□ -0.81
SYNPO-202ENST00000394243 TDHQ8IZJ6 230 aa9.96□□□□□ -0.82
SYNPO-202ENST00000394243 ZNF501Q96CX3 271 aaPredicted RBP9.96□□□□□ -0.82
SYNPO-202ENST00000394243 ZNF48Q96MX3 618 aaPredicted RBP9.96□□□□□ -0.82
SYNPO-202ENST00000394243 YAE1D1Q9NRH1 226 aa9.96□□□□□ -0.82
SYNPO-202ENST00000394243 PYYP10082 97 aa9.96□□□□□ -0.82
SYNPO-202ENST00000394243 TSKUQ8WUA8 353 aa9.96□□□□□ -0.82
SYNPO-202ENST00000394243 IGHV1-45A0A0A0MS14 117 aa9.95□□□□□ -0.82
SYNPO-202ENST00000394243 IGKV1D-43A0A0B4J1Z2 117 aa9.95□□□□□ -0.82
SYNPO-202ENST00000394243 GGTLC3B5MD39 225 aa9.95□□□□□ -0.82
SYNPO-202ENST00000394243 NPSP0C0P6 89 aa9.95□□□□□ -0.82
SYNPO-202ENST00000394243 TNRC6CQ9HCJ0 1690 aaKnown RBP9.95□□□□□ -0.82
SYNPO-202ENST00000394243 IGHV3OR16-8A0A075B7F1 116 aa9.95□□□□□ -0.82
SYNPO-202ENST00000394243 IGKV1D-13A0A0B4J2D9 117 aa9.95□□□□□ -0.82
SYNPO-202ENST00000394243 IGKV1-13P0DP09 117 aa9.95□□□□□ -0.82
SYNPO-202ENST00000394243 PSG3Q16557 428 aa9.95□□□□□ -0.82
SYNPO-202ENST00000394243 CACNG8Q8WXS5 425 aa9.95□□□□□ -0.82
SYNPO-202ENST00000394243 CTHRC1Q96CG8 243 aa9.95□□□□□ -0.82
SYNPO-202ENST00000394243 ZNF703Q9H7S9 590 aaPredicted RBP9.95□□□□□ -0.82
SYNPO-202ENST00000394243 A0A087WV48 116 aa9.95□□□□□ -0.82
SYNPO-202ENST00000394243 A0A0U1RRA0 63 aa9.95□□□□□ -0.82
SYNPO-202ENST00000394243 COX5BP10606 129 aa9.95□□□□□ -0.82
SYNPO-202ENST00000394243 PPIFP30405 207 aaKnown RBP9.95□□□□□ -0.82
SYNPO-202ENST00000394243 IFI27P40305 119 aaPredicted RBP9.95□□□□□ -0.82
SYNPO-202ENST00000394243 TFF2Q03403 129 aa9.95□□□□□ -0.82
SYNPO-202ENST00000394243 TMEM144Q7Z5S9 345 aa9.95□□□□□ -0.82
SYNPO-202ENST00000394243 CLEC7AQ9BXN2 247 aa9.95□□□□□ -0.82
SYNPO-202ENST00000394243 FABP5P3A8MUU1 101 aa9.95□□□□□ -0.82
SYNPO-202ENST00000394243 EFNB3Q15768 340 aa9.94□□□□□ -0.82
SYNPO-202ENST00000394243 ATP5L2Q7Z4Y8 100 aa9.94□□□□□ -0.82
SYNPO-202ENST00000394243 MGST2Q99735 147 aa9.94□□□□□ -0.82
SYNPO-202ENST00000394243 PILRBQ9UKJ0 227 aa9.94□□□□□ -0.82
SYNPO-202ENST00000394243 HS3ST3B1Q9Y662 390 aa9.94□□□□□ -0.82
SYNPO-202ENST00000394243 NPC2P61916 151 aa9.94□□□□□ -0.82
SYNPO-202ENST00000394243 SPEM2Q0P670 501 aa9.94□□□□□ -0.82
SYNPO-202ENST00000394243 SLC25A20O43772 301 aa9.94□□□□□ -0.82
SYNPO-202ENST00000394243 TMEM30BQ3MIR4 351 aa9.94□□□□□ -0.82
SYNPO-202ENST00000394243 C2orf82Q6UX34 121 aa9.94□□□□□ -0.82
SYNPO-202ENST00000394243 SHISA5Q8N114 240 aa9.94□□□□□ -0.82
SYNPO-202ENST00000394243 OSR1Q8TAX0 266 aaPredicted RBP9.94□□□□□ -0.82
SYNPO-202ENST00000394243 A0A1B0GW64 132 aa9.94□□□□□ -0.82
SYNPO-202ENST00000394243 CD69Q07108 199 aa9.94□□□□□ -0.82
SYNPO-202ENST00000394243 CHODLQ9H9P2 273 aa9.94□□□□□ -0.82
SYNPO-202ENST00000394243 MYOFQ9NZM1 2061 aa9.94□□□□□ -0.82
SYNPO-202ENST00000394243 LAMB2P55268 1798 aa9.94□□□□□ -0.82
SYNPO-202ENST00000394243 CD5LO43866 347 aa9.94□□□□□ -0.82
SYNPO-202ENST00000394243 RAMP3O60896 148 aa9.94□□□□□ -0.82
SYNPO-202ENST00000394243 ACP7Q6ZNF0 438 aa9.94□□□□□ -0.82
SYNPO-202ENST00000394243 SNHG12Q9BXW3 62 aa9.94□□□□□ -0.82
SYNPO-202ENST00000394243 FBXL15Q9H469 300 aa9.94□□□□□ -0.82
SYNPO-202ENST00000394243 SMIM10L1P0DMW3 83 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms