RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 TMEM14BQ9NUH8 114 aa9.92□□□□□ -0.82
CLIP3-201ENST00000360535 V9GYV3 84 aa9.92□□□□□ -0.82
CLIP3-201ENST00000360535 A0A1B0GWJ7 208 aa9.91□□□□□ -0.82
CLIP3-201ENST00000360535 GGTLC3B5MD39 225 aa9.91□□□□□ -0.82
CLIP3-201ENST00000360535 H3BTX0 84 aa9.91□□□□□ -0.82
CLIP3-201ENST00000360535 OR5G3P0C626 314 aa9.91□□□□□ -0.82
CLIP3-201ENST00000360535 SAA1P0DJI8 122 aaPredicted RBP9.91□□□□□ -0.82
CLIP3-201ENST00000360535 PAX1P15863 534 aa9.91□□□□□ -0.82
CLIP3-201ENST00000360535 SELENOVP59797 346 aa9.91□□□□□ -0.82
CLIP3-201ENST00000360535 UBE2L3P68036 154 aaKnown RBP9.91□□□□□ -0.82
CLIP3-201ENST00000360535 SEM1Q6ZVN7 128 aa9.91□□□□□ -0.82
CLIP3-201ENST00000360535 COMMD5Q9GZQ3 224 aa9.91□□□□□ -0.82
CLIP3-201ENST00000360535 TECRQ9NZ01 308 aaKnown RBP9.91□□□□□ -0.82
CLIP3-201ENST00000360535 RNF7Q9UBF6 113 aa9.91□□□□□ -0.82
CLIP3-201ENST00000360535 TEX50A0A1B0GTY4 177 aa9.91□□□□□ -0.82
CLIP3-201ENST00000360535 CT45A6P0DMU7 189 aa9.91□□□□□ -0.82
CLIP3-201ENST00000360535 CT45A5P0DMU8 189 aa9.91□□□□□ -0.82
CLIP3-201ENST00000360535 CT45A7P0DMV0 189 aa9.91□□□□□ -0.82
CLIP3-201ENST00000360535 KIR2DS2P43631 304 aa9.91□□□□□ -0.82
CLIP3-201ENST00000360535 IBA57Q5T440 356 aaKnown RBP9.91□□□□□ -0.82
CLIP3-201ENST00000360535 FAM168AQ92567 244 aa9.91□□□□□ -0.82
CLIP3-201ENST00000360535 HARBI1Q96MB7 349 aa9.91□□□□□ -0.82
CLIP3-201ENST00000360535 FBXL7Q9UJT9 491 aa9.91□□□□□ -0.82
CLIP3-201ENST00000360535 GOLT1BQ9Y3E0 138 aa9.91□□□□□ -0.82
CLIP3-201ENST00000360535 TBL2Q9Y4P3 447 aaKnown RBP9.91□□□□□ -0.82
CLIP3-201ENST00000360535 IGHV3-72A0A0B4J1Y9 119 aa9.91□□□□□ -0.82
CLIP3-201ENST00000360535 GUSBP1Q15486 140 aa9.91□□□□□ -0.82
CLIP3-201ENST00000360535 RTL8BQ17RB0 113 aa9.91□□□□□ -0.82
CLIP3-201ENST00000360535 C1orf162Q8NEQ5 155 aaPredicted RBP9.91□□□□□ -0.82
CLIP3-201ENST00000360535 BLNKQ8WV28 456 aa9.91□□□□□ -0.82
CLIP3-201ENST00000360535 TXNDC17Q9BRA2 123 aa9.91□□□□□ -0.82
CLIP3-201ENST00000360535 FOXA2Q9Y261 457 aaPredicted RBP9.91□□□□□ -0.82
CLIP3-201ENST00000360535 E7EUB6 86 aa9.9□□□□□ -0.82
CLIP3-201ENST00000360535 NPSP0C0P6 89 aa9.9□□□□□ -0.82
CLIP3-201ENST00000360535 CAMPP49913 170 aa9.9□□□□□ -0.82
CLIP3-201ENST00000360535 TMPRSS3P57727 454 aa9.9□□□□□ -0.82
CLIP3-201ENST00000360535 RANP62826 216 aaKnown RBP9.9□□□□□ -0.82
CLIP3-201ENST00000360535 PRR20EP86478 221 aa9.9□□□□□ -0.82
CLIP3-201ENST00000360535 PRR20CP86479 221 aa9.9□□□□□ -0.82
CLIP3-201ENST00000360535 PRR20DP86480 221 aa9.9□□□□□ -0.82
CLIP3-201ENST00000360535 PRR20BP86481 221 aa9.9□□□□□ -0.82
CLIP3-201ENST00000360535 PRR20AP86496 221 aa9.9□□□□□ -0.82
CLIP3-201ENST00000360535 ZNF503Q96F45 646 aa9.9□□□□□ -0.82
CLIP3-201ENST00000360535 MRPL20Q9BYC9 149 aaKnown RBP9.9□□□□□ -0.82
CLIP3-201ENST00000360535 ZNF355PQ9NSJ1 428 aa9.9□□□□□ -0.82
CLIP3-201ENST00000360535 RAI1Q7Z5J4 1906 aaPredicted RBP9.9□□□□□ -0.82
CLIP3-201ENST00000360535 DIRC3C9JPN6 131 aa9.9□□□□□ -0.82
CLIP3-201ENST00000360535 SFTPCP11686 197 aa9.9□□□□□ -0.82
CLIP3-201ENST00000360535 DLX1P56177 255 aa9.9□□□□□ -0.82
CLIP3-201ENST00000360535 DIAPH2-AS1Q14236 149 aa9.9□□□□□ -0.82
CLIP3-201ENST00000360535 PLA2G2CQ5R387 149 aa9.9□□□□□ -0.82
CLIP3-201ENST00000360535 PRNDQ9UKY0 176 aa9.9□□□□□ -0.82
CLIP3-201ENST00000360535 CUL9Q8IWT3 2517 aa9.9□□□□□ -0.83
CLIP3-201ENST00000360535 TRGV8A0A0C4DH27 118 aa9.89□□□□□ -0.83
CLIP3-201ENST00000360535 FAM90A9PA6NNJ1 464 aa9.89□□□□□ -0.83
CLIP3-201ENST00000360535 ENSAO43768 121 aaKnown RBP9.89□□□□□ -0.83
CLIP3-201ENST00000360535 TOX4O94842 621 aa9.89□□□□□ -0.83
CLIP3-201ENST00000360535 GPR6P46095 362 aaPredicted RBP9.89□□□□□ -0.83
CLIP3-201ENST00000360535 TDGF1P3P51864 188 aa9.89□□□□□ -0.83
CLIP3-201ENST00000360535 TPTE2P1Q5T6R2 138 aa9.89□□□□□ -0.83
CLIP3-201ENST00000360535 TMEM167BQ9NRX6 74 aa9.89□□□□□ -0.83
CLIP3-201ENST00000360535 CBY1Q9Y3M2 126 aa9.89□□□□□ -0.83
CLIP3-201ENST00000360535 TIMM8BQ9Y5J9 83 aaPredicted RBP9.89□□□□□ -0.83
CLIP3-201ENST00000360535 ANKRD11Q6UB99 2663 aaPredicted RBP9.89□□□□□ -0.83
CLIP3-201ENST00000360535 UPK2O00526 184 aa9.89□□□□□ -0.83
CLIP3-201ENST00000360535 GNG5P63218 68 aa9.89□□□□□ -0.83
CLIP3-201ENST00000360535 PAFAH1B2P68402 229 aa9.89□□□□□ -0.83
CLIP3-201ENST00000360535 TMEM183BQ1AE95 376 aa9.89□□□□□ -0.83
CLIP3-201ENST00000360535 CORO2AQ92828 525 aa9.89□□□□□ -0.83
CLIP3-201ENST00000360535 NEUROG1Q92886 237 aa9.89□□□□□ -0.83
CLIP3-201ENST00000360535 SSBP4Q9BWG4 385 aaPredicted RBP9.89□□□□□ -0.83
CLIP3-201ENST00000360535 ZNF586Q9NXT0 402 aa9.89□□□□□ -0.83
CLIP3-201ENST00000360535 IGHV1-46P01743 117 aa9.89□□□□□ -0.83
CLIP3-201ENST00000360535 AREGP15514 252 aa9.89□□□□□ -0.83
CLIP3-201ENST00000360535 ORM2P19652 201 aa9.89□□□□□ -0.83
CLIP3-201ENST00000360535 USF1P22415 310 aaPredicted RBP9.89□□□□□ -0.83
CLIP3-201ENST00000360535 TMEM249Q2WGJ8 235 aa9.89□□□□□ -0.83
CLIP3-201ENST00000360535 STUMQ69YW2 141 aa9.89□□□□□ -0.83
CLIP3-201ENST00000360535 C19orf35Q6ZS72 473 aa9.89□□□□□ -0.83
CLIP3-201ENST00000360535 WFDC8Q8IUA0 241 aa9.89□□□□□ -0.83
CLIP3-201ENST00000360535 NPIPB3Q92617 1050 aa9.89□□□□□ -0.83
CLIP3-201ENST00000360535 NRN1Q9NPD7 142 aa9.89□□□□□ -0.83
CLIP3-201ENST00000360535 TUBG2Q9NRH3 451 aa9.89□□□□□ -0.83
CLIP3-201ENST00000360535 AKAP13Q12802 2813 aa9.88□□□□□ -0.83
CLIP3-201ENST00000360535 GLRXP35754 106 aa9.88□□□□□ -0.83
CLIP3-201ENST00000360535 CCL17Q92583 94 aa9.88□□□□□ -0.83
CLIP3-201ENST00000360535 GAFA1Q96PS6 74 aa9.88□□□□□ -0.83
CLIP3-201ENST00000360535 COX7A2P2O60397 106 aa9.88□□□□□ -0.83
CLIP3-201ENST00000360535 BRS3P32247 399 aa9.88□□□□□ -0.83
CLIP3-201ENST00000360535 MFAP2P55001 183 aa9.88□□□□□ -0.83
CLIP3-201ENST00000360535 TAS2R45P59539 299 aa9.88□□□□□ -0.83
CLIP3-201ENST00000360535 PRCDQ00LT1 54 aa9.88□□□□□ -0.83
CLIP3-201ENST00000360535 DMRTA1Q5VZB9 504 aa9.88□□□□□ -0.83
CLIP3-201ENST00000360535 HCP5Q6MZN7 132 aa9.88□□□□□ -0.83
CLIP3-201ENST00000360535 SLC35E1Q96K37 410 aa9.88□□□□□ -0.83
CLIP3-201ENST00000360535 ZNF331Q9NQX6 463 aaPredicted RBP9.88□□□□□ -0.83
CLIP3-201ENST00000360535 CSMD1Q96PZ7 3565 aa9.88□□□□□ -0.83
CLIP3-201ENST00000360535 CACNA1BQ00975 2339 aa9.88□□□□□ -0.83
CLIP3-201ENST00000360535 KIR2DL5BA0A0G2JN68 375 aa9.88□□□□□ -0.83
CLIP3-201ENST00000360535 KIR2DL5BA0A0G2JPC4 375 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms