RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 LINC01560Q8TB33 94 aa15.69■□□□□ 0.1
COL9A3-201ENST00000343916 MISP3Q96FF7 219 aa15.69■□□□□ 0.1
COL9A3-201ENST00000343916 NDUFA4L2Q9NRX3 87 aa15.69■□□□□ 0.1
COL9A3-201ENST00000343916 OR2T10Q8NGZ9 312 aa15.69■□□□□ 0.1
COL9A3-201ENST00000343916 RNASEH2CQ8TDP1 164 aaKnown RBP15.69■□□□□ 0.1
COL9A3-201ENST00000343916 TACC2O95359 2948 aa15.68■□□□□ 0.1
COL9A3-201ENST00000343916 ZZEF1O43149 2961 aa15.68■□□□□ 0.1
COL9A3-201ENST00000343916 IGHV1-69-2A0A0G2JMI3 117 aa15.68■□□□□ 0.1
COL9A3-201ENST00000343916 RBPJQ06330 500 aa15.68■□□□□ 0.1
COL9A3-201ENST00000343916 TMEM177Q53S58 311 aa15.68■□□□□ 0.1
COL9A3-201ENST00000343916 OR4C13Q8NGP0 309 aa15.68■□□□□ 0.1
COL9A3-201ENST00000343916 RITA1Q96K30 269 aa15.68■□□□□ 0.1
COL9A3-201ENST00000343916 MSRB2Q9Y3D2 182 aa15.68■□□□□ 0.1
COL9A3-201ENST00000343916 SPTBN4Q9H254 2564 aa15.68■□□□□ 0.1
COL9A3-201ENST00000343916 MALRD1Q5VYJ5 2156 aa15.68■□□□□ 0.1
COL9A3-201ENST00000343916 IGHV3-72A0A0B4J1Y9 119 aa15.68■□□□□ 0.1
COL9A3-201ENST00000343916 PAX1P15863 534 aa15.68■□□□□ 0.1
COL9A3-201ENST00000343916 GRNP28799 593 aaKnown RBP15.68■□□□□ 0.1
COL9A3-201ENST00000343916 DLX6P56179 175 aa15.68■□□□□ 0.1
COL9A3-201ENST00000343916 OR2T6Q8NHC8 308 aa15.68■□□□□ 0.1
COL9A3-201ENST00000343916 ST6GALNAC6Q969X2 333 aa15.68■□□□□ 0.1
COL9A3-201ENST00000343916 VKORC1Q9BQB6 163 aa15.68■□□□□ 0.1
COL9A3-201ENST00000343916 A8MWP6 167 aa15.67■□□□□ 0.1
COL9A3-201ENST00000343916 FNDC10F2Z333 226 aa15.67■□□□□ 0.1
COL9A3-201ENST00000343916 IGHV3-48P01763 117 aa15.67■□□□□ 0.1
COL9A3-201ENST00000343916 PSG5Q15238 335 aa15.67■□□□□ 0.1
COL9A3-201ENST00000343916 OR1L8Q8NGR8 309 aa15.67■□□□□ 0.1
COL9A3-201ENST00000343916 DCHS2Q6V1P9 2916 aa15.67■□□□□ 0.1
COL9A3-201ENST00000343916 APOBEC3AP31941 199 aaPredicted RBP15.67■□□□□ 0.1
COL9A3-201ENST00000343916 TAS2R60P59551 318 aa15.67■□□□□ 0.1
COL9A3-201ENST00000343916 USF2Q15853 346 aaPredicted RBP15.67■□□□□ 0.1
COL9A3-201ENST00000343916 TMEM155Q4W5P6 130 aa15.67■□□□□ 0.1
COL9A3-201ENST00000343916 SSX8Q7RTT4 187 aa15.67■□□□□ 0.1
COL9A3-201ENST00000343916 OCC1Q8TAD7 63 aa15.67■□□□□ 0.1
COL9A3-201ENST00000343916 TMEM186Q96B77 213 aa15.67■□□□□ 0.1
COL9A3-201ENST00000343916 ACY3Q96HD9 319 aa15.67■□□□□ 0.1
COL9A3-201ENST00000343916 TXNDC17Q9BRA2 123 aa15.67■□□□□ 0.1
COL9A3-201ENST00000343916 TPSG1Q9NRR2 321 aa15.67■□□□□ 0.1
COL9A3-201ENST00000343916 CGB1A6NKQ9 187 aa15.66■□□□□ 0.1
COL9A3-201ENST00000343916 FAM90A27PA6NNH2 459 aa15.66■□□□□ 0.1
COL9A3-201ENST00000343916 GGCTO75223 188 aaKnown RBP15.66■□□□□ 0.1
COL9A3-201ENST00000343916 WT1-ASQ06250 92 aa15.66■□□□□ 0.1
COL9A3-201ENST00000343916 CD69Q07108 199 aa15.66■□□□□ 0.1
COL9A3-201ENST00000343916 C11orf42Q8N5U0 333 aa15.66■□□□□ 0.1
COL9A3-201ENST00000343916 SFRP2Q96HF1 295 aa15.66■□□□□ 0.1
COL9A3-201ENST00000343916 ATRXP46100 2492 aa15.66■□□□□ 0.1
COL9A3-201ENST00000343916 ANKHD1Q8IWZ3 2542 aaKnown RBP15.66■□□□□ 0.1
COL9A3-201ENST00000343916 IGLV2-23P01705 113 aa15.66■□□□□ 0.1
COL9A3-201ENST00000343916 IGHV1-8P0DP01 117 aa15.66■□□□□ 0.1
COL9A3-201ENST00000343916 USF1P22415 310 aaPredicted RBP15.66■□□□□ 0.1
COL9A3-201ENST00000343916 SRP14P37108 136 aaKnown RBP15.66■□□□□ 0.1
COL9A3-201ENST00000343916 SSBP2P81877 361 aaPredicted RBP15.66■□□□□ 0.1
COL9A3-201ENST00000343916 COA6Q5JTJ3 125 aaKnown RBP15.66■□□□□ 0.1
COL9A3-201ENST00000343916 ZNF430Q9H8G1 570 aaPredicted RBP15.66■□□□□ 0.1
COL9A3-201ENST00000343916 KAAG1Q9UBP8 84 aa15.66■□□□□ 0.1
COL9A3-201ENST00000343916 SLC25A17O43808 307 aa15.65■□□□□ 0.1
COL9A3-201ENST00000343916 CD3EP07766 207 aa15.65■□□□□ 0.1
COL9A3-201ENST00000343916 OR10J4P0C629 311 aa15.65■□□□□ 0.1
COL9A3-201ENST00000343916 ERHP84090 104 aaKnown RBP15.65■□□□□ 0.1
COL9A3-201ENST00000343916 ACTL10Q5JWF8 245 aa15.65■□□□□ 0.1
COL9A3-201ENST00000343916 PDPNQ86YL7 162 aa15.65■□□□□ 0.1
COL9A3-201ENST00000343916 TGIF2LXQ8IUE1 241 aa15.65■□□□□ 0.1
COL9A3-201ENST00000343916 ZNF503Q96F45 646 aa15.65■□□□□ 0.1
COL9A3-201ENST00000343916 A0A0U1RQK1 487 aa15.65■□□□□ 0.1
COL9A3-201ENST00000343916 KCNIP4Q6PIL6 250 aa15.65■□□□□ 0.1
COL9A3-201ENST00000343916 WASHC3Q9Y3C0 194 aa15.65■□□□□ 0.1
COL9A3-201ENST00000343916 OR7C2O60412 319 aa15.64■□□□□ 0.09
COL9A3-201ENST00000343916 MT-CO2P00403 227 aa15.64■□□□□ 0.09
COL9A3-201ENST00000343916 IL3RAP26951 378 aa15.64■□□□□ 0.09
COL9A3-201ENST00000343916 SSX2Q16385 188 aa15.64■□□□□ 0.09
COL9A3-201ENST00000343916 LINC00311Q8N616 119 aa15.64■□□□□ 0.09
COL9A3-201ENST00000343916 TMEM167AQ8TBQ9 72 aa15.64■□□□□ 0.09
COL9A3-201ENST00000343916 ZNF596Q8TC21 504 aa15.64■□□□□ 0.09
COL9A3-201ENST00000343916 MDFIC2A0A1B0GVS7 189 aa15.63■□□□□ 0.09
COL9A3-201ENST00000343916 ENSAO43768 121 aaKnown RBP15.63■□□□□ 0.09
COL9A3-201ENST00000343916 REG1AP05451 166 aa15.63■□□□□ 0.09
COL9A3-201ENST00000343916 SGMS2Q8NHU3 365 aa15.63■□□□□ 0.09
COL9A3-201ENST00000343916 FNDC4Q9H6D8 234 aaPredicted RBP15.63■□□□□ 0.09
COL9A3-201ENST00000343916 K7EN84 100 aa15.63■□□□□ 0.09
COL9A3-201ENST00000343916 DLL1O00548 723 aa15.63■□□□□ 0.09
COL9A3-201ENST00000343916 CD99P14209 185 aa15.63■□□□□ 0.09
COL9A3-201ENST00000343916 MORN5Q5VZ52 161 aa15.63■□□□□ 0.09
COL9A3-201ENST00000343916 MRPL41Q8IXM3 137 aaKnown RBP15.63■□□□□ 0.09
COL9A3-201ENST00000343916 B9A039 149 aa15.62■□□□□ 0.09
COL9A3-201ENST00000343916 SIAH2O43255 324 aa15.62■□□□□ 0.09
COL9A3-201ENST00000343916 PDLIM4P50479 330 aa15.62■□□□□ 0.09
COL9A3-201ENST00000343916 SLC35E1Q96K37 410 aa15.62■□□□□ 0.09
COL9A3-201ENST00000343916 NOL4LQ96MY1 436 aaPredicted RBP15.62■□□□□ 0.09
COL9A3-201ENST00000343916 C2orf88Q9BSF0 95 aa15.62■□□□□ 0.09
COL9A3-201ENST00000343916 ZNF320A2RRD8 509 aa15.62■□□□□ 0.09
COL9A3-201ENST00000343916 GCGP01275 180 aa15.62■□□□□ 0.09
COL9A3-201ENST00000343916 HLA-DRB5Q30154 266 aa15.62■□□□□ 0.09
COL9A3-201ENST00000343916 TEX38Q6PEX7 206 aa15.62■□□□□ 0.09
COL9A3-201ENST00000343916 VSTM2AQ8TAG5 236 aa15.62■□□□□ 0.09
COL9A3-201ENST00000343916 NDUFAF3Q9BU61 184 aa15.62■□□□□ 0.09
COL9A3-201ENST00000343916 A0A1B0GUS0 222 aa15.61■□□□□ 0.09
COL9A3-201ENST00000343916 APELAP0DMC3 54 aa15.61■□□□□ 0.09
COL9A3-201ENST00000343916 ATP5IP56385 69 aaPredicted RBP15.61■□□□□ 0.09
COL9A3-201ENST00000343916 C8orf31Q8N9H6 132 aa15.61■□□□□ 0.09
COL9A3-201ENST00000343916 TMEM18Q96B42 140 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms