RNA–Protein interactions for RNA: ENST00000340958.3

CLDN4-201, Transcript of claudin 4, humanhuman

APPRIS P1 BASIC

Gene CLDN4, Length 1,831 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-201ENST00000340958 RBM14Q96PK6 669 aaKnown RBP13.78□□□□□ -0.2
CLDN4-201ENST00000340958 P2RX4Q99571 388 aa13.78□□□□□ -0.2
CLDN4-201ENST00000340958 PITPNC1Q9UKF7 332 aa13.78□□□□□ -0.2
CLDN4-201ENST00000340958 MOB4Q9Y3A3 225 aa13.78□□□□□ -0.2
CLDN4-201ENST00000340958 SONP18583 2426 aaKnown RBP13.77□□□□□ -0.2
CLDN4-201ENST00000340958 MDFIC2A0A1B0GVS7 189 aa13.77□□□□□ -0.21
CLDN4-201ENST00000340958 TEX22C9J3V5 150 aa13.77□□□□□ -0.21
CLDN4-201ENST00000340958 DEFB112Q30KQ8 113 aa13.77□□□□□ -0.21
CLDN4-201ENST00000340958 BSXQ3C1V8 233 aa13.77□□□□□ -0.21
CLDN4-201ENST00000340958 PXDC1Q5TGL8 231 aa13.77□□□□□ -0.21
CLDN4-201ENST00000340958 BCL6BQ8N143 479 aaPredicted RBP13.77□□□□□ -0.21
CLDN4-201ENST00000340958 TEX29Q8N6K0 151 aa13.77□□□□□ -0.21
CLDN4-201ENST00000340958 SRSF8Q9BRL6 282 aaKnown RBP13.77□□□□□ -0.21
CLDN4-201ENST00000340958 RSG1Q9BU20 258 aa13.77□□□□□ -0.21
CLDN4-201ENST00000340958 HIVEP2P31629 2446 aa13.76□□□□□ -0.21
CLDN4-201ENST00000340958 OPRK1P41145 380 aa13.76□□□□□ -0.21
CLDN4-201ENST00000340958 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.76□□□□□ -0.21
CLDN4-201ENST00000340958 TAF15Q92804 592 aaKnown RBP eCLIP13.76□□□□□ -0.21
CLDN4-201ENST00000340958 MISP3Q96FF7 219 aa13.76□□□□□ -0.21
CLDN4-201ENST00000340958 FN1P02751 2386 aaKnown RBP13.76□□□□□ -0.21
CLDN4-201ENST00000340958 BTBD17A6NE02 478 aa13.76□□□□□ -0.21
CLDN4-201ENST00000340958 C17orf112F2Z3M2 114 aa13.76□□□□□ -0.21
CLDN4-201ENST00000340958 SSBP2P81877 361 aaPredicted RBP13.76□□□□□ -0.21
CLDN4-201ENST00000340958 VWC2Q2TAL6 325 aa13.76□□□□□ -0.21
CLDN4-201ENST00000340958 AKR1C8PQ5T2L2 129 aa13.76□□□□□ -0.21
CLDN4-201ENST00000340958 BTNL8Q6UX41 500 aa13.76□□□□□ -0.21
CLDN4-201ENST00000340958 PIFOQ8TCI5 191 aa13.76□□□□□ -0.21
CLDN4-201ENST00000340958 RNASEH2CQ8TDP1 164 aaKnown RBP13.76□□□□□ -0.21
CLDN4-201ENST00000340958 PARD6GQ9BYG4 376 aaPredicted RBP13.76□□□□□ -0.21
CLDN4-201ENST00000340958 NPVFQ9HCQ7 196 aa13.76□□□□□ -0.21
CLDN4-201ENST00000340958 FBXO7Q9Y3I1 522 aa13.76□□□□□ -0.21
CLDN4-201ENST00000340958 HLA-DRB1P01911 266 aa13.75□□□□□ -0.21
CLDN4-201ENST00000340958 OR1P1Q8NH06 330 aa13.75□□□□□ -0.21
CLDN4-201ENST00000340958 SLC35E1Q96K37 410 aa13.75□□□□□ -0.21
CLDN4-201ENST00000340958 PARP11Q9NR21 331 aa13.75□□□□□ -0.21
CLDN4-201ENST00000340958 RFNGQ9Y644 331 aa13.75□□□□□ -0.21
CLDN4-201ENST00000340958 IGHV7-81A0A0B4J1V7 117 aa13.74□□□□□ -0.21
CLDN4-201ENST00000340958 PRSS46E5RG02 174 aa13.74□□□□□ -0.21
CLDN4-201ENST00000340958 TRIM77I1YAP6 450 aa13.74□□□□□ -0.21
CLDN4-201ENST00000340958 CAMLGP49069 296 aa13.74□□□□□ -0.21
CLDN4-201ENST00000340958 SULT1A2P50226 295 aa13.74□□□□□ -0.21
CLDN4-201ENST00000340958 RAB31Q13636 194 aa13.74□□□□□ -0.21
CLDN4-201ENST00000340958 C9orf152Q5JTZ5 239 aa13.74□□□□□ -0.21
CLDN4-201ENST00000340958 C5orf56Q8N8D9 126 aa13.74□□□□□ -0.21
CLDN4-201ENST00000340958 ANK3Q12955 4377 aaKnown RBP13.74□□□□□ -0.21
CLDN4-201ENST00000340958 SH2D7A6NKC9 451 aaPredicted RBP13.74□□□□□ -0.21
CLDN4-201ENST00000340958 CORTO00230 105 aa13.74□□□□□ -0.21
CLDN4-201ENST00000340958 RAB5CP51148 216 aa13.74□□□□□ -0.21
CLDN4-201ENST00000340958 ETFRF1Q6IPR1 90 aa13.74□□□□□ -0.21
CLDN4-201ENST00000340958 SLC16A13Q7RTY0 426 aa13.74□□□□□ -0.21
CLDN4-201ENST00000340958 ZNF114Q8NC26 417 aa13.74□□□□□ -0.21
CLDN4-201ENST00000340958 NPCDR1Q9BY65 106 aa13.74□□□□□ -0.21
CLDN4-201ENST00000340958 YAE1D1Q9NRH1 226 aa13.74□□□□□ -0.21
CLDN4-201ENST00000340958 TNFRSF19Q9NS68 423 aa13.74□□□□□ -0.21
CLDN4-201ENST00000340958 F11RQ9Y624 299 aaKnown RBP13.74□□□□□ -0.21
CLDN4-201ENST00000340958 A6NDX4 124 aa13.73□□□□□ -0.21
CLDN4-201ENST00000340958 UMAD1C9J7I0 102 aa13.73□□□□□ -0.21
CLDN4-201ENST00000340958 PLXNB1O43157 2135 aa13.73□□□□□ -0.21
CLDN4-201ENST00000340958 CYB5BO43169 146 aa13.73□□□□□ -0.21
CLDN4-201ENST00000340958 FGF16O43320 207 aa13.73□□□□□ -0.21
CLDN4-201ENST00000340958 CD5LO43866 347 aa13.73□□□□□ -0.21
CLDN4-201ENST00000340958 MPDU1O75352 247 aa13.73□□□□□ -0.21
CLDN4-201ENST00000340958 GPX4P36969 197 aaPredicted RBP13.73□□□□□ -0.21
CLDN4-201ENST00000340958 SRP14P37108 136 aaKnown RBP13.73□□□□□ -0.21
CLDN4-201ENST00000340958 ELLP55199 621 aaPredicted RBP13.73□□□□□ -0.21
CLDN4-201ENST00000340958 CD69Q07108 199 aa13.73□□□□□ -0.21
CLDN4-201ENST00000340958 ZNF616Q08AN1 781 aa13.73□□□□□ -0.21
CLDN4-201ENST00000340958 ARSJQ5FYB0 599 aaPredicted RBP13.73□□□□□ -0.21
CLDN4-201ENST00000340958 TEPPQ6URK8 271 aa13.73□□□□□ -0.21
CLDN4-201ENST00000340958 TREML4Q6UXN2 200 aa13.73□□□□□ -0.21
CLDN4-201ENST00000340958 C19orf35Q6ZS72 473 aa13.73□□□□□ -0.21
CLDN4-201ENST00000340958 LFNGQ8NES3 379 aa13.73□□□□□ -0.21
CLDN4-201ENST00000340958 CACNG8Q8WXS5 425 aa13.73□□□□□ -0.21
CLDN4-201ENST00000340958 ACY3Q96HD9 319 aa13.73□□□□□ -0.21
CLDN4-201ENST00000340958 HSPB9Q9BQS6 159 aa13.73□□□□□ -0.21
CLDN4-201ENST00000340958 PSMG3Q9BT73 122 aaPredicted RBP13.73□□□□□ -0.21
CLDN4-201ENST00000340958 WNT10AQ9GZT5 417 aa13.73□□□□□ -0.21
CLDN4-201ENST00000340958 WDR83OSQ9Y284 106 aa13.73□□□□□ -0.21
CLDN4-201ENST00000340958 M0QZK8 103 aa13.72□□□□□ -0.21
CLDN4-201ENST00000340958 FSHBP01225 129 aa13.72□□□□□ -0.21
CLDN4-201ENST00000340958 FAM157CP0CG43 387 aa13.72□□□□□ -0.21
CLDN4-201ENST00000340958 BLOC1S1P78537 153 aa13.72□□□□□ -0.21
CLDN4-201ENST00000340958 NDPQ00604 133 aa13.72□□□□□ -0.21
CLDN4-201ENST00000340958 MLANAQ16655 118 aa13.72□□□□□ -0.21
CLDN4-201ENST00000340958 OR1L6Q8NGR2 347 aa13.72□□□□□ -0.21
CLDN4-201ENST00000340958 FAM213BQ8TBF2 198 aa13.72□□□□□ -0.21
CLDN4-201ENST00000340958 TIMM9Q9Y5J7 89 aa13.72□□□□□ -0.21
CLDN4-201ENST00000340958 C2CD3Q4AC94 2353 aa13.72□□□□□ -0.21
CLDN4-201ENST00000340958 BTN1A1Q13410 526 aa13.71□□□□□ -0.21
CLDN4-201ENST00000340958 ECSCRQ19T08 205 aa13.71□□□□□ -0.21
CLDN4-201ENST00000340958 Q6ZRG5 221 aa13.71□□□□□ -0.21
CLDN4-201ENST00000340958 C9orf139Q6ZV77 190 aa13.71□□□□□ -0.21
CLDN4-201ENST00000340958 IL17RELQ6ZVW7 336 aa13.71□□□□□ -0.21
CLDN4-201ENST00000340958 SAT2Q96F10 170 aaPredicted RBP13.71□□□□□ -0.21
CLDN4-201ENST00000340958 FNDC10F2Z333 226 aa13.71□□□□□ -0.22
CLDN4-201ENST00000340958 IGHV3-48P01763 117 aa13.71□□□□□ -0.22
CLDN4-201ENST00000340958 IGHV4-59P01825 116 aa13.71□□□□□ -0.22
CLDN4-201ENST00000340958 CTRB1P17538 263 aa13.71□□□□□ -0.22
CLDN4-201ENST00000340958 SERF2P84101 59 aa13.71□□□□□ -0.22
CLDN4-201ENST00000340958 GAMTQ14353 236 aa13.71□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms