RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 NLRC5Q86WI3 1866 aa8.52□□□□□ -1.04
CHD3-201ENST00000330494 NOTCH4Q99466 2003 aa8.52□□□□□ -1.04
CHD3-201ENST00000330494 SCO2A0A1W2PP80 73 aa8.52□□□□□ -1.04
CHD3-201ENST00000330494 DANCRP0C864 163 aa8.52□□□□□ -1.04
CHD3-201ENST00000330494 IGFBP3P17936 291 aaPredicted RBP8.52□□□□□ -1.04
CHD3-201ENST00000330494 SAPCD1Q5SSQ6 148 aa8.52□□□□□ -1.04
CHD3-201ENST00000330494 GGNQ86UU5 652 aa8.52□□□□□ -1.04
CHD3-201ENST00000330494 RAX2Q96IS3 184 aa8.52□□□□□ -1.04
CHD3-201ENST00000330494 SNAI2O43623 268 aa8.52□□□□□ -1.05
CHD3-201ENST00000330494 AGAP20933 346 aa8.52□□□□□ -1.05
CHD3-201ENST00000330494 SRIP30626 198 aa8.52□□□□□ -1.05
CHD3-201ENST00000330494 LRRK1Q38SD2 2015 aa8.52□□□□□ -1.05
CHD3-201ENST00000330494 SMDT1Q9H4I9 107 aa8.52□□□□□ -1.05
CHD3-201ENST00000330494 MRPS18CQ9Y3D5 142 aaKnown RBP8.52□□□□□ -1.05
CHD3-201ENST00000330494 SLC17A3O00476 420 aa8.52□□□□□ -1.05
CHD3-201ENST00000330494 MARVELD3Q96A59 401 aa8.52□□□□□ -1.05
CHD3-201ENST00000330494 C5orf63A6NC05 138 aa8.52□□□□□ -1.05
CHD3-201ENST00000330494 C19orf54Q5BKX5 351 aa8.52□□□□□ -1.05
CHD3-201ENST00000330494 SFRP2Q96HF1 295 aa8.52□□□□□ -1.05
CHD3-201ENST00000330494 GPR82Q96P67 336 aa8.52□□□□□ -1.05
CHD3-201ENST00000330494 TUBA4BQ9H853 241 aa8.52□□□□□ -1.05
CHD3-201ENST00000330494 A6NNC1 897 aa8.52□□□□□ -1.05
CHD3-201ENST00000330494 TMEM262E9PQX1 116 aa8.52□□□□□ -1.05
CHD3-201ENST00000330494 ZNF407Q9C0G0 2248 aa8.51□□□□□ -1.05
CHD3-201ENST00000330494 TM4SF5O14894 197 aa8.51□□□□□ -1.05
CHD3-201ENST00000330494 GNLYP22749 145 aa8.51□□□□□ -1.05
CHD3-201ENST00000330494 SNRPD3P62318 126 aaKnown RBP8.51□□□□□ -1.05
CHD3-201ENST00000330494 ZIC4Q8N9L1 334 aa8.51□□□□□ -1.05
CHD3-201ENST00000330494 SPAG8Q99932 426 aaPredicted RBP8.51□□□□□ -1.05
CHD3-201ENST00000330494 MEGF9Q9H1U4 602 aa8.51□□□□□ -1.05
CHD3-201ENST00000330494 HEATR5AQ86XA9 2040 aa8.51□□□□□ -1.05
CHD3-201ENST00000330494 SAA1P0DJI8 122 aaPredicted RBP8.51□□□□□ -1.05
CHD3-201ENST00000330494 PRSS8Q16651 343 aa8.51□□□□□ -1.05
CHD3-201ENST00000330494 TSC2P49815 1807 aa8.51□□□□□ -1.05
CHD3-201ENST00000330494 TRAV24A0A0B4J272 114 aa8.51□□□□□ -1.05
CHD3-201ENST00000330494 A0A1B0GWB2 263 aa8.51□□□□□ -1.05
CHD3-201ENST00000330494 M0R381 172 aa8.51□□□□□ -1.05
CHD3-201ENST00000330494 KLRD1Q13241 179 aa8.51□□□□□ -1.05
CHD3-201ENST00000330494 MIR17HGQ75NE6 70 aa8.51□□□□□ -1.05
CHD3-201ENST00000330494 RTN4RL2Q86UN3 420 aa8.51□□□□□ -1.05
CHD3-201ENST00000330494 IFI27L2Q9H2X8 130 aa8.51□□□□□ -1.05
CHD3-201ENST00000330494 C7orf71A4D174 169 aa8.51□□□□□ -1.05
CHD3-201ENST00000330494 CSRP1P21291 193 aaKnown RBP8.51□□□□□ -1.05
CHD3-201ENST00000330494 RNASE4P34096 147 aaKnown RBP8.51□□□□□ -1.05
CHD3-201ENST00000330494 ATP5G3P48201 142 aa8.51□□□□□ -1.05
CHD3-201ENST00000330494 LINC00271P0C7V0 271 aa8.5□□□□□ -1.05
CHD3-201ENST00000330494 FAM159AQ6UWV7 190 aa8.5□□□□□ -1.05
CHD3-201ENST00000330494 CACNA1GO43497 2377 aa8.5□□□□□ -1.05
CHD3-201ENST00000330494 LILRA1O75019 489 aa8.5□□□□□ -1.05
CHD3-201ENST00000330494 LY6HO94772 140 aa8.5□□□□□ -1.05
CHD3-201ENST00000330494 HLA-DRB1P01911 266 aa8.5□□□□□ -1.05
CHD3-201ENST00000330494 CBLN1P23435 193 aa8.5□□□□□ -1.05
CHD3-201ENST00000330494 ATRAIDQ6UW56 229 aa8.5□□□□□ -1.05
CHD3-201ENST00000330494 RCC1LQ96I51 464 aaKnown RBP8.5□□□□□ -1.05
CHD3-201ENST00000330494 SPTBN1Q01082 2364 aaKnown RBP8.5□□□□□ -1.05
CHD3-201ENST00000330494 IGKV1D-8A0A087WSZ0 117 aa8.5□□□□□ -1.05
CHD3-201ENST00000330494 HTN3P15516 51 aa8.5□□□□□ -1.05
CHD3-201ENST00000330494 TEX45Q8NA69 505 aa8.5□□□□□ -1.05
CHD3-201ENST00000330494 CDC42EP3Q9UKI2 254 aa8.5□□□□□ -1.05
CHD3-201ENST00000330494 PSMB11A5LHX3 300 aa8.5□□□□□ -1.05
CHD3-201ENST00000330494 NPIPB7O75200 414 aa8.5□□□□□ -1.05
CHD3-201ENST00000330494 IGHV1-46P01743 117 aa8.5□□□□□ -1.05
CHD3-201ENST00000330494 CLPSP04118 112 aa8.5□□□□□ -1.05
CHD3-201ENST00000330494 TMEM219Q86XT9 240 aa8.5□□□□□ -1.05
CHD3-201ENST00000330494 ANAPC13Q9BS18 74 aa8.5□□□□□ -1.05
CHD3-201ENST00000330494 MAP1LC3AQ9H492 121 aa8.5□□□□□ -1.05
CHD3-201ENST00000330494 ACACAQ13085 2346 aa8.5□□□□□ -1.05
CHD3-201ENST00000330494 MT-ND6P03923 174 aa8.5□□□□□ -1.05
CHD3-201ENST00000330494 THBDP07204 575 aa8.5□□□□□ -1.05
CHD3-201ENST00000330494 FOXA3P55318 350 aaPredicted RBP8.5□□□□□ -1.05
CHD3-201ENST00000330494 MORN2Q502X0 79 aa8.5□□□□□ -1.05
CHD3-201ENST00000330494 ZNF497Q6ZNH5 498 aa8.5□□□□□ -1.05
CHD3-201ENST00000330494 BIVMQ86UB2 503 aa8.5□□□□□ -1.05
CHD3-201ENST00000330494 LINC00312Q9Y6C7 94 aa8.5□□□□□ -1.05
CHD3-201ENST00000330494 TRAV40A0A0B4J280 105 aa8.5□□□□□ -1.05
CHD3-201ENST00000330494 NBEAP1P0C6P0 100 aa8.5□□□□□ -1.05
CHD3-201ENST00000330494 GFI1Q99684 422 aa8.5□□□□□ -1.05
CHD3-201ENST00000330494 DPRXA6NFQ7 191 aa8.49□□□□□ -1.05
CHD3-201ENST00000330494 GNG5P63218 68 aa8.49□□□□□ -1.05
CHD3-201ENST00000330494 RNF144BQ7Z419 303 aa8.49□□□□□ -1.05
CHD3-201ENST00000330494 C18orf15Q96N68 181 aa8.49□□□□□ -1.05
CHD3-201ENST00000330494 MIEN1Q9BRT3 115 aa8.49□□□□□ -1.05
CHD3-201ENST00000330494 SLC25A28Q96A46 364 aa8.49□□□□□ -1.05
CHD3-201ENST00000330494 STAG3L3P0CL85 134 aa8.49□□□□□ -1.05
CHD3-201ENST00000330494 OR10W1Q8NGF6 305 aa8.49□□□□□ -1.05
CHD3-201ENST00000330494 TYMSP04818 313 aa8.49□□□□□ -1.05
CHD3-201ENST00000330494 CLDND2Q8NHS1 167 aa8.49□□□□□ -1.05
CHD3-201ENST00000330494 C21orf62Q9NYP8 219 aa8.49□□□□□ -1.05
CHD3-201ENST00000330494 SPCS1Q9Y6A9 102 aa8.49□□□□□ -1.05
CHD3-201ENST00000330494 A0A0G2JNJ9 132 aa8.49□□□□□ -1.05
CHD3-201ENST00000330494 J3QW42 95 aa8.49□□□□□ -1.05
CHD3-201ENST00000330494 Q9UFV3 132 aa8.49□□□□□ -1.05
CHD3-201ENST00000330494 TRAV14DV4A0A0A6YYC5 116 aa8.49□□□□□ -1.05
CHD3-201ENST00000330494 NSUN5P1Q3KNT7 163 aa8.49□□□□□ -1.05
CHD3-201ENST00000330494 OSR1Q8TAX0 266 aaPredicted RBP8.49□□□□□ -1.05
CHD3-201ENST00000330494 HLA-DQA1P01909 254 aa8.48□□□□□ -1.05
CHD3-201ENST00000330494 LDLRAD2Q5SZI1 272 aa8.48□□□□□ -1.05
CHD3-201ENST00000330494 IMMP2LQ96T52 175 aa8.48□□□□□ -1.05
CHD3-201ENST00000330494 MRPL16Q9NX20 251 aaKnown RBP8.48□□□□□ -1.05
CHD3-201ENST00000330494 TRBV20OR9-2A0A075B6H5 130 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms