RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 TRAV8-2A0A0B4J237 113 aa9.67□□□□□ -0.86
VPS39-201ENST00000318006 IGHV2-70P01814 119 aa9.67□□□□□ -0.86
VPS39-201ENST00000318006 CFHR1Q03591 330 aa9.67□□□□□ -0.86
VPS39-201ENST00000318006 ACTL10Q5JWF8 245 aa9.67□□□□□ -0.86
VPS39-201ENST00000318006 PAPPA-AS1Q5QFB9 102 aa9.67□□□□□ -0.86
VPS39-201ENST00000318006 PLPPR1Q8TBJ4 325 aa9.67□□□□□ -0.86
VPS39-201ENST00000318006 SEMA5BQ9P283 1151 aa9.67□□□□□ -0.86
VPS39-201ENST00000318006 RSPO4Q2I0M5 234 aaPredicted RBP9.67□□□□□ -0.86
VPS39-201ENST00000318006 C12orf77C9JDV5 145 aa9.67□□□□□ -0.86
VPS39-201ENST00000318006 TMPRSS3P57727 454 aa9.67□□□□□ -0.86
VPS39-201ENST00000318006 C19orf54Q5BKX5 351 aa9.67□□□□□ -0.86
VPS39-201ENST00000318006 ARTNQ5T4W7 220 aa9.67□□□□□ -0.86
VPS39-201ENST00000318006 LHFPL1Q86WI0 220 aa9.67□□□□□ -0.86
VPS39-201ENST00000318006 CHCHD1Q96BP2 118 aaKnown RBP9.67□□□□□ -0.86
VPS39-201ENST00000318006 SSBP4Q9BWG4 385 aaPredicted RBP9.67□□□□□ -0.86
VPS39-201ENST00000318006 MOSP00540 346 aa9.66□□□□□ -0.86
VPS39-201ENST00000318006 TMEM170BQ5T4T1 132 aa9.66□□□□□ -0.86
VPS39-201ENST00000318006 IGLV3-32A0A0A0MS00 114 aa9.66□□□□□ -0.86
VPS39-201ENST00000318006 TSPOP30536 169 aa9.66□□□□□ -0.86
VPS39-201ENST00000318006 GCSAMLQ5JQS6 135 aa9.66□□□□□ -0.86
VPS39-201ENST00000318006 TMEM256Q8N2U0 113 aa9.66□□□□□ -0.86
VPS39-201ENST00000318006 METTL26Q96S19 204 aa9.66□□□□□ -0.86
VPS39-201ENST00000318006 MRPS18CQ9Y3D5 142 aaKnown RBP9.66□□□□□ -0.86
VPS39-201ENST00000318006 RIF1Q5UIP0 2472 aaKnown RBP9.66□□□□□ -0.86
VPS39-201ENST00000318006 SUPT4H1P63272 117 aaKnown RBP9.66□□□□□ -0.86
VPS39-201ENST00000318006 TPTE2P1Q5T6R2 138 aa9.66□□□□□ -0.86
VPS39-201ENST00000318006 ZNF837Q96EG3 531 aaPredicted RBP9.66□□□□□ -0.86
VPS39-201ENST00000318006 IGHV3-48P01763 117 aa9.66□□□□□ -0.86
VPS39-201ENST00000318006 TIMP3P35625 211 aa9.66□□□□□ -0.86
VPS39-201ENST00000318006 SAMD5Q5TGI4 173 aa9.66□□□□□ -0.86
VPS39-201ENST00000318006 C17orf82Q86X59 251 aaPredicted RBP9.66□□□□□ -0.86
VPS39-201ENST00000318006 TMEM105Q8N8V8 129 aa9.66□□□□□ -0.86
VPS39-201ENST00000318006 CGB1A6NKQ9 187 aa9.65□□□□□ -0.86
VPS39-201ENST00000318006 DNAL4O96015 105 aa9.65□□□□□ -0.86
VPS39-201ENST00000318006 REG1AP05451 166 aa9.65□□□□□ -0.86
VPS39-201ENST00000318006 ZFP36L1Q07352 338 aaKnown RBP9.65□□□□□ -0.86
VPS39-201ENST00000318006 CIARTQ8N365 385 aaPredicted RBP9.65□□□□□ -0.86
VPS39-201ENST00000318006 LEAP2Q969E1 77 aa9.65□□□□□ -0.86
VPS39-201ENST00000318006 VSIRQ9H7M9 311 aa9.65□□□□□ -0.86
VPS39-201ENST00000318006 TMEM171Q8WVE6 324 aa9.65□□□□□ -0.86
VPS39-201ENST00000318006 IGKV1D-13A0A0B4J2D9 117 aa9.65□□□□□ -0.86
VPS39-201ENST00000318006 IGKV1-13P0DP09 117 aa9.65□□□□□ -0.86
VPS39-201ENST00000318006 RAB9AP51151 201 aa9.65□□□□□ -0.86
VPS39-201ENST00000318006 OR52E5Q8NH55 327 aa9.65□□□□□ -0.86
VPS39-201ENST00000318006 ZNF479Q96JC4 524 aa9.65□□□□□ -0.86
VPS39-201ENST00000318006 SCGB3A1Q96QR1 104 aa9.65□□□□□ -0.86
VPS39-201ENST00000318006 IGHV1-69-2A0A0G2JMI3 117 aa9.65□□□□□ -0.87
VPS39-201ENST00000318006 IFNL4K9M1U5 179 aa9.65□□□□□ -0.87
VPS39-201ENST00000318006 RPL39P5Q59GN2 51 aa9.65□□□□□ -0.87
VPS39-201ENST00000318006 WFDC3Q8IUB2 231 aa9.65□□□□□ -0.87
VPS39-201ENST00000318006 OR9G4Q8NGQ1 327 aa9.65□□□□□ -0.87
VPS39-201ENST00000318006 CACNG8Q8WXS5 425 aa9.65□□□□□ -0.87
VPS39-201ENST00000318006 C1QTNF5Q9BXJ0 243 aa9.65□□□□□ -0.87
VPS39-201ENST00000318006 CYSLTR1Q9Y271 337 aa9.65□□□□□ -0.87
VPS39-201ENST00000318006 MRPS16Q9Y3D3 137 aaKnown RBP9.65□□□□□ -0.87
VPS39-201ENST00000318006 HBDP02042 147 aa9.64□□□□□ -0.87
VPS39-201ENST00000318006 TMEM186Q96B77 213 aa9.64□□□□□ -0.87
VPS39-201ENST00000318006 FNDC1Q4ZHG4 1894 aaPredicted RBP9.64□□□□□ -0.87
VPS39-201ENST00000318006 A0A1W2PRE2 83 aa9.64□□□□□ -0.87
VPS39-201ENST00000318006 SS18L1O75177 396 aaPredicted RBP9.64□□□□□ -0.87
VPS39-201ENST00000318006 GAGE13Q4V321 117 aa9.64□□□□□ -0.87
VPS39-201ENST00000318006 TMEM144Q7Z5S9 345 aa9.64□□□□□ -0.87
VPS39-201ENST00000318006 TRAV24A0A0B4J272 114 aa9.64□□□□□ -0.87
VPS39-201ENST00000318006 CKS1BP61024 79 aa9.64□□□□□ -0.87
VPS39-201ENST00000318006 LINC01551Q86U37 167 aa9.64□□□□□ -0.87
VPS39-201ENST00000318006 MESP1Q9BRJ9 268 aa9.64□□□□□ -0.87
VPS39-201ENST00000318006 REPIN1Q9BWE0 567 aaKnown RBP9.64□□□□□ -0.87
VPS39-201ENST00000318006 A0A0A6YYD4 124 aa9.63□□□□□ -0.87
VPS39-201ENST00000318006 IGKV1-9A0A0C4DH69 117 aa9.63□□□□□ -0.87
VPS39-201ENST00000318006 FAM181BA6NEQ2 426 aa9.63□□□□□ -0.87
VPS39-201ENST00000318006 PRR19A6NJB7 356 aa9.63□□□□□ -0.87
VPS39-201ENST00000318006 WDR82Q6UXN9 313 aa9.63□□□□□ -0.87
VPS39-201ENST00000318006 AGMATQ9BSE5 352 aa9.63□□□□□ -0.87
VPS39-201ENST00000318006 RALGAPA1Q6GYQ0 2036 aa9.63□□□□□ -0.87
VPS39-201ENST00000318006 A0A0G2JLM5 398 aa9.63□□□□□ -0.87
VPS39-201ENST00000318006 A0A1W2PS18 150 aa9.63□□□□□ -0.87
VPS39-201ENST00000318006 C9orf172C9J069 976 aa9.63□□□□□ -0.87
VPS39-201ENST00000318006 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.63□□□□□ -0.87
VPS39-201ENST00000318006 PPP1R17O96001 155 aa9.63□□□□□ -0.87
VPS39-201ENST00000318006 CD55P08174 381 aa9.63□□□□□ -0.87
VPS39-201ENST00000318006 CCL1P22362 96 aa9.63□□□□□ -0.87
VPS39-201ENST00000318006 MEIG1Q5JSS6 88 aa9.63□□□□□ -0.87
VPS39-201ENST00000318006 OSR1Q8TAX0 266 aaPredicted RBP9.63□□□□□ -0.87
VPS39-201ENST00000318006 WDR83OSQ9Y284 106 aa9.63□□□□□ -0.87
VPS39-201ENST00000318006 HEATR5BQ9P2D3 2071 aa9.63□□□□□ -0.87
VPS39-201ENST00000318006 IGKV1D-8A0A087WSZ0 117 aa9.63□□□□□ -0.87
VPS39-201ENST00000318006 TGFAP01135 160 aa9.63□□□□□ -0.87
VPS39-201ENST00000318006 GLRXP35754 106 aa9.63□□□□□ -0.87
VPS39-201ENST00000318006 LOXL3P58215 753 aa9.63□□□□□ -0.87
VPS39-201ENST00000318006 ZNF585BQ52M93 769 aa9.63□□□□□ -0.87
VPS39-201ENST00000318006 NTN3O00634 580 aaPredicted RBP9.63□□□□□ -0.87
VPS39-201ENST00000318006 ESDP10768 282 aa9.63□□□□□ -0.87
VPS39-201ENST00000318006 CACNG7P62955 275 aa9.63□□□□□ -0.87
VPS39-201ENST00000318006 PEAR1Q5VY43 1037 aaPredicted RBP9.63□□□□□ -0.87
VPS39-201ENST00000318006 ATP5L2Q7Z4Y8 100 aa9.63□□□□□ -0.87
VPS39-201ENST00000318006 GEMIN7Q9H840 131 aaKnown RBP9.63□□□□□ -0.87
VPS39-201ENST00000318006 FOXI3A8MTJ6 420 aaPredicted RBP9.62□□□□□ -0.87
VPS39-201ENST00000318006 MPV17L2Q567V2 206 aa9.62□□□□□ -0.87
VPS39-201ENST00000318006 SHISA5Q8N114 240 aa9.62□□□□□ -0.87
VPS39-201ENST00000318006 TEX45Q8NA69 505 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms