RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 APOA2P02652 100 aa11.81□□□□□ -0.52
SDC1-201ENST00000254351 MT-ND6P03923 174 aa11.81□□□□□ -0.52
SDC1-201ENST00000254351 DUTP33316 252 aaKnown RBP11.81□□□□□ -0.52
SDC1-201ENST00000254351 ZNF134P52741 427 aa11.81□□□□□ -0.52
SDC1-201ENST00000254351 NAV3Q8IVL0 2385 aa11.81□□□□□ -0.52
SDC1-201ENST00000254351 TANC2Q9HCD6 1990 aa11.81□□□□□ -0.52
SDC1-201ENST00000254351 LY6G6EA0A0G2JKS1 128 aa11.81□□□□□ -0.52
SDC1-201ENST00000254351 CD46P15529 392 aa11.81□□□□□ -0.52
SDC1-201ENST00000254351 ARG2P78540 354 aa11.81□□□□□ -0.52
SDC1-201ENST00000254351 RAB31Q13636 194 aa11.81□□□□□ -0.52
SDC1-201ENST00000254351 PMS2CLQ68D20 193 aa11.81□□□□□ -0.52
SDC1-201ENST00000254351 C19orf35Q6ZS72 473 aa11.81□□□□□ -0.52
SDC1-201ENST00000254351 C1orf229Q6ZS94 237 aaPredicted RBP11.81□□□□□ -0.52
SDC1-201ENST00000254351 OR8B3Q8NGG8 313 aa11.81□□□□□ -0.52
SDC1-201ENST00000254351 S1PR3Q99500 378 aa11.81□□□□□ -0.52
SDC1-201ENST00000254351 ZNRD1Q9P1U0 126 aa11.81□□□□□ -0.52
SDC1-201ENST00000254351 U3KQA8 63 aa11.81□□□□□ -0.52
SDC1-201ENST00000254351 PCNX2A6NKB5 2137 aa11.8□□□□□ -0.52
SDC1-201ENST00000254351 LOC102723996A0A087X1L8 192 aa11.8□□□□□ -0.52
SDC1-201ENST00000254351 HIGD1CA8MV81 97 aa11.8□□□□□ -0.52
SDC1-201ENST00000254351 TAX1BP3O14907 124 aa11.8□□□□□ -0.52
SDC1-201ENST00000254351 DNPH1O43598 174 aa11.8□□□□□ -0.52
SDC1-201ENST00000254351 OR5B3Q8NH48 314 aa11.8□□□□□ -0.52
SDC1-201ENST00000254351 DEFB127Q9H1M4 99 aa11.8□□□□□ -0.52
SDC1-201ENST00000254351 MEGF9Q9H1U4 602 aa11.8□□□□□ -0.52
SDC1-201ENST00000254351 TACC2O95359 2948 aa11.8□□□□□ -0.52
SDC1-201ENST00000254351 MUC15Q8N387 334 aa11.8□□□□□ -0.52
SDC1-201ENST00000254351 TMEM116Q8NCL8 245 aa11.8□□□□□ -0.52
SDC1-201ENST00000254351 NUP35Q8NFH5 326 aa11.8□□□□□ -0.52
SDC1-201ENST00000254351 BLNKQ8WV28 456 aa11.8□□□□□ -0.52
SDC1-201ENST00000254351 SARAFQ96BY9 339 aa11.8□□□□□ -0.52
SDC1-201ENST00000254351 ZNF503Q96F45 646 aa11.8□□□□□ -0.52
SDC1-201ENST00000254351 POLEQ07864 2286 aa11.8□□□□□ -0.52
SDC1-201ENST00000254351 IGKV1OR2-108A0A075B7D4 117 aa11.8□□□□□ -0.52
SDC1-201ENST00000254351 TRBV9A0A0B4J1U6 114 aa11.8□□□□□ -0.52
SDC1-201ENST00000254351 GAGE12BA1L429 117 aa11.8□□□□□ -0.52
SDC1-201ENST00000254351 C9JCJ5 164 aa11.8□□□□□ -0.52
SDC1-201ENST00000254351 PPIAL4DF5H284 164 aa11.8□□□□□ -0.52
SDC1-201ENST00000254351 MPDU1O75352 247 aa11.8□□□□□ -0.52
SDC1-201ENST00000254351 VDAC2P45880 294 aaPredicted RBP11.8□□□□□ -0.52
SDC1-201ENST00000254351 ZNF146Q15072 292 aa11.8□□□□□ -0.52
SDC1-201ENST00000254351 SMIM15Q7Z3B0 74 aa11.8□□□□□ -0.52
SDC1-201ENST00000254351 ZNRF1Q8ND25 227 aa11.8□□□□□ -0.52
SDC1-201ENST00000254351 NUDT10Q8NFP7 164 aa11.8□□□□□ -0.52
SDC1-201ENST00000254351 SNRNP40Q96DI7 357 aaKnown RBP11.8□□□□□ -0.52
SDC1-201ENST00000254351 TRIB1Q96RU8 372 aa11.8□□□□□ -0.52
SDC1-201ENST00000254351 ASCL2Q99929 193 aa11.8□□□□□ -0.52
SDC1-201ENST00000254351 SPINT2O43291 252 aa11.79□□□□□ -0.52
SDC1-201ENST00000254351 ERVK11-1P61568 191 aa11.79□□□□□ -0.52
SDC1-201ENST00000254351 UBE2L3P68036 154 aaKnown RBP11.79□□□□□ -0.52
SDC1-201ENST00000254351 EIF4EBP1Q13541 118 aaPredicted RBP11.79□□□□□ -0.52
SDC1-201ENST00000254351 FNDC4Q9H6D8 234 aaPredicted RBP11.79□□□□□ -0.52
SDC1-201ENST00000254351 TRAV8-6A0A0B4J262 113 aa11.79□□□□□ -0.52
SDC1-201ENST00000254351 PATE3B3GLJ2 98 aa11.79□□□□□ -0.52
SDC1-201ENST00000254351 IGLV2-8P01709 118 aa11.79□□□□□ -0.52
SDC1-201ENST00000254351 LINC00869P0C866 280 aa11.79□□□□□ -0.52
SDC1-201ENST00000254351 PSG9Q00887 426 aa11.79□□□□□ -0.52
SDC1-201ENST00000254351 TMEM70Q9BUB7 260 aa11.79□□□□□ -0.52
SDC1-201ENST00000254351 DUSP13Q9UII6 198 aa11.79□□□□□ -0.52
SDC1-201ENST00000254351 C2orf70A6NJV1 201 aa11.78□□□□□ -0.52
SDC1-201ENST00000254351 FAM201AQ5SY85 155 aa11.78□□□□□ -0.52
SDC1-201ENST00000254351 ZBTB34Q8NCN2 500 aa11.78□□□□□ -0.52
SDC1-201ENST00000254351 ZPBPQ9BS86 351 aa11.78□□□□□ -0.52
SDC1-201ENST00000254351 KLF13Q9Y2Y9 288 aaPredicted RBP11.78□□□□□ -0.52
SDC1-201ENST00000254351 TBC1D28Q2M2D7 210 aa11.78□□□□□ -0.52
SDC1-201ENST00000254351 SLC35E4Q6ICL7 350 aa11.78□□□□□ -0.52
SDC1-201ENST00000254351 TRAV9-1A0A075B6T8 112 aa11.77□□□□□ -0.52
SDC1-201ENST00000254351 TRAV30A0A087WSZ9 112 aa11.77□□□□□ -0.52
SDC1-201ENST00000254351 IZUMO1RA6ND01 250 aa11.77□□□□□ -0.52
SDC1-201ENST00000254351 H0YJW9 148 aa11.77□□□□□ -0.52
SDC1-201ENST00000254351 ISLRO14498 428 aa11.77□□□□□ -0.52
SDC1-201ENST00000254351 AREGP15514 252 aa11.77□□□□□ -0.52
SDC1-201ENST00000254351 OR10W1Q8NGF6 305 aa11.77□□□□□ -0.52
SDC1-201ENST00000254351 NANOS1Q8WY41 292 aaKnown RBP11.77□□□□□ -0.52
SDC1-201ENST00000254351 TXNDC17Q9BRA2 123 aa11.77□□□□□ -0.52
SDC1-201ENST00000254351 LSM4Q9Y4Z0 139 aaKnown RBP11.77□□□□□ -0.52
SDC1-201ENST00000254351 PRSS46E5RG02 174 aa11.77□□□□□ -0.53
SDC1-201ENST00000254351 APELAP0DMC3 54 aa11.77□□□□□ -0.53
SDC1-201ENST00000254351 RAB37Q96AX2 223 aa11.77□□□□□ -0.53
SDC1-201ENST00000254351 NUDT11Q96G61 164 aa11.77□□□□□ -0.53
SDC1-201ENST00000254351 OSTCQ9NRP0 149 aa11.77□□□□□ -0.53
SDC1-201ENST00000254351 BDP1A6H8Y1 2624 aa11.77□□□□□ -0.53
SDC1-201ENST00000254351 VWC2LB2RUY7 222 aa11.77□□□□□ -0.53
SDC1-201ENST00000254351 SMPD2O60906 423 aa11.77□□□□□ -0.53
SDC1-201ENST00000254351 BVES-AS1Q5T3Y7 98 aa11.77□□□□□ -0.53
SDC1-201ENST00000254351 PPP1R32Q7Z5V6 425 aa11.77□□□□□ -0.53
SDC1-201ENST00000254351 Q8IYB0 196 aa11.77□□□□□ -0.53
SDC1-201ENST00000254351 RND1Q92730 232 aa11.77□□□□□ -0.53
SDC1-201ENST00000254351 PGLYRP4Q96LB8 373 aa11.77□□□□□ -0.53
SDC1-201ENST00000254351 HES4Q9HCC6 221 aa11.77□□□□□ -0.53
SDC1-201ENST00000254351 SS18L1O75177 396 aaPredicted RBP11.76□□□□□ -0.53
SDC1-201ENST00000254351 SSBP2P81877 361 aaPredicted RBP11.76□□□□□ -0.53
SDC1-201ENST00000254351 S100A7AQ86SG5 101 aa11.76□□□□□ -0.53
SDC1-201ENST00000254351 C11orf52Q96A22 123 aa11.76□□□□□ -0.53
SDC1-201ENST00000254351 PILRBQ9UKJ0 227 aa11.76□□□□□ -0.53
SDC1-201ENST00000254351 HILPDAQ9Y5L2 63 aa11.76□□□□□ -0.53
SDC1-201ENST00000254351 SAA2-SAA4A0A096LPE2 208 aa11.76□□□□□ -0.53
SDC1-201ENST00000254351 SMIM27A0A1W2PRY6 76 aa11.76□□□□□ -0.53
SDC1-201ENST00000254351 KLK10O43240 276 aa11.76□□□□□ -0.53
SDC1-201ENST00000254351 TIMM8AO60220 97 aaPredicted RBP11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms