RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 VAMP3Q15836 100 aa9.85□□□□□ -0.83
USHBP1-201ENST00000252597 C1orf229Q6ZS94 237 aaPredicted RBP9.85□□□□□ -0.83
USHBP1-201ENST00000252597 C11orf53Q8IXP5 236 aa9.85□□□□□ -0.83
USHBP1-201ENST00000252597 RBMXL3Q8N7X1 1067 aaKnown RBP9.85□□□□□ -0.83
USHBP1-201ENST00000252597 COMMD5Q9GZQ3 224 aa9.85□□□□□ -0.83
USHBP1-201ENST00000252597 IL19Q9UHD0 177 aa9.85□□□□□ -0.83
USHBP1-201ENST00000252597 A0A1W2PNU3 283 aaPredicted RBP9.85□□□□□ -0.83
USHBP1-201ENST00000252597 DPRXA6NFQ7 191 aa9.85□□□□□ -0.83
USHBP1-201ENST00000252597 PDLIM4P50479 330 aa9.85□□□□□ -0.83
USHBP1-201ENST00000252597 GABRA6Q16445 453 aa9.85□□□□□ -0.83
USHBP1-201ENST00000252597 ACSF3Q4G176 576 aaPredicted RBP9.85□□□□□ -0.83
USHBP1-201ENST00000252597 COL5A1-AS1Q5SY13 56 aa9.85□□□□□ -0.83
USHBP1-201ENST00000252597 HCP5Q6MZN7 132 aa9.85□□□□□ -0.83
USHBP1-201ENST00000252597 TMEM144Q7Z5S9 345 aa9.85□□□□□ -0.83
USHBP1-201ENST00000252597 KIR3DL3Q8N743 410 aa9.85□□□□□ -0.83
USHBP1-201ENST00000252597 C20orf202A1L168 122 aa9.85□□□□□ -0.83
USHBP1-201ENST00000252597 LEMD1Q68G75 181 aa9.85□□□□□ -0.83
USHBP1-201ENST00000252597 STUMQ69YW2 141 aa9.85□□□□□ -0.83
USHBP1-201ENST00000252597 C9orf106Q8NAJ2 232 aa9.85□□□□□ -0.83
USHBP1-201ENST00000252597 TMEM178AQ8NBL3 297 aa9.85□□□□□ -0.83
USHBP1-201ENST00000252597 SLC45A2Q9UMX9 530 aa9.85□□□□□ -0.83
USHBP1-201ENST00000252597 IGKV1D-17A0A075B6S4 117 aa9.84□□□□□ -0.83
USHBP1-201ENST00000252597 TMEM210A6NLX4 147 aa9.84□□□□□ -0.83
USHBP1-201ENST00000252597 IQCF6A8MYZ5 107 aa9.84□□□□□ -0.83
USHBP1-201ENST00000252597 COX7A2P2O60397 106 aa9.84□□□□□ -0.83
USHBP1-201ENST00000252597 ADH4P08319 380 aa9.84□□□□□ -0.83
USHBP1-201ENST00000252597 CYC1P08574 325 aa9.84□□□□□ -0.83
USHBP1-201ENST00000252597 DLX1P56177 255 aa9.84□□□□□ -0.83
USHBP1-201ENST00000252597 HSPE1P61604 102 aaKnown RBP9.84□□□□□ -0.83
USHBP1-201ENST00000252597 MOSP00540 346 aa9.84□□□□□ -0.83
USHBP1-201ENST00000252597 C3orf79P0CE67 100 aa9.84□□□□□ -0.83
USHBP1-201ENST00000252597 LGALS4P56470 323 aa9.84□□□□□ -0.83
USHBP1-201ENST00000252597 MORN5Q5VZ52 161 aa9.84□□□□□ -0.83
USHBP1-201ENST00000252597 STPG4Q8N801 248 aa9.84□□□□□ -0.83
USHBP1-201ENST00000252597 ZNF835Q9Y2P0 537 aa9.84□□□□□ -0.83
USHBP1-201ENST00000252597 CBY3A6NI87 242 aa9.84□□□□□ -0.83
USHBP1-201ENST00000252597 MMP23AO75900 390 aa9.84□□□□□ -0.83
USHBP1-201ENST00000252597 LINC00869P0C866 280 aa9.84□□□□□ -0.83
USHBP1-201ENST00000252597 S100A7P31151 101 aa9.84□□□□□ -0.83
USHBP1-201ENST00000252597 LINC00310P59036 64 aa9.84□□□□□ -0.83
USHBP1-201ENST00000252597 UBE2G1P62253 170 aa9.84□□□□□ -0.83
USHBP1-201ENST00000252597 CT45A1Q5HYN5 189 aa9.84□□□□□ -0.83
USHBP1-201ENST00000252597 C19orf35Q6ZS72 473 aa9.84□□□□□ -0.83
USHBP1-201ENST00000252597 CT45A3Q8NHU0 189 aa9.84□□□□□ -0.83
USHBP1-201ENST00000252597 GMPPAQ96IJ6 420 aaPredicted RBP9.84□□□□□ -0.83
USHBP1-201ENST00000252597 GP6Q9HCN6 339 aa9.84□□□□□ -0.83
USHBP1-201ENST00000252597 TRGV10A0A0A0MS01 117 aa9.83□□□□□ -0.84
USHBP1-201ENST00000252597 GPX1P07203 203 aa9.83□□□□□ -0.84
USHBP1-201ENST00000252597 ZNF138P52744 262 aa9.83□□□□□ -0.84
USHBP1-201ENST00000252597 TCF24Q7RTU0 167 aa9.83□□□□□ -0.84
USHBP1-201ENST00000252597 CENPVQ7Z7K6 275 aaPredicted RBP9.83□□□□□ -0.84
USHBP1-201ENST00000252597 ASH1LQ9NR48 2969 aaKnown RBP9.83□□□□□ -0.84
USHBP1-201ENST00000252597 MPDU1O75352 247 aa9.83□□□□□ -0.84
USHBP1-201ENST00000252597 Q8N7P7 452 aa9.83□□□□□ -0.84
USHBP1-201ENST00000252597 FDCSPQ8NFU4 85 aa9.83□□□□□ -0.84
USHBP1-201ENST00000252597 NPIPB3Q92617 1050 aa9.83□□□□□ -0.84
USHBP1-201ENST00000252597 SVEP1Q4LDE5 3571 aa9.83□□□□□ -0.84
USHBP1-201ENST00000252597 KIR2DL5BA0A0G2JN68 375 aa9.82□□□□□ -0.84
USHBP1-201ENST00000252597 KIR2DL5BA0A0G2JPC4 375 aa9.82□□□□□ -0.84
USHBP1-201ENST00000252597 A0A1W2PS18 150 aa9.82□□□□□ -0.84
USHBP1-201ENST00000252597 GGTLC3B5MD39 225 aa9.82□□□□□ -0.84
USHBP1-201ENST00000252597 CORTO00230 105 aa9.82□□□□□ -0.84
USHBP1-201ENST00000252597 MGST3O14880 152 aa9.82□□□□□ -0.84
USHBP1-201ENST00000252597 SS18L1O75177 396 aaPredicted RBP9.82□□□□□ -0.84
USHBP1-201ENST00000252597 SLAQ13239 276 aa9.82□□□□□ -0.84
USHBP1-201ENST00000252597 DNLZQ5SXM8 178 aa9.82□□□□□ -0.84
USHBP1-201ENST00000252597 KIR2DL5AQ8N109 375 aa9.82□□□□□ -0.84
USHBP1-201ENST00000252597 OR1B1Q8NGR6 318 aa9.82□□□□□ -0.84
USHBP1-201ENST00000252597 HARBI1Q96MB7 349 aa9.82□□□□□ -0.84
USHBP1-201ENST00000252597 OR8B2Q96RD0 313 aa9.82□□□□□ -0.84
USHBP1-201ENST00000252597 M0QZK8 103 aa9.82□□□□□ -0.84
USHBP1-201ENST00000252597 SLC25A5P05141 298 aaKnown RBP9.82□□□□□ -0.84
USHBP1-201ENST00000252597 TNXAQ16473 311 aa9.82□□□□□ -0.84
USHBP1-201ENST00000252597 INO80CQ6PI98 192 aaPredicted RBP9.82□□□□□ -0.84
USHBP1-201ENST00000252597 GCSAMQ8N6F7 178 aa9.82□□□□□ -0.84
USHBP1-201ENST00000252597 SLC35E1Q96K37 410 aa9.82□□□□□ -0.84
USHBP1-201ENST00000252597 CDC42EP3Q9UKI2 254 aa9.82□□□□□ -0.84
USHBP1-201ENST00000252597 KMT2EQ8IZD2 1858 aa9.82□□□□□ -0.84
USHBP1-201ENST00000252597 CCL3L1P16619 93 aa9.82□□□□□ -0.84
USHBP1-201ENST00000252597 ACP1P24666 158 aa9.82□□□□□ -0.84
USHBP1-201ENST00000252597 VDAC2P45880 294 aaPredicted RBP9.82□□□□□ -0.84
USHBP1-201ENST00000252597 FLYWCH2Q96CP2 140 aaKnown RBP9.82□□□□□ -0.84
USHBP1-201ENST00000252597 IFI27L2Q9H2X8 130 aa9.82□□□□□ -0.84
USHBP1-201ENST00000252597 LAMTOR2Q9Y2Q5 125 aa9.82□□□□□ -0.84
USHBP1-201ENST00000252597 V9GYV3 84 aa9.82□□□□□ -0.84
USHBP1-201ENST00000252597 MALRD1Q5VYJ5 2156 aa9.81□□□□□ -0.84
USHBP1-201ENST00000252597 MUC21A0A0G2JKD1 596 aa9.81□□□□□ -0.84
USHBP1-201ENST00000252597 MUC21A0A140T8X8 626 aa9.81□□□□□ -0.84
USHBP1-201ENST00000252597 SPAARA0A1B0GVQ0 90 aa9.81□□□□□ -0.84
USHBP1-201ENST00000252597 CD99P14209 185 aa9.81□□□□□ -0.84
USHBP1-201ENST00000252597 TAS2R45P59539 299 aa9.81□□□□□ -0.84
USHBP1-201ENST00000252597 SSBP2P81877 361 aaPredicted RBP9.81□□□□□ -0.84
USHBP1-201ENST00000252597 DEFB109BQ30KR1 87 aa9.81□□□□□ -0.84
USHBP1-201ENST00000252597 MUC21Q5SSG8 566 aa9.81□□□□□ -0.84
USHBP1-201ENST00000252597 Q6ZT83 130 aa9.81□□□□□ -0.84
USHBP1-201ENST00000252597 RNF2Q99496 336 aa9.81□□□□□ -0.84
USHBP1-201ENST00000252597 PARD6GQ9BYG4 376 aaPredicted RBP9.81□□□□□ -0.84
USHBP1-201ENST00000252597 PROCRQ9UNN8 238 aa9.81□□□□□ -0.84
USHBP1-201ENST00000252597 MRPS18CQ9Y3D5 142 aaKnown RBP9.81□□□□□ -0.84
USHBP1-201ENST00000252597 AMMECR1Q9Y4X0 333 aaPredicted RBP9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms