RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 MOB4Q9Y3A3 225 aa10.73□□□□□ -0.69
USP40-201ENST00000251722 C12orf77C9JDV5 145 aa10.72□□□□□ -0.69
USP40-201ENST00000251722 SERF1AO75920 110 aa10.72□□□□□ -0.69
USP40-201ENST00000251722 IFI27L2Q9H2X8 130 aa10.72□□□□□ -0.69
USP40-201ENST00000251722 PRR13Q9NZ81 148 aa10.72□□□□□ -0.69
USP40-201ENST00000251722 F11RQ9Y624 299 aaKnown RBP10.72□□□□□ -0.69
USP40-201ENST00000251722 OTOFQ9HC10 1997 aa10.72□□□□□ -0.69
USP40-201ENST00000251722 C1QL1O75973 258 aa10.72□□□□□ -0.69
USP40-201ENST00000251722 APELAP0DMC3 54 aa10.72□□□□□ -0.69
USP40-201ENST00000251722 OR9G4Q8NGQ1 327 aa10.72□□□□□ -0.69
USP40-201ENST00000251722 KLHDC3Q9BQ90 382 aa10.72□□□□□ -0.69
USP40-201ENST00000251722 C21orf62Q9NYP8 219 aa10.72□□□□□ -0.69
USP40-201ENST00000251722 PGPEP1LA6NFU8 196 aa10.72□□□□□ -0.69
USP40-201ENST00000251722 PIN1P1O15428 100 aa10.72□□□□□ -0.69
USP40-201ENST00000251722 NBR2O15453 112 aa10.72□□□□□ -0.69
USP40-201ENST00000251722 RAMP1O60894 148 aa10.72□□□□□ -0.69
USP40-201ENST00000251722 MINOS1Q5TGZ0 78 aa10.72□□□□□ -0.69
USP40-201ENST00000251722 SMIM20Q8N5G0 67 aa10.72□□□□□ -0.69
USP40-201ENST00000251722 TEX45Q8NA69 505 aa10.72□□□□□ -0.69
USP40-201ENST00000251722 IL36RNQ9UBH0 155 aa10.72□□□□□ -0.69
USP40-201ENST00000251722 MINOS1-NBL1R4GNA1 71 aa10.72□□□□□ -0.69
USP40-201ENST00000251722 ANKRD36A6QL64 1941 aa10.72□□□□□ -0.69
USP40-201ENST00000251722 IGHV3-21A0A0B4J1V1 117 aa10.72□□□□□ -0.69
USP40-201ENST00000251722 TMEM95Q3KNT9 176 aa10.72□□□□□ -0.69
USP40-201ENST00000251722 OR10J3Q5JRS4 329 aa10.72□□□□□ -0.69
USP40-201ENST00000251722 IBA57Q5T440 356 aaKnown RBP10.72□□□□□ -0.69
USP40-201ENST00000251722 FAM159AQ6UWV7 190 aa10.72□□□□□ -0.69
USP40-201ENST00000251722 PPBPP02775 128 aa10.71□□□□□ -0.69
USP40-201ENST00000251722 TMEM133Q9H2Q1 129 aa10.71□□□□□ -0.69
USP40-201ENST00000251722 FBXL7Q9UJT9 491 aa10.71□□□□□ -0.69
USP40-201ENST00000251722 DUSP14O95147 198 aaKnown RBP10.71□□□□□ -0.69
USP40-201ENST00000251722 IGKV1D-33P01593 117 aa10.71□□□□□ -0.69
USP40-201ENST00000251722 IGKV1-33P01594 117 aa10.71□□□□□ -0.69
USP40-201ENST00000251722 TEX38Q6PEX7 206 aa10.71□□□□□ -0.69
USP40-201ENST00000251722 A0A1B0GW64 132 aa10.71□□□□□ -0.69
USP40-201ENST00000251722 RNF222A6NCQ9 220 aa10.71□□□□□ -0.69
USP40-201ENST00000251722 C9orf153Q5TBE3 101 aa10.71□□□□□ -0.69
USP40-201ENST00000251722 ZNF818PQ6ZRF7 136 aa10.71□□□□□ -0.69
USP40-201ENST00000251722 SBF1O95248 1867 aa10.71□□□□□ -0.7
USP40-201ENST00000251722 GAGE12HA6NDE8 117 aa10.71□□□□□ -0.7
USP40-201ENST00000251722 ADIPOQQ15848 244 aa10.71□□□□□ -0.7
USP40-201ENST00000251722 PVRIGQ6DKI7 326 aa10.71□□□□□ -0.7
USP40-201ENST00000251722 TCF24Q7RTU0 167 aa10.71□□□□□ -0.7
USP40-201ENST00000251722 DOCK3Q8IZD9 2030 aa10.71□□□□□ -0.7
USP40-201ENST00000251722 IGHG3P01860 377 aa10.71□□□□□ -0.7
USP40-201ENST00000251722 Q6ZS92 163 aa10.71□□□□□ -0.7
USP40-201ENST00000251722 NDUFB4O95168 129 aa10.7□□□□□ -0.7
USP40-201ENST00000251722 TBX6O95947 436 aaPredicted RBP10.7□□□□□ -0.7
USP40-201ENST00000251722 GCSAMLQ5JQS6 135 aa10.7□□□□□ -0.7
USP40-201ENST00000251722 ZNRF1Q8ND25 227 aa10.7□□□□□ -0.7
USP40-201ENST00000251722 SPRR3Q9UBC9 169 aa10.7□□□□□ -0.7
USP40-201ENST00000251722 MBD3L4A6NDZ8 208 aaPredicted RBP10.7□□□□□ -0.7
USP40-201ENST00000251722 MBD3L3A6NE82 208 aaPredicted RBP10.7□□□□□ -0.7
USP40-201ENST00000251722 MBD3L5A6NJ08 208 aaPredicted RBP10.7□□□□□ -0.7
USP40-201ENST00000251722 MBD3L2Q8NHZ7 208 aaPredicted RBP10.7□□□□□ -0.7
USP40-201ENST00000251722 ZNF479Q96JC4 524 aa10.7□□□□□ -0.7
USP40-201ENST00000251722 SLC50A1Q9BRV3 221 aa10.7□□□□□ -0.7
USP40-201ENST00000251722 IL36BQ9NZH7 164 aa10.7□□□□□ -0.7
USP40-201ENST00000251722 TRAV5A0A0B4J249 113 aa10.7□□□□□ -0.7
USP40-201ENST00000251722 SSTR5P35346 364 aa10.7□□□□□ -0.7
USP40-201ENST00000251722 SRSF3P84103 164 aaKnown RBP10.7□□□□□ -0.7
USP40-201ENST00000251722 TCF23Q7RTU1 214 aa10.7□□□□□ -0.7
USP40-201ENST00000251722 MDS2Q8NDY4 140 aa10.7□□□□□ -0.7
USP40-201ENST00000251722 KNTC1P50748 2209 aa10.7□□□□□ -0.7
USP40-201ENST00000251722 K7EP13 123 aa10.7□□□□□ -0.7
USP40-201ENST00000251722 UCP1P25874 307 aa10.7□□□□□ -0.7
USP40-201ENST00000251722 LEPP41159 167 aa10.7□□□□□ -0.7
USP40-201ENST00000251722 ZNF415Q09FC8 603 aa10.7□□□□□ -0.7
USP40-201ENST00000251722 C3orf36Q3SXR2 165 aa10.7□□□□□ -0.7
USP40-201ENST00000251722 THSD7BQ9C0I4 1608 aa10.69□□□□□ -0.7
USP40-201ENST00000251722 ZNF324O75467 553 aaPredicted RBP10.69□□□□□ -0.7
USP40-201ENST00000251722 CBLN1P23435 193 aa10.69□□□□□ -0.7
USP40-201ENST00000251722 NABP2Q9BQ15 211 aa10.69□□□□□ -0.7
USP40-201ENST00000251722 MESP1Q9BRJ9 268 aa10.69□□□□□ -0.7
USP40-201ENST00000251722 IGHV1-18A0A0C4DH31 117 aa10.69□□□□□ -0.7
USP40-201ENST00000251722 B4DSR2 109 aa10.69□□□□□ -0.7
USP40-201ENST00000251722 GATA3P23771 443 aa10.69□□□□□ -0.7
USP40-201ENST00000251722 Q6AWC8 147 aa10.69□□□□□ -0.7
USP40-201ENST00000251722 TSSC4Q9Y5U2 329 aaPredicted RBP10.69□□□□□ -0.7
USP40-201ENST00000251722 SCN3AQ9NY46 2000 aa10.69□□□□□ -0.7
USP40-201ENST00000251722 ZG16O60844 167 aa10.69□□□□□ -0.7
USP40-201ENST00000251722 MIC13Q5XKP0 118 aa10.69□□□□□ -0.7
USP40-201ENST00000251722 LAIR2Q6ISS4 152 aa10.69□□□□□ -0.7
USP40-201ENST00000251722 COLCA1Q6ZS62 124 aa10.69□□□□□ -0.7
USP40-201ENST00000251722 ST6GALNAC6Q969X2 333 aa10.69□□□□□ -0.7
USP40-201ENST00000251722 SOSTQ9BQB4 213 aa10.69□□□□□ -0.7
USP40-201ENST00000251722 AICDAQ9GZX7 198 aa10.69□□□□□ -0.7
USP40-201ENST00000251722 C5orf66Q9H5L9 145 aa10.69□□□□□ -0.7
USP40-201ENST00000251722 C5orf47Q569G3 176 aa10.69□□□□□ -0.7
USP40-201ENST00000251722 WBP1Q96G27 269 aa10.69□□□□□ -0.7
USP40-201ENST00000251722 WFDC6Q9BQY6 131 aa10.69□□□□□ -0.7
USP40-201ENST00000251722 LCTP09848 1927 aa10.69□□□□□ -0.7
USP40-201ENST00000251722 MORN3Q6PF18 240 aaPredicted RBP10.69□□□□□ -0.7
USP40-201ENST00000251722 FAM216BQ8N7L0 139 aa10.69□□□□□ -0.7
USP40-201ENST00000251722 WNT2P09544 360 aa10.68□□□□□ -0.7
USP40-201ENST00000251722 Q8NFD4 153 aa10.68□□□□□ -0.7
USP40-201ENST00000251722 ATG2BQ96BY7 2078 aa10.68□□□□□ -0.7
USP40-201ENST00000251722 M0R1W7 72 aa10.68□□□□□ -0.7
USP40-201ENST00000251722 CEACAM8P31997 349 aaPredicted RBP10.68□□□□□ -0.7
USP40-201ENST00000251722 CKS2P33552 79 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms